RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 EMP1P54849 157 aa14.03□□□□□ -0.16
HDAC1-201ENST00000373548 RRN3P1Q2M238 152 aa14.03□□□□□ -0.16
HDAC1-201ENST00000373548 TMEM97Q5BJF2 176 aa14.03□□□□□ -0.16
HDAC1-201ENST00000373548 TRAV8-6A0A0B4J262 113 aa14.02□□□□□ -0.16
HDAC1-201ENST00000373548 MAPKAPK5-AS1Q8N8E1 139 aa14.02□□□□□ -0.16
HDAC1-201ENST00000373548 PHLDA1Q8WV24 401 aaPredicted RBP14.02□□□□□ -0.17
HDAC1-201ENST00000373548 CHCHD7Q9BUK0 85 aa14.02□□□□□ -0.17
HDAC1-201ENST00000373548 ATRQ13535 2644 aa14.01□□□□□ -0.17
HDAC1-201ENST00000373548 IGLV4-3A0A075B6K6 122 aa14.01□□□□□ -0.17
HDAC1-201ENST00000373548 IGHV3-38A0A0C4DH36 116 aa14.01□□□□□ -0.17
HDAC1-201ENST00000373548 PAPPA-AS1Q5QFB9 102 aa14.01□□□□□ -0.17
HDAC1-201ENST00000373548 OVOL2Q9BRP0 275 aa14.01□□□□□ -0.17
HDAC1-201ENST00000373548 TRBV25-1A0A075B6N4 114 aa14□□□□□ -0.17
HDAC1-201ENST00000373548 HSD52Q0P140 79 aa14□□□□□ -0.17
HDAC1-201ENST00000373548 Q6ZVH6 145 aa14□□□□□ -0.17
HDAC1-201ENST00000373548 HIGD1BQ9P298 99 aa14□□□□□ -0.17
HDAC1-201ENST00000373548 ZNF25P17030 456 aaPredicted RBP14□□□□□ -0.17
HDAC1-201ENST00000373548 PYGO1Q9Y3Y4 419 aa14□□□□□ -0.17
HDAC1-201ENST00000373548 GAGE12BA1L429 117 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 E9PLD3 99 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 GAGE7O76087 117 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 GAGE12FP0CL80 117 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 GAGE12GP0CL81 117 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 GAGE12IP0CL82 117 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 FAM104AQ969W3 186 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 K7EQD1 137 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 OR11H2Q8NH07 326 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 ZNRF2Q8NHG8 242 aa13.99□□□□□ -0.17
HDAC1-201ENST00000373548 ZMAT5Q9UDW3 170 aaKnown RBP13.99□□□□□ -0.17
HDAC1-201ENST00000373548 COTL1Q14019 142 aa13.98□□□□□ -0.17
HDAC1-201ENST00000373548 PRADC1Q9BSG0 188 aa13.98□□□□□ -0.17
HDAC1-201ENST00000373548 TRBV7-3A0A075B6L6 115 aa13.97□□□□□ -0.17
HDAC1-201ENST00000373548 TRBV10-1A0A0K0K1A3 114 aa13.97□□□□□ -0.17
HDAC1-201ENST00000373548 CHAC1Q9BUX1 264 aa13.97□□□□□ -0.17
HDAC1-201ENST00000373548 CEMP1Q6PRD7 247 aaPredicted RBP13.97□□□□□ -0.17
HDAC1-201ENST00000373548 SLC25A29Q8N8R3 303 aa13.97□□□□□ -0.17
HDAC1-201ENST00000373548 TRGV2A0A075B6R0 118 aa13.96□□□□□ -0.17
HDAC1-201ENST00000373548 SEC11AP67812 179 aa13.96□□□□□ -0.17
HDAC1-201ENST00000373548 NFE4Q86UQ8 179 aa13.96□□□□□ -0.17
HDAC1-201ENST00000373548 ORAOV1Q8WV07 137 aa13.96□□□□□ -0.17
HDAC1-201ENST00000373548 VCX2Q9H322 139 aa13.96□□□□□ -0.17
HDAC1-201ENST00000373548 COX11Q9Y6N1 276 aa13.96□□□□□ -0.17
HDAC1-201ENST00000373548 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.96□□□□□ -0.18
HDAC1-201ENST00000373548 IGKV2-29A2NJV5 120 aaPredicted RBP13.96□□□□□ -0.18
HDAC1-201ENST00000373548 TAX1BP3O14907 124 aa13.96□□□□□ -0.18
HDAC1-201ENST00000373548 LINC00469Q8N7U9 141 aa13.96□□□□□ -0.18
HDAC1-201ENST00000373548 RPL36AP83881 106 aaKnown RBP13.95□□□□□ -0.18
HDAC1-201ENST00000373548 RPL36ALQ969Q0 106 aaKnown RBP13.95□□□□□ -0.18
HDAC1-201ENST00000373548 AMELXQ99217 191 aa13.95□□□□□ -0.18
HDAC1-201ENST00000373548 UBE2D4Q9Y2X8 147 aa13.95□□□□□ -0.18
HDAC1-201ENST00000373548 TMEM170BQ5T4T1 132 aa13.94□□□□□ -0.18
HDAC1-201ENST00000373548 SPANXA1Q9NS26 97 aa13.94□□□□□ -0.18
HDAC1-201ENST00000373548 MYMXA0A1B0GTQ4 84 aa13.94□□□□□ -0.18
HDAC1-201ENST00000373548 WFDC9Q8NEX5 89 aa13.94□□□□□ -0.18
HDAC1-201ENST00000373548 NPSP0C0P6 89 aa13.93□□□□□ -0.18
HDAC1-201ENST00000373548 HERVK_113P61574 105 aa13.93□□□□□ -0.18
HDAC1-201ENST00000373548 CRYBA4P53673 196 aa13.93□□□□□ -0.18
HDAC1-201ENST00000373548 A0A0J9YXV3 536 aa13.92□□□□□ -0.18
HDAC1-201ENST00000373548 UBE2D3P61077 147 aa13.92□□□□□ -0.18
HDAC1-201ENST00000373548 UBE2D2P62837 147 aa13.92□□□□□ -0.18
HDAC1-201ENST00000373548 X6R8D5 127 aa13.92□□□□□ -0.18
HDAC1-201ENST00000373548 GAGE12JA6NER3 117 aa13.91□□□□□ -0.18
HDAC1-201ENST00000373548 CIDEAO60543 219 aa13.91□□□□□ -0.18
HDAC1-201ENST00000373548 GAGE1Q13065 139 aa13.91□□□□□ -0.18
HDAC1-201ENST00000373548 GAGE4Q13068 117 aa13.91□□□□□ -0.18
HDAC1-201ENST00000373548 GAGE5Q13069 117 aa13.91□□□□□ -0.18
HDAC1-201ENST00000373548 GAGE13Q4V321 117 aa13.91□□□□□ -0.18
HDAC1-201ENST00000373548 RNASE13Q5GAN3 156 aaKnown RBP13.91□□□□□ -0.18
HDAC1-201ENST00000373548 DAZ4Q86SG3 579 aaKnown RBP13.91□□□□□ -0.18
HDAC1-201ENST00000373548 DAZ3Q9NR90 486 aaKnown RBP13.91□□□□□ -0.18
HDAC1-201ENST00000373548 TRBV6-4A0A1B0GX49 114 aa13.9□□□□□ -0.18
HDAC1-201ENST00000373548 ZNF22P17026 224 aaPredicted RBP13.9□□□□□ -0.18
HDAC1-201ENST00000373548 NTM-AS1Q6ZSK4 140 aa13.9□□□□□ -0.18
HDAC1-201ENST00000373548 Q6ZUT4 128 aa13.9□□□□□ -0.18
HDAC1-201ENST00000373548 TRGV4A0A0C4DH28 118 aa13.89□□□□□ -0.19
HDAC1-201ENST00000373548 A6NDN8 102 aa13.89□□□□□ -0.19
HDAC1-201ENST00000373548 ZNF815PA8K554 130 aa13.89□□□□□ -0.19
HDAC1-201ENST00000373548 GCSHP23434 173 aa13.89□□□□□ -0.19
HDAC1-201ENST00000373548 LOC100131303A0A0U1RQF7 123 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 WIPF1O43516 503 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 FXYD2P54710 66 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 TSPEAR-AS2P59090 65 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 FHL2Q14192 279 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 KIR2DL5BQ8NHK3 375 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 TMEM223A0PJW6 202 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 SMIM9A6NGZ8 99 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 K7EP13 123 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 MRPS36P82909 103 aaKnown RBP13.88□□□□□ -0.19
HDAC1-201ENST00000373548 LINC00612Q8N6U2 182 aa13.88□□□□□ -0.19
HDAC1-201ENST00000373548 KRTAP24-1Q3LI83 254 aa13.87□□□□□ -0.19
HDAC1-201ENST00000373548 TIMM21Q9BVV7 248 aa13.87□□□□□ -0.19
HDAC1-201ENST00000373548 TAL2Q16559 108 aa13.87□□□□□ -0.19
HDAC1-201ENST00000373548 CEND1Q8N111 149 aa13.87□□□□□ -0.19
HDAC1-201ENST00000373548 TM2D2Q9BX73 214 aa13.87□□□□□ -0.19
HDAC1-201ENST00000373548 DEFB130BP0DP73 79 aa13.86□□□□□ -0.19
HDAC1-201ENST00000373548 DEFB130AP0DP74 79 aa13.86□□□□□ -0.19
HDAC1-201ENST00000373548 PLEKHB2Q96CS7 222 aa13.86□□□□□ -0.19
HDAC1-201ENST00000373548 LINC00694P0DN24 101 aa13.85□□□□□ -0.19
HDAC1-201ENST00000373548 APOC4P55056 127 aa13.85□□□□□ -0.19
HDAC1-201ENST00000373548 DEFB135Q30KP9 77 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms