RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 ATRQ13535 2644 aa11.88□□□□□ -0.51
CCDC40-201ENST00000269318 OPRPNQ99935 248 aaPredicted RBP11.88□□□□□ -0.51
CCDC40-201ENST00000269318 CHCHD7Q9BUK0 85 aa11.88□□□□□ -0.51
CCDC40-201ENST00000269318 PYGO1Q9Y3Y4 419 aa11.87□□□□□ -0.51
CCDC40-201ENST00000269318 IGLV4-3A0A075B6K6 122 aa11.87□□□□□ -0.51
CCDC40-201ENST00000269318 C11orf86A6NJI1 115 aa11.87□□□□□ -0.51
CCDC40-201ENST00000269318 FAM104AQ969W3 186 aa11.87□□□□□ -0.51
CCDC40-201ENST00000269318 TRBV10-1A0A0K0K1A3 114 aa11.86□□□□□ -0.51
CCDC40-201ENST00000269318 K7EQD1 137 aa11.86□□□□□ -0.51
CCDC40-201ENST00000269318 WIPF1O43516 503 aa11.86□□□□□ -0.51
CCDC40-201ENST00000269318 IGHV3-38A0A0C4DH36 116 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 GAGE12BA1L429 117 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 GAGE7O76087 117 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 GAGE12FP0CL80 117 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 GAGE12GP0CL81 117 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 GAGE12IP0CL82 117 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 PAPPA-AS1Q5QFB9 102 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 SLC25A29Q8N8R3 303 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 PHLDA1Q8WV24 401 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-201ENST00000269318 TRBV7-3A0A075B6L6 115 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 EMP1P54849 157 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 MAPKAPK5-AS1Q8N8E1 139 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 ZNRF2Q8NHG8 242 aa11.85□□□□□ -0.51
CCDC40-201ENST00000269318 NOTCH3Q9UM47 2321 aa11.84□□□□□ -0.51
CCDC40-201ENST00000269318 E9PLD3 99 aa11.84□□□□□ -0.51
CCDC40-201ENST00000269318 COTL1Q14019 142 aa11.84□□□□□ -0.51
CCDC40-201ENST00000269318 TMEM97Q5BJF2 176 aa11.84□□□□□ -0.51
CCDC40-201ENST00000269318 HIGD1BQ9P298 99 aa11.84□□□□□ -0.51
CCDC40-201ENST00000269318 TRRAPQ9Y4A5 3859 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 TRGV2A0A075B6R0 118 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 CIDEAO60543 219 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 X6R8D5 127 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 TRBV25-1A0A075B6N4 114 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 TRAV8-6A0A0B4J262 113 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 NPSP0C0P6 89 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 KRTAP24-1Q3LI83 254 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 NFE4Q86UQ8 179 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 UBE2D4Q9Y2X8 147 aa11.83□□□□□ -0.52
CCDC40-201ENST00000269318 RPL36AP83881 106 aaKnown RBP11.82□□□□□ -0.52
CCDC40-201ENST00000269318 HSD52Q0P140 79 aa11.82□□□□□ -0.52
CCDC40-201ENST00000269318 RPL36ALQ969Q0 106 aaKnown RBP11.82□□□□□ -0.52
CCDC40-201ENST00000269318 AMELXQ99217 191 aa11.82□□□□□ -0.52
CCDC40-201ENST00000269318 ZMAT5Q9UDW3 170 aaKnown RBP11.82□□□□□ -0.52
CCDC40-201ENST00000269318 CRYBA4P53673 196 aa11.81□□□□□ -0.52
CCDC40-201ENST00000269318 UBE2D3P61077 147 aa11.81□□□□□ -0.52
CCDC40-201ENST00000269318 UBE2D2P62837 147 aa11.81□□□□□ -0.52
CCDC40-201ENST00000269318 CEMP1Q6PRD7 247 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-201ENST00000269318 OR11H2Q8NH07 326 aa11.81□□□□□ -0.52
CCDC40-201ENST00000269318 PRADC1Q9BSG0 188 aa11.81□□□□□ -0.52
CCDC40-201ENST00000269318 VCX2Q9H322 139 aa11.81□□□□□ -0.52
CCDC40-201ENST00000269318 SPANXA1Q9NS26 97 aa11.81□□□□□ -0.52
CCDC40-201ENST00000269318 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-201ENST00000269318 IGKV2-29A2NJV5 120 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-201ENST00000269318 LINC00612Q8N6U2 182 aa11.81□□□□□ -0.52
CCDC40-201ENST00000269318 KIR2DL5BQ8NHK3 375 aa11.81□□□□□ -0.52
CCDC40-201ENST00000269318 TRBV6-4A0A1B0GX49 114 aa11.8□□□□□ -0.52
CCDC40-201ENST00000269318 SMIM9A6NGZ8 99 aa11.8□□□□□ -0.52
CCDC40-201ENST00000269318 DAZ4Q86SG3 579 aaKnown RBP11.8□□□□□ -0.52
CCDC40-201ENST00000269318 DAZ3Q9NR90 486 aaKnown RBP11.8□□□□□ -0.52
CCDC40-201ENST00000269318 CHAC1Q9BUX1 264 aa11.79□□□□□ -0.52
CCDC40-201ENST00000269318 FHL2Q14192 279 aa11.79□□□□□ -0.52
CCDC40-201ENST00000269318 MYMXA0A1B0GTQ4 84 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 GAGE12JA6NER3 117 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 ZNF25P17030 456 aaPredicted RBP11.78□□□□□ -0.52
CCDC40-201ENST00000269318 SEC11AP67812 179 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 GAGE1Q13065 139 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 GAGE4Q13068 117 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 GAGE5Q13069 117 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 GAGE13Q4V321 117 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 NTM-AS1Q6ZSK4 140 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 APOC4P55056 127 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 HERVK_113P61574 105 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 TMEM170BQ5T4T1 132 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 Q6ZVH6 145 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 ORAOV1Q8WV07 137 aa11.78□□□□□ -0.52
CCDC40-201ENST00000269318 TRGV4A0A0C4DH28 118 aa11.77□□□□□ -0.53
CCDC40-201ENST00000269318 A0A0J9YXV3 536 aa11.77□□□□□ -0.53
CCDC40-201ENST00000269318 TIMM21Q9BVV7 248 aa11.77□□□□□ -0.53
CCDC40-201ENST00000269318 TAX1BP3O14907 124 aa11.76□□□□□ -0.53
CCDC40-201ENST00000269318 MRPS36P82909 103 aaKnown RBP11.76□□□□□ -0.53
CCDC40-201ENST00000269318 COX11Q9Y6N1 276 aa11.76□□□□□ -0.53
CCDC40-201ENST00000269318 LOC100131303A0A0U1RQF7 123 aa11.76□□□□□ -0.53
CCDC40-201ENST00000269318 ZNF22P17026 224 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-201ENST00000269318 DEFB135Q30KP9 77 aa11.76□□□□□ -0.53
CCDC40-201ENST00000269318 RNASE13Q5GAN3 156 aaKnown RBP11.76□□□□□ -0.53
CCDC40-201ENST00000269318 Q6ZUT4 128 aa11.76□□□□□ -0.53
CCDC40-201ENST00000269318 TMEM223A0PJW6 202 aa11.75□□□□□ -0.53
CCDC40-201ENST00000269318 DEFB130BP0DP73 79 aa11.75□□□□□ -0.53
CCDC40-201ENST00000269318 DEFB130AP0DP74 79 aa11.75□□□□□ -0.53
CCDC40-201ENST00000269318 SBSPONQ8IVN8 264 aa11.75□□□□□ -0.53
CCDC40-201ENST00000269318 GTSF1LQ9H1H1 148 aa11.74□□□□□ -0.53
CCDC40-201ENST00000269318 FBN1P35555 2871 aaKnown RBP11.74□□□□□ -0.53
CCDC40-201ENST00000269318 LINC00694P0DN24 101 aa11.74□□□□□ -0.53
CCDC40-201ENST00000269318 TSPEAR-AS2P59090 65 aa11.74□□□□□ -0.53
CCDC40-201ENST00000269318 ZNF815PA8K554 130 aa11.73□□□□□ -0.53
CCDC40-201ENST00000269318 IGHV4-30-4P0DP06 118 aa11.72□□□□□ -0.53
CCDC40-201ENST00000269318 CSDC2Q9Y534 153 aaKnown RBP11.72□□□□□ -0.53
CCDC40-201ENST00000269318 TAL2Q16559 108 aa11.72□□□□□ -0.53
CCDC40-201ENST00000269318 TM2D2Q9BX73 214 aa11.72□□□□□ -0.53
CCDC40-201ENST00000269318 A6NDN8 102 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms