RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 REG3AQ06141 175 aa11.04□□□□□ -0.64
CLK3-227ENST00000570296 ZFP69Q49AA0 526 aa11.04□□□□□ -0.64
CLK3-227ENST00000570296 KCNRGQ8N5I3 272 aa11.04□□□□□ -0.64
CLK3-227ENST00000570296 SERTM2A0A1B0GWG4 89 aa11.03□□□□□ -0.64
CLK3-227ENST00000570296 SMUG1Q53HV7 270 aa11.03□□□□□ -0.64
CLK3-227ENST00000570296 PRR26Q8N8Z3 221 aa11.03□□□□□ -0.64
CLK3-227ENST00000570296 SGK494Q96LW2 274 aa11.03□□□□□ -0.64
CLK3-227ENST00000570296 TAS2R45P59539 299 aa11.02□□□□□ -0.65
CLK3-227ENST00000570296 GNG5P63218 68 aa11.02□□□□□ -0.65
CLK3-227ENST00000570296 EIF5AP63241 154 aaKnown RBP11.02□□□□□ -0.65
CLK3-227ENST00000570296 RPL7L1Q6DKI1 246 aaKnown RBP11.02□□□□□ -0.65
CLK3-227ENST00000570296 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.02□□□□□ -0.65
CLK3-227ENST00000570296 SFRP2Q96HF1 295 aa11.02□□□□□ -0.65
CLK3-227ENST00000570296 A0A096LNI7 61 aa11.01□□□□□ -0.65
CLK3-227ENST00000570296 IGKV3D-20A0A0C4DH25 116 aa11.01□□□□□ -0.65
CLK3-227ENST00000570296 BCL2L11O43521 198 aa11.01□□□□□ -0.65
CLK3-227ENST00000570296 TMEM97Q5BJF2 176 aa11.01□□□□□ -0.65
CLK3-227ENST00000570296 TMUB2Q71RG4 321 aa11.01□□□□□ -0.65
CLK3-227ENST00000570296 PSMG3Q9BT73 122 aaPredicted RBP11.01□□□□□ -0.65
CLK3-227ENST00000570296 ATP6V0CP27449 155 aa11□□□□□ -0.65
CLK3-227ENST00000570296 ZNF471Q9BX82 626 aaPredicted RBP11□□□□□ -0.65
CLK3-227ENST00000570296 H3BVH4 76 aa10.99□□□□□ -0.65
CLK3-227ENST00000570296 MBP02144 154 aa10.99□□□□□ -0.65
CLK3-227ENST00000570296 SERF2P84101 59 aa10.99□□□□□ -0.65
CLK3-227ENST00000570296 GAGE6Q13070 117 aa10.99□□□□□ -0.65
CLK3-227ENST00000570296 CFAP161Q6P656 301 aa10.99□□□□□ -0.65
CLK3-227ENST00000570296 C15orf56Q8N910 161 aa10.99□□□□□ -0.65
CLK3-227ENST00000570296 MUC17Q685J3 4493 aa10.98□□□□□ -0.65
CLK3-227ENST00000570296 A0A1W2PPV4 95 aa10.98□□□□□ -0.65
CLK3-227ENST00000570296 PSG8Q9UQ74 426 aa10.98□□□□□ -0.65
CLK3-227ENST00000570296 PKIGQ9Y2B9 76 aa10.98□□□□□ -0.65
CLK3-227ENST00000570296 K7EQM0 130 aa10.97□□□□□ -0.65
CLK3-227ENST00000570296 TPT1P13693 172 aaKnown RBP10.97□□□□□ -0.65
CLK3-227ENST00000570296 NTM-AS1Q6ZSK4 140 aa10.97□□□□□ -0.65
CLK3-227ENST00000570296 NEXN-AS1Q8NBZ9 246 aa10.97□□□□□ -0.65
CLK3-227ENST00000570296 CYTL1Q9NRR1 136 aa10.97□□□□□ -0.65
CLK3-227ENST00000570296 DNLZQ5SXM8 178 aa10.96□□□□□ -0.65
CLK3-227ENST00000570296 AKR1C8PQ5T2L2 129 aa10.96□□□□□ -0.65
CLK3-227ENST00000570296 TRBV25-1A0A075B6N4 114 aa10.95□□□□□ -0.66
CLK3-227ENST00000570296 TCRAP04437 139 aa10.95□□□□□ -0.66
CLK3-227ENST00000570296 ARMS2P0C7Q2 107 aa10.95□□□□□ -0.66
CLK3-227ENST00000570296 EIF5AL1Q6IS14 154 aaKnown RBP10.95□□□□□ -0.66
CLK3-227ENST00000570296 IGLV1-50A0A075B6I6 118 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 RAB5CP51148 216 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 RAB4BP61018 213 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 RAB2AP61019 212 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 FLI1Q01543 452 aaPredicted RBP10.94□□□□□ -0.66
CLK3-227ENST00000570296 SAPCD1Q5SSQ6 148 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 PRR27Q6MZM9 219 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 PQLC2Q6ZP29 291 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 SLC51BQ86UW2 128 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 C9orf62Q8N4C0 152 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 C5orf17Q8NAS9 161 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 PHLDA3Q9Y5J5 127 aa10.94□□□□□ -0.66
CLK3-227ENST00000570296 FABP5P3A8MUU1 101 aa10.93□□□□□ -0.66
CLK3-227ENST00000570296 B4DEV8 164 aa10.93□□□□□ -0.66
CLK3-227ENST00000570296 CDC34P49427 236 aaPredicted RBP10.93□□□□□ -0.66
CLK3-227ENST00000570296 PRNTQ86SH4 94 aa10.93□□□□□ -0.66
CLK3-227ENST00000570296 FER1L6-AS1Q8NA97 138 aa10.93□□□□□ -0.66
CLK3-227ENST00000570296 C20orf203Q8NBC4 194 aa10.93□□□□□ -0.66
CLK3-227ENST00000570296 STOML3Q8TAV4 291 aa10.93□□□□□ -0.66
CLK3-227ENST00000570296 DIRC1Q969H9 104 aa10.93□□□□□ -0.66
CLK3-227ENST00000570296 ACTR3CQ9C0K3 210 aaPredicted RBP10.93□□□□□ -0.66
CLK3-227ENST00000570296 M0R381 172 aa10.92□□□□□ -0.66
CLK3-227ENST00000570296 IQCJQ1A5X6 159 aa10.92□□□□□ -0.66
CLK3-227ENST00000570296 HIGD2BQ4VC39 106 aa10.92□□□□□ -0.66
CLK3-227ENST00000570296 DERL1Q9BUN8 251 aa10.92□□□□□ -0.66
CLK3-227ENST00000570296 GFRA4Q9GZZ7 299 aa10.92□□□□□ -0.66
CLK3-227ENST00000570296 TRBV6-1A0A0K0K1D8 114 aa10.91□□□□□ -0.66
CLK3-227ENST00000570296 UMAD1C9J7I0 102 aa10.91□□□□□ -0.66
CLK3-227ENST00000570296 NKX2-5P52952 324 aaPredicted RBP10.91□□□□□ -0.66
CLK3-227ENST00000570296 ZFP82Q8N141 532 aa10.91□□□□□ -0.66
CLK3-227ENST00000570296 GVQW2A0A096LPI5 108 aaPredicted RBP10.9□□□□□ -0.66
CLK3-227ENST00000570296 A0A1B0GUV1 79 aa10.9□□□□□ -0.66
CLK3-227ENST00000570296 EIF3GO75821 320 aaKnown RBP eCLIP10.9□□□□□ -0.66
CLK3-227ENST00000570296 MT-ND6P03923 174 aa10.9□□□□□ -0.66
CLK3-227ENST00000570296 RAB24Q969Q5 203 aa10.9□□□□□ -0.66
CLK3-227ENST00000570296 IGHV1-24A0A0C4DH33 117 aa10.89□□□□□ -0.67
CLK3-227ENST00000570296 KRBOX1C9JBD0 128 aa10.89□□□□□ -0.67
CLK3-227ENST00000570296 ZNF56Q15929 161 aa10.89□□□□□ -0.67
CLK3-227ENST00000570296 CTXND1A0A1B0GTU2 59 aa10.88□□□□□ -0.67
CLK3-227ENST00000570296 HMGB3O15347 200 aaKnown RBP10.88□□□□□ -0.67
CLK3-227ENST00000570296 CXorf1O96002 111 aa10.88□□□□□ -0.67
CLK3-227ENST00000570296 SUN5Q8TC36 379 aa10.88□□□□□ -0.67
CLK3-227ENST00000570296 IGLV4-60A0A075B6I1 120 aa10.87□□□□□ -0.67
CLK3-227ENST00000570296 GRIFINA4D1Z8 144 aa10.87□□□□□ -0.67
CLK3-227ENST00000570296 GAGE12HA6NDE8 117 aa10.87□□□□□ -0.67
CLK3-227ENST00000570296 STAG3L2P0CL84 134 aa10.87□□□□□ -0.67
CLK3-227ENST00000570296 STAG3L3P0CL85 134 aa10.87□□□□□ -0.67
CLK3-227ENST00000570296 TRAV1-1A0A0B4J248 108 aa10.86□□□□□ -0.67
CLK3-227ENST00000570296 ARL14EPLP0DKL9 152 aa10.86□□□□□ -0.67
CLK3-227ENST00000570296 C1orf137Q5JT78 98 aa10.86□□□□□ -0.67
CLK3-227ENST00000570296 FAM213BQ8TBF2 198 aa10.86□□□□□ -0.67
CLK3-227ENST00000570296 H0Y9J4 135 aa10.85□□□□□ -0.67
CLK3-227ENST00000570296 M0R036 132 aa10.85□□□□□ -0.67
CLK3-227ENST00000570296 RPL13AP40429 203 aaKnown RBP10.85□□□□□ -0.67
CLK3-227ENST00000570296 SULT1A2P50226 295 aa10.85□□□□□ -0.67
CLK3-227ENST00000570296 TMEM167BQ9NRX6 74 aa10.85□□□□□ -0.67
CLK3-227ENST00000570296 EPDR1Q9UM22 224 aa10.85□□□□□ -0.67
CLK3-227ENST00000570296 MAP1LC3B2A6NCE7 125 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms