RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 ASB16-AS1Q495Z4 193 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 SPINK9Q5DT21 86 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 ADAMTSL4-AS1Q5T5F5 129 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 C14orf178Q8N769 122 aaPredicted RBP3.03□□□□□ -1.92
VPS39-212ENST00000570023 TDRD6O60522 2096 aaKnown RBP3.03□□□□□ -1.92
VPS39-212ENST00000570023 SCN3AQ9NY46 2000 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 THADAQ6YHU6 1953 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 TCF20Q9UGU0 1960 aaKnown RBP3.03□□□□□ -1.92
VPS39-212ENST00000570023 PCNX3Q9H6A9 2034 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 PCDH15Q96QU1 1955 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 IGHV5-10-1A0A0J9YXX1 117 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 hDV103S1A0JD37 113 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 EPOPA6NHQ4 379 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 JMJD7-PLA2G4BH0Y9G9 81 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 NTN3O00634 580 aaPredicted RBP3.02□□□□□ -1.93
VPS39-212ENST00000570023 S100A4P26447 101 aaKnown RBP3.02□□□□□ -1.93
VPS39-212ENST00000570023 RNASE4P34096 147 aaKnown RBP3.02□□□□□ -1.93
VPS39-212ENST00000570023 MP68P56378 58 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 ERHP84090 104 aaKnown RBP3.02□□□□□ -1.93
VPS39-212ENST00000570023 SYCNQ0VAF6 134 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 C2orf66Q6UXQ4 117 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 SOSTDC1Q6X4U4 206 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 Q6ZTC4 211 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 LINC00269Q8N2A0 174 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 LINC01560Q8TB33 94 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 RMI2Q96E14 147 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 UBL5Q9BZL1 73 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 C22orf24Q9Y442 160 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 DOCK7Q96N67 2140 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 ATG2BQ96BY7 2078 aa3.02□□□□□ -1.93
VPS39-212ENST00000570023 SCN10AQ9Y5Y9 1956 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 TRBV7-4A0A0J9YYF1 115 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 H0YGX0 51 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 M0R1W7 72 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 CCL24O00175 119 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 IGHV1-69P01742 117 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 STATHP02808 62 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 CLPSP04118 112 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 FAM229BQ4G0N7 80 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 SPANXN1Q5VSR9 72 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 ZNF833PQ6ZTB9 187 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 Q8N6K4 173 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 LITAFQ99732 161 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 LRP4O75096 1905 aa3.01□□□□□ -1.93
VPS39-212ENST00000570023 RALGAPA1Q6GYQ0 2036 aa3□□□□□ -1.93
VPS39-212ENST00000570023 EML5Q05BV3 1969 aa3□□□□□ -1.93
VPS39-212ENST00000570023 RAI1Q7Z5J4 1906 aaPredicted RBP3□□□□□ -1.93
VPS39-212ENST00000570023 TRAV22A0A0B4J277 110 aa3□□□□□ -1.93
VPS39-212ENST00000570023 C12orf77C9JDV5 145 aa3□□□□□ -1.93
VPS39-212ENST00000570023 H0YGG7 62 aa3□□□□□ -1.93
VPS39-212ENST00000570023 SAA1P0DJI8 122 aaPredicted RBP3□□□□□ -1.93
VPS39-212ENST00000570023 TSPEAR-AS2P59090 65 aa3□□□□□ -1.93
VPS39-212ENST00000570023 Q6ZRP5 223 aa3□□□□□ -1.93
VPS39-212ENST00000570023 FAM19A3Q7Z5A8 133 aa3□□□□□ -1.93
VPS39-212ENST00000570023 C17orf82Q86X59 251 aaPredicted RBP3□□□□□ -1.93
VPS39-212ENST00000570023 GPHB5Q86YW7 130 aa3□□□□□ -1.93
VPS39-212ENST00000570023 TMEM254Q8TBM7 123 aa3□□□□□ -1.93
VPS39-212ENST00000570023 LIMD2Q9BT23 127 aa3□□□□□ -1.93
VPS39-212ENST00000570023 COL4A6Q14031 1691 aa3□□□□□ -1.93
VPS39-212ENST00000570023 PHF3Q92576 2039 aaKnown RBP3□□□□□ -1.93
VPS39-212ENST00000570023 IGKV1D-37A0A075B6S9 117 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 IGHV4OR15-8A0A075B7B6 117 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 IGHV3OR16-9A0A0B4J2B5 98 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 KLLNB2CW77 178 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 PRAC2D3DTV9 90 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 H0Y9J4 135 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 BUB1B-PAK6H3BSN5 160 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 GNRH2O43555 120 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 SEC61BP60468 96 aaKnown RBP2.99□□□□□ -1.93
VPS39-212ENST00000570023 LINC01554Q52M75 96 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 ENHOQ6UWT2 76 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 MRPL36Q9P0J6 103 aaKnown RBP2.99□□□□□ -1.93
VPS39-212ENST00000570023 SNURFQ9Y675 71 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 BPTFQ12830 3046 aa2.99□□□□□ -1.93
VPS39-212ENST00000570023 COL5A1P20908 1838 aaPredicted RBP2.98□□□□□ -1.93
VPS39-212ENST00000570023 A0A087WZ39 114 aa2.98□□□□□ -1.93
VPS39-212ENST00000570023 IGLV3-19P01714 112 aa2.98□□□□□ -1.93
VPS39-212ENST00000570023 IGHV3-9P01782 118 aa2.98□□□□□ -1.93
VPS39-212ENST00000570023 IGKV3-11P04433 115 aa2.98□□□□□ -1.93
VPS39-212ENST00000570023 LINC00313P59037 77 aa2.98□□□□□ -1.93
VPS39-212ENST00000570023 NNATQ16517 81 aa2.98□□□□□ -1.93
VPS39-212ENST00000570023 FLVCR1-AS1Q8TAF5 88 aa2.98□□□□□ -1.93
VPS39-212ENST00000570023 NDUFA4L2Q9NRX3 87 aa2.98□□□□□ -1.93
VPS39-212ENST00000570023 A0A087WW49 117 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 A0A087WYN8 130 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 TRBV6-8A0A0A6YYG3 113 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 C16orf90A8MZG2 172 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 HCG22E2RYF7 251 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 C19orf84I3L1E1 186 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 GAS8-AS1O95177 125 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 LHBP01229 141 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 IGKV3-20P01619 116 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 PDE6GP18545 87 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 IGFL3Q6UXB1 125 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 CCL4L1Q8NHW4 92 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 C14orf132Q9NPU4 83 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 NDUFA12Q9UI09 145 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 KIF25-AS1Q9Y6Z4 181 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 AGRNO00468 2067 aa2.97□□□□□ -1.93
VPS39-212ENST00000570023 TRAV12-3A0A0B4J271 114 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms