RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 ZNF22P17026 224 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-204ENST00000555759 NUP210Q8TEM1 1887 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-204ENST00000555759 DEFB105AQ8NG35 78 aa13.35□□□□□ -0.27
SYNE3-204ENST00000555759 IGHV3-30P01768 117 aa13.34□□□□□ -0.27
SYNE3-204ENST00000555759 IGHV3-30-5P0DP03 117 aa13.34□□□□□ -0.27
SYNE3-204ENST00000555759 C5orf56Q8N8D9 126 aa13.34□□□□□ -0.27
SYNE3-204ENST00000555759 CNOT1A5YKK6 2376 aaKnown RBP13.34□□□□□ -0.27
SYNE3-204ENST00000555759 COX7CP15954 63 aa13.34□□□□□ -0.27
SYNE3-204ENST00000555759 EP300Q09472 2414 aaPredicted RBP13.34□□□□□ -0.27
SYNE3-204ENST00000555759 USF3Q68DE3 2245 aa13.34□□□□□ -0.27
SYNE3-204ENST00000555759 FAM240AA0A1B0GVK7 77 aa13.33□□□□□ -0.27
SYNE3-204ENST00000555759 ETDCA0A1B0GVM5 59 aa13.33□□□□□ -0.28
SYNE3-204ENST00000555759 GPHB5Q86YW7 130 aa13.33□□□□□ -0.28
SYNE3-204ENST00000555759 TRBV10-1A0A0K0K1A3 114 aa13.33□□□□□ -0.28
SYNE3-204ENST00000555759 CRIP1P50238 77 aa13.33□□□□□ -0.28
SYNE3-204ENST00000555759 DIRC1Q969H9 104 aa13.33□□□□□ -0.28
SYNE3-204ENST00000555759 DKK4Q9UBT3 224 aa13.33□□□□□ -0.28
SYNE3-204ENST00000555759 V9GYY9 64 aa13.32□□□□□ -0.28
SYNE3-204ENST00000555759 A0A096LPF7 62 aa13.32□□□□□ -0.28
SYNE3-204ENST00000555759 RPL18AQ02543 176 aaKnown RBP13.32□□□□□ -0.28
SYNE3-204ENST00000555759 ODF3Q96PU9 254 aa13.32□□□□□ -0.28
SYNE3-204ENST00000555759 SPTAN1Q13813 2472 aaKnown RBP13.32□□□□□ -0.28
SYNE3-204ENST00000555759 K7ENP7 123 aa13.32□□□□□ -0.28
SYNE3-204ENST00000555759 NDUFC1O43677 76 aa13.32□□□□□ -0.28
SYNE3-204ENST00000555759 PRB1P04280 392 aa13.31□□□□□ -0.28
SYNE3-204ENST00000555759 VPREB3Q9UKI3 123 aa13.31□□□□□ -0.28
SYNE3-204ENST00000555759 TIMM17BO60830 172 aa13.3□□□□□ -0.28
SYNE3-204ENST00000555759 Q6ZQT7 251 aa13.3□□□□□ -0.28
SYNE3-204ENST00000555759 TNRC6BQ9UPQ9 1833 aaKnown RBP13.3□□□□□ -0.28
SYNE3-204ENST00000555759 CACNA1HO95180 2353 aa13.3□□□□□ -0.28
SYNE3-204ENST00000555759 MED13Q9UHV7 2174 aa13.3□□□□□ -0.28
SYNE3-204ENST00000555759 IGLV2-11P01706 119 aa13.3□□□□□ -0.28
SYNE3-204ENST00000555759 CAMK2N2Q96S95 79 aa13.3□□□□□ -0.28
SYNE3-204ENST00000555759 IGHV4-4A0A075B6R2 117 aa13.29□□□□□ -0.28
SYNE3-204ENST00000555759 A0A0J9YX75 114 aa13.29□□□□□ -0.28
SYNE3-204ENST00000555759 LINC00308Q8TCZ7 52 aa13.29□□□□□ -0.28
SYNE3-204ENST00000555759 TMEM89A2RUT3 159 aa13.29□□□□□ -0.28
SYNE3-204ENST00000555759 INSL3P51460 131 aa13.29□□□□□ -0.28
SYNE3-204ENST00000555759 LST1O00453 97 aa13.29□□□□□ -0.28
SYNE3-204ENST00000555759 NCR3O14931 201 aa13.29□□□□□ -0.28
SYNE3-204ENST00000555759 RNF223E7ERA6 249 aa13.29□□□□□ -0.28
SYNE3-204ENST00000555759 GYPEP15421 78 aa13.29□□□□□ -0.28
SYNE3-204ENST00000555759 NACAE9PAV3 2078 aa13.28□□□□□ -0.28
SYNE3-204ENST00000555759 SP5Q6BEB4 398 aaPredicted RBP13.28□□□□□ -0.28
SYNE3-204ENST00000555759 MRPL55Q7Z7F7 128 aaKnown RBP13.28□□□□□ -0.28
SYNE3-204ENST00000555759 IGLV4-3A0A075B6K6 122 aa13.28□□□□□ -0.28
SYNE3-204ENST00000555759 NDUFA1O15239 70 aa13.28□□□□□ -0.28
SYNE3-204ENST00000555759 NOTCH4Q99466 2003 aa13.28□□□□□ -0.28
SYNE3-204ENST00000555759 Q8N7P7 452 aa13.28□□□□□ -0.28
SYNE3-204ENST00000555759 IGHV4-28A0A0C4DH34 117 aa13.27□□□□□ -0.28
SYNE3-204ENST00000555759 SPRY4Q9C004 299 aa13.27□□□□□ -0.28
SYNE3-204ENST00000555759 NCOA6Q14686 2063 aaPredicted RBP13.27□□□□□ -0.28
SYNE3-204ENST00000555759 NDUFB1O75438 58 aa13.27□□□□□ -0.28
SYNE3-204ENST00000555759 APRG1Q8IVJ8 170 aa13.27□□□□□ -0.28
SYNE3-204ENST00000555759 UBE2BP63146 152 aa13.27□□□□□ -0.29
SYNE3-204ENST00000555759 NDUFS5O43920 106 aa13.27□□□□□ -0.29
SYNE3-204ENST00000555759 USP17L23D6RBM5 183 aa13.26□□□□□ -0.29
SYNE3-204ENST00000555759 CEMP1Q6PRD7 247 aaPredicted RBP13.26□□□□□ -0.29
SYNE3-204ENST00000555759 PLA2G2CQ5R387 149 aa13.25□□□□□ -0.29
SYNE3-204ENST00000555759 TIRAPP58753 221 aa13.25□□□□□ -0.29
SYNE3-204ENST00000555759 DEFB112Q30KQ8 113 aa13.25□□□□□ -0.29
SYNE3-204ENST00000555759 FAM222AQ5U5X8 452 aa13.25□□□□□ -0.29
SYNE3-204ENST00000555759 C1orf229Q6ZS94 237 aaPredicted RBP13.25□□□□□ -0.29
SYNE3-204ENST00000555759 GTF3C1Q12789 2109 aa13.25□□□□□ -0.29
SYNE3-204ENST00000555759 IGHV4-59P01825 116 aa13.25□□□□□ -0.29
SYNE3-204ENST00000555759 ENHOQ6UWT2 76 aa13.24□□□□□ -0.29
SYNE3-204ENST00000555759 NRACQ8N912 160 aa13.24□□□□□ -0.29
SYNE3-204ENST00000555759 PYGO1Q9Y3Y4 419 aa13.24□□□□□ -0.29
SYNE3-204ENST00000555759 TRBV6-5A0A0K0K1A5 114 aa13.24□□□□□ -0.29
SYNE3-204ENST00000555759 CDKN2A-AS1Q9UH64 79 aa13.24□□□□□ -0.29
SYNE3-204ENST00000555759 BPY2O14599 106 aa13.24□□□□□ -0.29
SYNE3-204ENST00000555759 MSMPQ1L6U9 139 aa13.24□□□□□ -0.29
SYNE3-204ENST00000555759 TRBV27A0A0K0K1C4 114 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 PKIGQ9Y2B9 76 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 COX7BP24311 80 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 DEFB1P60022 68 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 NOTCH3Q9UM47 2321 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 CCDC140Q96MF4 163 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 BLCAPP62952 87 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 SVIPQ8NHG7 77 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 URB1-AS1Q96HZ7 61 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 ZMAT4Q9H898 229 aa13.23□□□□□ -0.29
SYNE3-204ENST00000555759 SLURP1P55000 103 aa13.22□□□□□ -0.29
SYNE3-204ENST00000555759 MPLKIPQ8TAP9 179 aa13.22□□□□□ -0.29
SYNE3-204ENST00000555759 TMEM263Q8WUH6 116 aaKnown RBP13.22□□□□□ -0.29
SYNE3-204ENST00000555759 IGLV10-54A0A075B6I4 117 aa13.22□□□□□ -0.29
SYNE3-204ENST00000555759 UNQ9165/PRO28630Q6UXU0 137 aa13.22□□□□□ -0.29
SYNE3-204ENST00000555759 IGKV2D-24A0A075B6R9 120 aa13.22□□□□□ -0.29
SYNE3-204ENST00000555759 CHKB-CPT1BH3BT56 60 aa13.22□□□□□ -0.29
SYNE3-204ENST00000555759 ACACAQ13085 2346 aa13.22□□□□□ -0.29
SYNE3-204ENST00000555759 IBA57-AS1B1ANH7 110 aa13.21□□□□□ -0.29
SYNE3-204ENST00000555759 FAM110AQ9BQ89 295 aa13.21□□□□□ -0.29
SYNE3-204ENST00000555759 CCL24O00175 119 aa13.21□□□□□ -0.29
SYNE3-204ENST00000555759 SPAG11BQ08648 103 aa13.21□□□□□ -0.29
SYNE3-204ENST00000555759 C10orf105Q8TEF2 133 aa13.21□□□□□ -0.29
SYNE3-204ENST00000555759 H7C423 109 aa13.2□□□□□ -0.3
SYNE3-204ENST00000555759 LINC00694P0DN24 101 aa13.2□□□□□ -0.3
SYNE3-204ENST00000555759 M0QXV9 152 aa13.2□□□□□ -0.3
SYNE3-204ENST00000555759 HHLA3Q9XRX5 114 aa13.2□□□□□ -0.3
SYNE3-204ENST00000555759 CNFNQ9BYD5 112 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms