RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 IGHV3-64A0A075B6Q5 118 aa13□□□□□ -0.33
SYNE3-202ENST00000553340 TRAV26-1A0A087WT03 109 aa13□□□□□ -0.33
SYNE3-202ENST00000553340 I3L3M4 83 aa13□□□□□ -0.33
SYNE3-202ENST00000553340 M0QXV9 152 aa13□□□□□ -0.33
SYNE3-202ENST00000553340 TRAV16A0A0A6YYK6 109 aaPredicted RBP13□□□□□ -0.33
SYNE3-202ENST00000553340 IGHV4-61A0A0C4DH41 118 aa13□□□□□ -0.33
SYNE3-202ENST00000553340 ZFHX3Q15911 3703 aa13□□□□□ -0.33
SYNE3-202ENST00000553340 IGHV1OR15-1A0A075B7D0 117 aa12.99□□□□□ -0.33
SYNE3-202ENST00000553340 A0A0J9YX75 114 aa12.99□□□□□ -0.33
SYNE3-202ENST00000553340 H7C2G1 150 aa12.99□□□□□ -0.33
SYNE3-202ENST00000553340 EIF4EBP3O60516 100 aaPredicted RBP12.99□□□□□ -0.33
SYNE3-202ENST00000553340 PIMREGQ9BSJ6 248 aa12.99□□□□□ -0.33
SYNE3-202ENST00000553340 SPTAN1Q13813 2472 aaKnown RBP12.99□□□□□ -0.33
SYNE3-202ENST00000553340 HIVEP3Q5T1R4 2406 aa12.99□□□□□ -0.33
SYNE3-202ENST00000553340 A0A0J9YXV3 536 aa12.99□□□□□ -0.33
SYNE3-202ENST00000553340 SNRPD3P62318 126 aaKnown RBP12.99□□□□□ -0.33
SYNE3-202ENST00000553340 CFHR3Q02985 330 aa12.99□□□□□ -0.33
SYNE3-202ENST00000553340 IGLV4-3A0A075B6K6 122 aa12.98□□□□□ -0.33
SYNE3-202ENST00000553340 IGF2RP11717 2491 aa12.98□□□□□ -0.33
SYNE3-202ENST00000553340 Q1RN00 199 aa12.97□□□□□ -0.33
SYNE3-202ENST00000553340 CLUHP3Q96NS8 147 aa12.97□□□□□ -0.33
SYNE3-202ENST00000553340 M0R2P5 195 aa12.96□□□□□ -0.33
SYNE3-202ENST00000553340 SPINK13Q1W4C9 94 aa12.96□□□□□ -0.33
SYNE3-202ENST00000553340 A0A0J9YXY3 114 aa12.95□□□□□ -0.34
SYNE3-202ENST00000553340 C19orf84I3L1E1 186 aa12.95□□□□□ -0.34
SYNE3-202ENST00000553340 ATXN8Q156A1 80 aa12.95□□□□□ -0.34
SYNE3-202ENST00000553340 K7EQG2 157 aa12.94□□□□□ -0.34
SYNE3-202ENST00000553340 IGHV3-30-3P0DP02 117 aa12.94□□□□□ -0.34
SYNE3-202ENST00000553340 ZFAND6Q6FIF0 208 aa12.94□□□□□ -0.34
SYNE3-202ENST00000553340 SPXQ9BT56 116 aa12.94□□□□□ -0.34
SYNE3-202ENST00000553340 ZNF580Q9UK33 172 aa12.94□□□□□ -0.34
SYNE3-202ENST00000553340 Q5PR19 223 aa12.93□□□□□ -0.34
SYNE3-202ENST00000553340 TIMM21Q9BVV7 248 aa12.93□□□□□ -0.34
SYNE3-202ENST00000553340 TRGV11A0A075B6L2 103 aa12.93□□□□□ -0.34
SYNE3-202ENST00000553340 PSMB8P28062 276 aa12.93□□□□□ -0.34
SYNE3-202ENST00000553340 TMEM95Q3KNT9 176 aa12.93□□□□□ -0.34
SYNE3-202ENST00000553340 C10orf105Q8TEF2 133 aa12.93□□□□□ -0.34
SYNE3-202ENST00000553340 PYGO1Q9Y3Y4 419 aa12.93□□□□□ -0.34
SYNE3-202ENST00000553340 CD28P10747 220 aa12.92□□□□□ -0.34
SYNE3-202ENST00000553340 LINC01620Q4KN68 170 aa12.92□□□□□ -0.34
SYNE3-202ENST00000553340 TEX29Q8N6K0 151 aa12.92□□□□□ -0.34
SYNE3-202ENST00000553340 CELSR1Q9NYQ6 3014 aa12.92□□□□□ -0.34
SYNE3-202ENST00000553340 TRBV30A0A0K0K1B3 111 aa12.92□□□□□ -0.34
SYNE3-202ENST00000553340 ELANEP08246 267 aa12.92□□□□□ -0.34
SYNE3-202ENST00000553340 NTN5Q8WTR8 489 aaPredicted RBP12.92□□□□□ -0.34
SYNE3-202ENST00000553340 MRPS36P82909 103 aaKnown RBP12.91□□□□□ -0.34
SYNE3-202ENST00000553340 ADARB2-AS1A8MUL3 147 aa12.91□□□□□ -0.34
SYNE3-202ENST00000553340 RNF183Q96D59 192 aa12.91□□□□□ -0.34
SYNE3-202ENST00000553340 ANAPC13Q9BS18 74 aa12.91□□□□□ -0.34
SYNE3-202ENST00000553340 BEX4Q9NWD9 120 aaPredicted RBP12.91□□□□□ -0.34
SYNE3-202ENST00000553340 PRSS2P07478 247 aa12.9□□□□□ -0.34
SYNE3-202ENST00000553340 MSMBP08118 114 aa12.9□□□□□ -0.35
SYNE3-202ENST00000553340 LINC01600Q96MT4 127 aa12.9□□□□□ -0.35
SYNE3-202ENST00000553340 LITAFQ99732 161 aa12.9□□□□□ -0.35
SYNE3-202ENST00000553340 CITED1Q99966 193 aa12.9□□□□□ -0.35
SYNE3-202ENST00000553340 TRIAP1O43715 76 aa12.89□□□□□ -0.35
SYNE3-202ENST00000553340 EDA2RQ9HAV5 297 aa12.89□□□□□ -0.35
SYNE3-202ENST00000553340 CCL19Q99731 98 aa12.89□□□□□ -0.35
SYNE3-202ENST00000553340 TRAV8-3A0A0A6YYJ7 113 aa12.88□□□□□ -0.35
SYNE3-202ENST00000553340 IGHV1-58A0A0C4DH39 117 aa12.88□□□□□ -0.35
SYNE3-202ENST00000553340 TRBV10-2A0A0K0K1G8 114 aa12.88□□□□□ -0.35
SYNE3-202ENST00000553340 LY6DQ14210 128 aa12.88□□□□□ -0.35
SYNE3-202ENST00000553340 FAM104AQ969W3 186 aa12.88□□□□□ -0.35
SYNE3-202ENST00000553340 IGHV3-73A0A0B4J1V6 119 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 SNCGO76070 127 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 C10orf99Q6UWK7 81 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 RNF152Q8N8N0 203 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 TNFRSF18Q9Y5U5 241 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 IGHV4-30-2A0A087WSY4 118 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 RPL13AP40429 203 aaKnown RBP12.87□□□□□ -0.35
SYNE3-202ENST00000553340 SYNJ2BPP57105 145 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 SPANXDQ9BXN6 97 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 SPANXCQ9NY87 97 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 NDUFA12Q9UI09 145 aa12.87□□□□□ -0.35
SYNE3-202ENST00000553340 CEMP1Q6PRD7 247 aaPredicted RBP12.86□□□□□ -0.35
SYNE3-202ENST00000553340 PRRC2AP48634 2157 aaKnown RBP12.86□□□□□ -0.35
SYNE3-202ENST00000553340 TMEM89A2RUT3 159 aa12.86□□□□□ -0.35
SYNE3-202ENST00000553340 HTN1P15515 57 aa12.86□□□□□ -0.35
SYNE3-202ENST00000553340 ICOSQ9Y6W8 199 aa12.86□□□□□ -0.35
SYNE3-202ENST00000553340 TEX49A0A1B0GTD5 131 aa12.85□□□□□ -0.35
SYNE3-202ENST00000553340 GAGE2BQ13066 116 aa12.85□□□□□ -0.35
SYNE3-202ENST00000553340 GAGE2EQ4V326 116 aa12.85□□□□□ -0.35
SYNE3-202ENST00000553340 ADAMTSL4-AS1Q5T5F5 129 aa12.85□□□□□ -0.35
SYNE3-202ENST00000553340 GAGE2DQ9UEU5 116 aa12.85□□□□□ -0.35
SYNE3-202ENST00000553340 AVPP01185 164 aa12.85□□□□□ -0.35
SYNE3-202ENST00000553340 COX6CP09669 75 aa12.85□□□□□ -0.35
SYNE3-202ENST00000553340 ATP5J2P56134 94 aa12.85□□□□□ -0.35
SYNE3-202ENST00000553340 PROK1P58294 105 aa12.84□□□□□ -0.35
SYNE3-202ENST00000553340 MIAQ16674 131 aa12.84□□□□□ -0.35
SYNE3-202ENST00000553340 RNASE13Q5GAN3 156 aaKnown RBP12.84□□□□□ -0.35
SYNE3-202ENST00000553340 VSIG2Q96IQ7 327 aa12.84□□□□□ -0.35
SYNE3-202ENST00000553340 DOPEY2Q9Y3R5 2298 aa12.84□□□□□ -0.35
SYNE3-202ENST00000553340 TRAV8-4A0A0B4J246 113 aa12.84□□□□□ -0.35
SYNE3-202ENST00000553340 TINCRA0A1B0GVN0 87 aa12.84□□□□□ -0.35
SYNE3-202ENST00000553340 H3BMM0 161 aa12.84□□□□□ -0.35
SYNE3-202ENST00000553340 UBE2WQ96B02 151 aa12.84□□□□□ -0.35
SYNE3-202ENST00000553340 RBMY1A1P0DJD3 496 aaKnown RBP12.83□□□□□ -0.36
SYNE3-202ENST00000553340 RBMY1CP0DJD4 496 aa12.83□□□□□ -0.36
SYNE3-202ENST00000553340 RBMY1FQ15415 496 aaKnown RBP12.83□□□□□ -0.36
SYNE3-202ENST00000553340 C2orf82Q6UX34 121 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms