RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 KRTAP4-11Q9BYQ6 195 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 ZNF580Q9UK33 172 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 CUBNO60494 3623 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 TRAV12-3A0A0B4J271 114 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 TRBV6-5A0A0K0K1A5 114 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 TRBV27A0A0K0K1C4 114 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 F5H697 171 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 H3BUA1 57 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 IGHV4-38-2P0DP08 117 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 FAM159AQ6UWV7 190 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 MDFICQ9P1T7 246 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 A8MWV9 139 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 J3QQQ9 107 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 SPINK8P0C7L1 97 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 P0DMU3 169 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 FAM231AP0DMU4 169 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 FAM231CP0DMU5 169 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 PF4V1P10720 104 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 FAM74A4Q5TZK3 123 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 Q6ZUT4 128 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 PRO1854Q9UHT4 67 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 ZNF256Q9Y2P7 627 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV3-64A0A075B6Q5 118 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 TRAV12-2A0A075B6T6 113 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 C19orf84I3L1E1 186 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 LGALS9O00182 355 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV1-69P01742 117 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 ELANEP08246 267 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 SCGB1C2P0DMR2 95 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 KLRB1Q12918 225 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 DCANP1Q8TF63 244 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 RAX2Q96IS3 184 aa4.02□□□□□ -1.77
LIMA1-212ENST00000552491 PRRC2AP48634 2157 aaKnown RBP4.02□□□□□ -1.77
LIMA1-212ENST00000552491 CREBBPQ92793 2442 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 TRAV26-1A0A087WT03 109 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 A4D1N5 150 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 M0QY20 66 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 IGKV3-20P01619 116 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 IGHG2P01859 326 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 LGALS3P17931 250 aaKnown RBP4.01□□□□□ -1.77
LIMA1-212ENST00000552491 TMEM95Q3KNT9 176 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 TRPT1Q86TN4 253 aaKnown RBP4.01□□□□□ -1.77
LIMA1-212ENST00000552491 ANKRD29Q8N6D5 301 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 GEMIN7Q9H840 131 aaKnown RBP4.01□□□□□ -1.77
LIMA1-212ENST00000552491 EPG5Q9HCE0 2579 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV3-16A0A0C4DH30 117 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV4-61A0A0C4DH41 118 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 H3BUX3 64 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 M0QXV9 152 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV4-39P01824 125 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 ZNF688P0C7X2 276 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 ID1P41134 155 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 Q5PR19 223 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 C9orf85Q96MD7 179 aa4.01□□□□□ -1.77
LIMA1-212ENST00000552491 DAZ1Q9NQZ3 744 aaKnown RBP4.01□□□□□ -1.77
LIMA1-212ENST00000552491 TMEM223A0PJW6 202 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 TMEM262E9PQX1 116 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 LEPROTO15243 131 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV3-33P01772 117 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 ZNF22P17026 224 aaPredicted RBP4□□□□□ -1.77
LIMA1-212ENST00000552491 GATA3P23771 443 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 RHOHQ15669 191 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 NSUN5P1Q3KNT7 163 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 C10orf99Q6UWK7 81 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 Q8N1Y9 231 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 TMEM263Q8WUH6 116 aaKnown RBP4□□□□□ -1.77
LIMA1-212ENST00000552491 FAM104AQ969W3 186 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 NACAE9PAV3 2078 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 TRAV2A0A0B4J234 112 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 A0A0J9YXV3 536 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 A6NDX4 124 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 H7C2G1 150 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 K7EMT4 169 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 IGLV1-40P01703 118 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 ZNF56Q15929 161 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 MUSTN1Q8IVN3 82 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 USP24Q9UPU5 2620 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 ZANQ9Y493 2812 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 ITPR1Q14643 2758 aa4□□□□□ -1.77
LIMA1-212ENST00000552491 A0A0B4J2C4 111 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 SLC25A20O43772 301 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 CFHR3Q02985 330 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 ODF3Q96PU9 254 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 Q9UF83 564 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 ERG28Q9UKR5 140 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 IGLV4-3A0A075B6K6 122 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-212ENST00000552491 A0A0J9YX75 114 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 C9JAW5 83 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 RHODO00212 210 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 PROK1P58294 105 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 SPINK13Q1W4C9 94 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 CEMP1Q6PRD7 247 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-212ENST00000552491 C20orf203Q8NBC4 194 aa3.99□□□□□ -1.77
LIMA1-212ENST00000552491 I3L3M4 83 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 PRM2P04554 102 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 UCNP55089 124 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 RNASE13Q5GAN3 156 aaKnown RBP3.98□□□□□ -1.77
LIMA1-212ENST00000552491 RNF183Q96D59 192 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 KRTAP4-5Q9BYR2 181 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms