RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 C14orf178Q8N769 122 aaPredicted RBP8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 DPH3P1Q9H4G8 78 aa8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 IGHV3-73A0A0B4J1V6 119 aa8.71□□□□□ -1.02
CLSTN3-208ENST00000538933 TRGV4A0A0C4DH28 118 aa8.71□□□□□ -1.02
CLSTN3-208ENST00000538933 ATP5G1P05496 136 aa8.71□□□□□ -1.02
CLSTN3-208ENST00000538933 HTN3P15516 51 aa8.71□□□□□ -1.02
CLSTN3-208ENST00000538933 RASL11AQ6T310 242 aa8.71□□□□□ -1.02
CLSTN3-208ENST00000538933 SPATA12Q7Z6I5 190 aa8.71□□□□□ -1.02
CLSTN3-208ENST00000538933 FAM210BQ96KR6 192 aa8.71□□□□□ -1.02
CLSTN3-208ENST00000538933 TRBV24-1A0A075B6N3 115 aa8.7□□□□□ -1.02
CLSTN3-208ENST00000538933 RS1O15537 224 aa8.7□□□□□ -1.02
CLSTN3-208ENST00000538933 CIDEAO60543 219 aa8.7□□□□□ -1.02
CLSTN3-208ENST00000538933 EVI2AP22794 236 aa8.7□□□□□ -1.02
CLSTN3-208ENST00000538933 CFAP126Q5VTH2 177 aa8.7□□□□□ -1.02
CLSTN3-208ENST00000538933 TMEM191AQ9H0A3 160 aa8.7□□□□□ -1.02
CLSTN3-208ENST00000538933 JPT2Q9H910 190 aa8.7□□□□□ -1.02
CLSTN3-208ENST00000538933 A0A1B0GXF2 115 aa8.69□□□□□ -1.02
CLSTN3-208ENST00000538933 F5H768 121 aa8.69□□□□□ -1.02
CLSTN3-208ENST00000538933 KRTAP10-2P60368 255 aa8.69□□□□□ -1.02
CLSTN3-208ENST00000538933 C6orf223Q8N319 242 aa8.69□□□□□ -1.02
CLSTN3-208ENST00000538933 LINC00612Q8N6U2 182 aa8.69□□□□□ -1.02
CLSTN3-208ENST00000538933 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.69□□□□□ -1.02
CLSTN3-208ENST00000538933 FRZBQ92765 325 aa8.69□□□□□ -1.02
CLSTN3-208ENST00000538933 HLA-DQA1P01909 254 aa8.68□□□□□ -1.02
CLSTN3-208ENST00000538933 MT-ND6P03923 174 aa8.68□□□□□ -1.02
CLSTN3-208ENST00000538933 ZFP2Q6ZN57 461 aa8.68□□□□□ -1.02
CLSTN3-208ENST00000538933 ZNF479Q96JC4 524 aa8.68□□□□□ -1.02
CLSTN3-208ENST00000538933 C18orf15Q96N68 181 aa8.68□□□□□ -1.02
CLSTN3-208ENST00000538933 SAMD10Q9BYL1 202 aa8.68□□□□□ -1.02
CLSTN3-208ENST00000538933 NBDYA0A0U1RRE5 68 aa8.67□□□□□ -1.02
CLSTN3-208ENST00000538933 H7C1H1 209 aa8.67□□□□□ -1.02
CLSTN3-208ENST00000538933 CRYGDP07320 174 aa8.67□□□□□ -1.02
CLSTN3-208ENST00000538933 RPS10P46783 165 aaKnown RBP8.67□□□□□ -1.02
CLSTN3-208ENST00000538933 AMN1Q8IY45 258 aa8.67□□□□□ -1.02
CLSTN3-208ENST00000538933 TRAPPC1Q9Y5R8 145 aa8.67□□□□□ -1.02
CLSTN3-208ENST00000538933 APCSP02743 223 aa8.66□□□□□ -1.02
CLSTN3-208ENST00000538933 FABP9Q0Z7S8 132 aa8.66□□□□□ -1.02
CLSTN3-208ENST00000538933 SLAQ13239 276 aa8.66□□□□□ -1.02
CLSTN3-208ENST00000538933 FAM104BQ5XKR9 115 aa8.66□□□□□ -1.02
CLSTN3-208ENST00000538933 TMEM136Q6ZRR5 245 aa8.66□□□□□ -1.02
CLSTN3-208ENST00000538933 GNB1LQ9BYB4 327 aa8.66□□□□□ -1.02
CLSTN3-208ENST00000538933 CKS2P33552 79 aa8.65□□□□□ -1.02
CLSTN3-208ENST00000538933 XGP55808 180 aa8.65□□□□□ -1.02
CLSTN3-208ENST00000538933 GATD1Q8NB37 220 aa8.65□□□□□ -1.02
CLSTN3-208ENST00000538933 ZNRF2Q8NHG8 242 aa8.65□□□□□ -1.02
CLSTN3-208ENST00000538933 MRAP2Q96G30 205 aa8.65□□□□□ -1.02
CLSTN3-208ENST00000538933 YPEL4Q96NS1 127 aa8.65□□□□□ -1.02
CLSTN3-208ENST00000538933 PRADC1Q9BSG0 188 aa8.65□□□□□ -1.02
CLSTN3-208ENST00000538933 MRPL18Q9H0U6 180 aaKnown RBP8.65□□□□□ -1.02
CLSTN3-208ENST00000538933 KIF25-AS1Q9Y6Z4 181 aa8.65□□□□□ -1.02
CLSTN3-208ENST00000538933 K7EQD1 137 aa8.64□□□□□ -1.03
CLSTN3-208ENST00000538933 RAB4AP20338 218 aa8.64□□□□□ -1.03
CLSTN3-208ENST00000538933 RAB5AP20339 215 aa8.64□□□□□ -1.03
CLSTN3-208ENST00000538933 RHOHQ15669 191 aa8.64□□□□□ -1.03
CLSTN3-208ENST00000538933 Q5VSD8 79 aa8.64□□□□□ -1.03
CLSTN3-208ENST00000538933 SUMO4Q6EEV6 95 aa8.64□□□□□ -1.03
CLSTN3-208ENST00000538933 PRO0255Q9UI72 69 aa8.64□□□□□ -1.03
CLSTN3-208ENST00000538933 HHLA3Q9XRX5 114 aa8.64□□□□□ -1.03
CLSTN3-208ENST00000538933 TRAV26-2A0A0B4J265 109 aa8.63□□□□□ -1.03
CLSTN3-208ENST00000538933 COLCA2A8K830 154 aa8.63□□□□□ -1.03
CLSTN3-208ENST00000538933 PAX4O43316 350 aa8.63□□□□□ -1.03
CLSTN3-208ENST00000538933 GATA1P15976 413 aaPredicted RBP8.63□□□□□ -1.03
CLSTN3-208ENST00000538933 FHL2Q14192 279 aa8.63□□□□□ -1.03
CLSTN3-208ENST00000538933 MRPL51Q4U2R6 128 aaKnown RBP8.63□□□□□ -1.03
CLSTN3-208ENST00000538933 ORMDL3Q8N138 153 aa8.63□□□□□ -1.03
CLSTN3-208ENST00000538933 RNF185Q96GF1 192 aa8.63□□□□□ -1.03
CLSTN3-208ENST00000538933 A0A0J9YY99 117 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 TRBV6-4A0A1B0GX49 114 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 D6R8Y8 96 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 NCR2O95944 276 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 PPP1R17O96001 155 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 PPBPP02775 128 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 HOXA5P20719 270 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 KIAA1644Q3SXP7 199 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 OR10J3Q5JRS4 329 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 UFSP1Q6NVU6 142 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 SLC25A29Q8N8R3 303 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 TNFRSF18Q9Y5U5 241 aa8.62□□□□□ -1.03
CLSTN3-208ENST00000538933 TRAV26-1A0A087WT03 109 aa8.61□□□□□ -1.03
CLSTN3-208ENST00000538933 SMKR1H3BMG3 65 aa8.61□□□□□ -1.03
CLSTN3-208ENST00000538933 CRYBA4P53673 196 aa8.61□□□□□ -1.03
CLSTN3-208ENST00000538933 LINC00315P59091 139 aa8.61□□□□□ -1.03
CLSTN3-208ENST00000538933 RPL36AP83881 106 aaKnown RBP8.61□□□□□ -1.03
CLSTN3-208ENST00000538933 RPL36ALQ969Q0 106 aaKnown RBP8.61□□□□□ -1.03
CLSTN3-208ENST00000538933 PRELID3AQ96N28 172 aa8.61□□□□□ -1.03
CLSTN3-208ENST00000538933 TRBV10-1A0A0K0K1A3 114 aa8.6□□□□□ -1.03
CLSTN3-208ENST00000538933 GYPEP15421 78 aa8.6□□□□□ -1.03
CLSTN3-208ENST00000538933 BTF3P20290 206 aaKnown RBP8.6□□□□□ -1.03
CLSTN3-208ENST00000538933 Q6ZSN1 163 aa8.6□□□□□ -1.03
CLSTN3-208ENST00000538933 NIT2Q9NQR4 276 aa8.6□□□□□ -1.03
CLSTN3-208ENST00000538933 GAGE12JA6NER3 117 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 M0QY20 66 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 TRGC2P03986 189 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 SRIP30626 198 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 GAGE1Q13065 139 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 GAGE4Q13068 117 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 GAGE5Q13069 117 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 GAGE13Q4V321 117 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 RPL39LQ96EH5 51 aaKnown RBP8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 DNAJC30Q96LL9 226 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms