RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 RPL39P5Q59GN2 51 aa3.52□□□□□ -1.85
HMGB1P19-201ENST00000517578 HIST2H2BCQ6DN03 193 aa3.52□□□□□ -1.85
HMGB1P19-201ENST00000517578 HIST2H2BDQ6DRA6 164 aa3.52□□□□□ -1.85
HMGB1P19-201ENST00000517578 ATP11AUNQ6ZP68 121 aa3.52□□□□□ -1.85
HMGB1P19-201ENST00000517578 Q8N2B8 174 aa3.52□□□□□ -1.85
HMGB1P19-201ENST00000517578 SPRR3Q9UBC9 169 aa3.52□□□□□ -1.85
HMGB1P19-201ENST00000517578 NDUFA12Q9UI09 145 aa3.52□□□□□ -1.85
HMGB1P19-201ENST00000517578 INTS1Q8N201 2190 aaKnown RBP3.52□□□□□ -1.85
HMGB1P19-201ENST00000517578 DIDO1Q9BTC0 2240 aaKnown RBP3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 TRAV23DV6A0A075B6W5 121 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGKV3D-15A0A087WSY6 115 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGHV3-43A0A0B4J1X8 118 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGHV5-51A0A0C4DH38 117 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 M0R378 163 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 SAA2P0DJI9 122 aaPredicted RBP3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGHV3-43DP0DP04 118 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 FUSP35637 526 aaKnown RBP eCLIP3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 RPL28P46779 137 aaKnown RBP3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 UBE2AP49459 152 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 SS18Q15532 418 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 DEFB110Q30KQ9 67 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 SERTAD4-AS1Q5TG53 156 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 CXCL17Q6UXB2 119 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 C14orf178Q8N769 122 aaPredicted RBP3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 MPLKIPQ8TAP9 179 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 DCTN5Q9BTE1 182 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 DEFB126Q9BYW3 111 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 LINC00574Q9H8X3 128 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 LINC00846Q9NV44 126 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 MSRB1Q9NZV6 116 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 LINC00474Q9P2X8 69 aa3.51□□□□□ -1.85
HMGB1P19-201ENST00000517578 FER1L5A0AVI2 2057 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 TRAV12-3A0A0B4J271 114 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGHV1-18A0A0C4DH31 117 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 TRBV6-5A0A0K0K1A5 114 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 TRBV12-3P01733 135 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 PATE4P0C8F1 98 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 CGB3P0DN86 165 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 CGB7P0DN87 165 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGHV3-30-3P0DP02 117 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 LCA10Q71F78 164 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 KRTAP1-5Q9BYS1 174 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 CYP4F30PQ9H0H9 118 aa3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 RAI1Q7Z5J4 1906 aaPredicted RBP3.5□□□□□ -1.85
HMGB1P19-201ENST00000517578 A0A087WVE0 104 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 E7EQL1 145 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 TMEM256-PLSCR3K7ERE1 68 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 S100A4P26447 101 aaKnown RBP3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 RPL27AP46776 148 aaKnown RBP3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 POLR2KP53803 58 aaKnown RBP3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 TSPEAR-AS2P59090 65 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 WT1-ASQ06250 92 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 ZNF833PQ6ZTB9 187 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 C6orf223Q8N319 242 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 RPL36ALQ969Q0 106 aaKnown RBP3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 LITAFQ99732 161 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 OPRPNQ99935 248 aaPredicted RBP3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 RNF5Q99942 180 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 RNF186Q9NXI6 227 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 ORMDL1Q9P0S3 153 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 CTSZQ9UBR2 303 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 CCL26Q9Y258 94 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 LINC00588Q9Y4M8 146 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 MED12Q93074 2177 aa3.49□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGLV3-12A0A075B6K2 115 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGHV3-15A0A0B4J1V0 119 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 K7EMT4 169 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 NDUFA1O15239 70 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 ZNHIT1O43257 154 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 ZNF73O43830 326 aaPredicted RBP3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 LINC00205P59089 165 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 PIK3CD-AS1Q5SR53 167 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 ADAMTSL4-AS1Q5T5F5 129 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 ENHOQ6UWT2 76 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 LIMD2Q9BT23 127 aa3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 RPP25Q9BUL9 199 aaKnown RBP3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 PRRC2AP48634 2157 aaKnown RBP3.48□□□□□ -1.85
HMGB1P19-201ENST00000517578 TRAV21A0A0B4J279 112 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGHV7-4-1A0A0J9YVY3 117 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 IGHV5-10-1A0A0J9YXX1 117 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 E7EUB6 86 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 PRYO14603 147 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 CRPP02741 224 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 RNASE4P34096 147 aaKnown RBP3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 LPAL2Q16609 132 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 C7orf65Q6ZTY9 151 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 Q8N6K4 173 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 TMEM254Q8TBM7 123 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 LINC00308Q8TCZ7 52 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 C14orf132Q9NPU4 83 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 C2orf16Q68DN1 1984 aa3.47□□□□□ -1.85
HMGB1P19-201ENST00000517578 POLEQ07864 2286 aa3.46□□□□□ -1.85
HMGB1P19-201ENST00000517578 COL4A5P29400 1685 aa3.46□□□□□ -1.85
HMGB1P19-201ENST00000517578 PCNX2A6NKB5 2137 aa3.46□□□□□ -1.86
HMGB1P19-201ENST00000517578 ZNF407Q9C0G0 2248 aa3.46□□□□□ -1.86
HMGB1P19-201ENST00000517578 IGKV2-40A0A087WW87 121 aaPredicted RBP3.46□□□□□ -1.86
HMGB1P19-201ENST00000517578 A0A087X002 238 aa3.46□□□□□ -1.86
HMGB1P19-201ENST00000517578 IGKV3D-20A0A0C4DH25 116 aa3.46□□□□□ -1.86
HMGB1P19-201ENST00000517578 TRBV7-4A0A0J9YYF1 115 aa3.46□□□□□ -1.86
HMGB1P19-201ENST00000517578 SRRM5B3KS81 715 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms