RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 SPTAN1Q13813 2472 aaKnown RBP3.64□□□□□ -1.83
NUP54-210ENST00000510884 ZNF831Q5JPB2 1677 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 TRBV25-1A0A075B6N4 114 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 IGKV1D-43A0A0B4J1Z2 117 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 A0A1W2PQD3 144 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 C11orf94C9JXX5 98 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 BUB1B-PAK6H3BSN5 160 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 PRM2P04554 102 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 HMGN2P05204 90 aaKnown RBP3.63□□□□□ -1.83
NUP54-210ENST00000510884 PIRTP0C851 137 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 UBE2D1P51668 147 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 CRYBA2P53672 197 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 KRTAP21-3Q3LHN1 58 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 LINC00242Q5T6M2 205 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 RPRMLQ8N4K4 120 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 LINC00167Q96N53 147 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 SPRR3Q9UBC9 169 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 HEATR5AQ86XA9 2040 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 SIP14410 1827 aa3.63□□□□□ -1.83
NUP54-210ENST00000510884 IGSF10Q6WRI0 2623 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 COL4A4P53420 1690 aaPredicted RBP3.62□□□□□ -1.83
NUP54-210ENST00000510884 TRBV7-3A0A075B6L6 115 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 IGKV1-9A0A0C4DH69 117 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 SMIM27A0A1W2PRY6 76 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 EPOPA6NHQ4 379 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 H7BZZ5 65 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 K7EQG2 157 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 PEX7O00628 323 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 IFI6P09912 130 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 XCL1P47992 114 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 FXYD6P3P58550 94 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 PLGLAQ15195 96 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 SPANXN1Q5VSR9 72 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 CEMP1Q6PRD7 247 aaPredicted RBP3.62□□□□□ -1.83
NUP54-210ENST00000510884 CLECL1Q8IZS7 167 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 FAM216BQ8N7L0 139 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 C2CD3Q4AC94 2353 aa3.62□□□□□ -1.83
NUP54-210ENST00000510884 EP300Q09472 2414 aaPredicted RBP3.62□□□□□ -1.83
NUP54-210ENST00000510884 NF1P21359 2839 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 LTAP01374 205 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 COX6CP09669 75 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 CD28P10747 220 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 RNASE4P34096 147 aaKnown RBP3.61□□□□□ -1.83
NUP54-210ENST00000510884 DYNLT1P63172 113 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 C2orf82Q6UX34 121 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 VMO1Q7Z5L0 202 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 GPHB5Q86YW7 130 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 RNASE6Q93091 150 aaKnown RBP3.61□□□□□ -1.83
NUP54-210ENST00000510884 RMI2Q96E14 147 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 Q96M85 177 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 DOCK6Q96HP0 2047 aa3.61□□□□□ -1.83
NUP54-210ENST00000510884 FREM2Q5SZK8 3169 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 NINQ8N4C6 2090 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 CELSR3Q9NYQ7 3312 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 TRAV7A0A075B6U4 112 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 IGHV3OR16-13A0A075B7E8 117 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 TRBV10-3A0A0K0K1G6 114 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 FAM168BA1KXE4 195 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 LY6G6DO95868 133 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 C16orf47Q6ZP98 133 aaPredicted RBP3.6□□□□□ -1.83
NUP54-210ENST00000510884 MED12LQ86YW9 2145 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 CYP4F30PQ9H0H9 118 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 V9GYV3 84 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 WDFY3Q8IZQ1 3526 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 EXPH5Q8NEV8 1989 aa3.6□□□□□ -1.83
NUP54-210ENST00000510884 NAV3Q8IVL0 2385 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 TMSB15BA0A087X1C1 80 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 TRBV7-1A0A0A6YYK4 115 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 TRGV8A0A0C4DH27 118 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 LINC01549A6NIU2 74 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 PRB2P02812 416 aaPredicted RBP3.59□□□□□ -1.83
NUP54-210ENST00000510884 SUPT4H1P63272 117 aaKnown RBP3.59□□□□□ -1.83
NUP54-210ENST00000510884 ZNF826PQ6ZT77 177 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 PRNTQ86SH4 94 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 LINC01555Q8NAE3 123 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 WFDC5Q8TCV5 224 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 CHCHD10Q8WYQ3 142 aaPredicted RBP3.59□□□□□ -1.83
NUP54-210ENST00000510884 CLEC2BQ92478 149 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 C11orf1Q9H5F2 150 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 ZNF702PQ9H963 129 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 XAGE1AQ9HD64 81 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 TAC3Q9UHF0 121 aa3.59□□□□□ -1.83
NUP54-210ENST00000510884 PLXNA3P51805 1871 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 PLXNA1Q9UIW2 1896 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 SCN2AQ99250 2005 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 LAMA5O15230 3695 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 A0A0G2JRQ6 117 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 RPL37AP8A6NKH3 93 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 IQCF6A8MYZ5 107 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 SH2D1AO60880 128 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 ERC2-IT1O76042 136 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 WISP3O95389 354 aaPredicted RBP3.58□□□□□ -1.84
NUP54-210ENST00000510884 PLNP26678 52 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 RPL38P63173 70 aaKnown RBP3.58□□□□□ -1.84
NUP54-210ENST00000510884 MIR17HGQ75NE6 70 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 CYSTM1Q9H1C7 97 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 PRO1854Q9UHT4 67 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 ZNF706Q9Y5V0 76 aaPredicted RBP3.58□□□□□ -1.84
NUP54-210ENST00000510884 ZNF236Q9UL36 1845 aa3.58□□□□□ -1.84
NUP54-210ENST00000510884 PIKFYVEQ9Y2I7 2098 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 132.3 ms