RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 SCP2D1Q9UJQ7 156 aa-0.37□□□□□ -2.47
SMC4-223ENST00000493695 ARHGEF10O15013 1369 aa-0.37□□□□□ -2.47
SMC4-223ENST00000493695 NCOR1O75376 2440 aa-0.37□□□□□ -2.47
SMC4-223ENST00000493695 CEP152O94986 1710 aa-0.38□□□□□ -2.47
SMC4-223ENST00000493695 KMT2AQ03164 3969 aa-0.38□□□□□ -2.47
SMC4-223ENST00000493695 MACF1Q9UPN3 7388 aaKnown RBP-0.38□□□□□ -2.47
SMC4-223ENST00000493695 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.38□□□□□ -2.47
SMC4-223ENST00000493695 M0R129 80 aa-0.38□□□□□ -2.47
SMC4-223ENST00000493695 ARPC5O15511 151 aa-0.38□□□□□ -2.47
SMC4-223ENST00000493695 ZMYM4Q5VZL5 1548 aa-0.38□□□□□ -2.47
SMC4-223ENST00000493695 DAPK1P53355 1430 aa-0.38□□□□□ -2.47
SMC4-223ENST00000493695 DOCK11Q5JSL3 2073 aa-0.39□□□□□ -2.47
SMC4-223ENST00000493695 GCHFRP30047 84 aa-0.39□□□□□ -2.47
SMC4-223ENST00000493695 Q6ZUT4 128 aa-0.39□□□□□ -2.47
SMC4-223ENST00000493695 CTAGE3PQ8IX95 158 aa-0.39□□□□□ -2.47
SMC4-223ENST00000493695 RPRMQ9NS64 109 aa-0.39□□□□□ -2.47
SMC4-223ENST00000493695 GSKIPQ9P0R6 139 aa-0.39□□□□□ -2.47
SMC4-223ENST00000493695 BIVM-ERCC5R4GMW8 1640 aa-0.39□□□□□ -2.47
SMC4-223ENST00000493695 HSPG2P98160 4391 aa-0.39□□□□□ -2.47
SMC4-223ENST00000493695 MYH6P13533 1939 aa-0.4□□□□□ -2.47
SMC4-223ENST00000493695 SMIM3Q9BZL3 60 aa-0.4□□□□□ -2.47
SMC4-223ENST00000493695 CYP4F30PQ9H0H9 118 aa-0.4□□□□□ -2.47
SMC4-223ENST00000493695 FHAD1B1AJZ9 1412 aa-0.4□□□□□ -2.47
SMC4-223ENST00000493695 FAM208BQ5VWN6 2430 aa-0.4□□□□□ -2.47
SMC4-223ENST00000493695 LRRC37A3O60309 1634 aa-0.41□□□□□ -2.47
SMC4-223ENST00000493695 MYCBP2O75592 4640 aa-0.42□□□□□ -2.48
SMC4-223ENST00000493695 TRBV10-3A0A0K0K1G6 114 aa-0.42□□□□□ -2.48
SMC4-223ENST00000493695 ZNF815PA8K554 130 aa-0.42□□□□□ -2.48
SMC4-223ENST00000493695 C10orf142B7Z368 130 aa-0.42□□□□□ -2.48
SMC4-223ENST00000493695 UBE2G1P62253 170 aa-0.42□□□□□ -2.48
SMC4-223ENST00000493695 SSBP3-AS1Q7Z2R9 100 aa-0.42□□□□□ -2.48
SMC4-223ENST00000493695 UBE2DNLQ8IWF7 75 aa-0.42□□□□□ -2.48
SMC4-223ENST00000493695 UNC13AQ9UPW8 1703 aa-0.42□□□□□ -2.48
SMC4-223ENST00000493695 PKD1L1Q8TDX9 2849 aa-0.42□□□□□ -2.48
SMC4-223ENST00000493695 LPAP08519 4548 aa-0.43□□□□□ -2.48
SMC4-223ENST00000493695 IFT172Q9UG01 1749 aa-0.43□□□□□ -2.48
SMC4-223ENST00000493695 IFNA17P01571 189 aa-0.43□□□□□ -2.48
SMC4-223ENST00000493695 SCIMPQ6UWF3 145 aa-0.43□□□□□ -2.48
SMC4-223ENST00000493695 ZNF818PQ6ZRF7 136 aa-0.43□□□□□ -2.48
SMC4-223ENST00000493695 TRAV1-2A0A0B4J238 106 aa-0.44□□□□□ -2.48
SMC4-223ENST00000493695 J3QR89 54 aa-0.44□□□□□ -2.48
SMC4-223ENST00000493695 M0R2Z0 102 aa-0.44□□□□□ -2.48
SMC4-223ENST00000493695 NPFFO15130 113 aa-0.44□□□□□ -2.48
SMC4-223ENST00000493695 ALX1Q15699 326 aa-0.44□□□□□ -2.48
SMC4-223ENST00000493695 CNFNQ9BYD5 112 aa-0.44□□□□□ -2.48
SMC4-223ENST00000493695 SPTBN2O15020 2390 aa-0.44□□□□□ -2.48
SMC4-223ENST00000493695 PXDNQ92626 1479 aa-0.44□□□□□ -2.48
SMC4-223ENST00000493695 NHSL1Q5SYE7 1610 aa-0.45□□□□□ -2.48
SMC4-223ENST00000493695 PTPN13Q12923 2485 aa-0.45□□□□□ -2.48
SMC4-223ENST00000493695 CHD6Q8TD26 2715 aa-0.45□□□□□ -2.48
SMC4-223ENST00000493695 APOC4-APOC2K7ER74 178 aa-0.45□□□□□ -2.48
SMC4-223ENST00000493695 PIN1P1O15428 100 aa-0.45□□□□□ -2.48
SMC4-223ENST00000493695 IL5P05113 134 aa-0.45□□□□□ -2.48
SMC4-223ENST00000493695 CBLN1P23435 193 aa-0.45□□□□□ -2.48
SMC4-223ENST00000493695 LRP2P98164 4655 aa-0.46□□□□□ -2.48
SMC4-223ENST00000493695 SPINK8P0C7L1 97 aa-0.46□□□□□ -2.48
SMC4-223ENST00000493695 PIPP12273 146 aaPredicted RBP-0.46□□□□□ -2.48
SMC4-223ENST00000493695 RRAS2P62070 204 aaPredicted RBP-0.46□□□□□ -2.48
SMC4-223ENST00000493695 RPL7L1Q6DKI1 246 aaKnown RBP-0.46□□□□□ -2.48
SMC4-223ENST00000493695 SDF2Q99470 211 aa-0.46□□□□□ -2.48
SMC4-223ENST00000493695 PSMG3Q9BT73 122 aaPredicted RBP-0.46□□□□□ -2.48
SMC4-223ENST00000493695 ANKRD17O75179 2603 aaKnown RBP-0.46□□□□□ -2.48
SMC4-223ENST00000493695 VWFP04275 2813 aa-0.47□□□□□ -2.48
SMC4-223ENST00000493695 A6NIN4 97 aa-0.47□□□□□ -2.48
SMC4-223ENST00000493695 IFITM1P13164 125 aa-0.47□□□□□ -2.48
SMC4-223ENST00000493695 CCL8P80075 99 aa-0.47□□□□□ -2.48
SMC4-223ENST00000493695 MYOM3Q5VTT5 1437 aa-0.47□□□□□ -2.49
SMC4-223ENST00000493695 CASKIN1Q8WXD9 1431 aa-0.47□□□□□ -2.49
SMC4-223ENST00000493695 NDUFB6O95139 128 aa-0.48□□□□□ -2.49
SMC4-223ENST00000493695 GUCA1AP43080 201 aaPredicted RBP-0.48□□□□□ -2.49
SMC4-223ENST00000493695 SMIM21Q3B7S5 101 aa-0.48□□□□□ -2.49
SMC4-223ENST00000493695 ANP32BQ92688 251 aaKnown RBP-0.48□□□□□ -2.49
SMC4-223ENST00000493695 SPTSSAQ969W0 71 aa-0.48□□□□□ -2.49
SMC4-223ENST00000493695 TNXBP22105 4242 aa-0.48□□□□□ -2.49
SMC4-223ENST00000493695 IFT140Q96RY7 1462 aa-0.48□□□□□ -2.49
SMC4-223ENST00000493695 FLNAP21333 2647 aaKnown RBP-0.49□□□□□ -2.49
SMC4-223ENST00000493695 NWD2Q9ULI1 1742 aa-0.49□□□□□ -2.49
SMC4-223ENST00000493695 A0A0D9SFI3 127 aa-0.49□□□□□ -2.49
SMC4-223ENST00000493695 LOC105371267A0A1B0GV96 52 aa-0.49□□□□□ -2.49
SMC4-223ENST00000493695 K7ERU9 68 aa-0.49□□□□□ -2.49
SMC4-223ENST00000493695 RPS25P62851 125 aaKnown RBP-0.49□□□□□ -2.49
SMC4-223ENST00000493695 LZICQ8WZA0 190 aa-0.49□□□□□ -2.49
SMC4-223ENST00000493695 COPZ2Q9P299 210 aa-0.49□□□□□ -2.49
SMC4-223ENST00000493695 AKAP6Q13023 2319 aa-0.49□□□□□ -2.49
SMC4-223ENST00000493695 LAMC1P11047 1609 aa-0.49□□□□□ -2.49
SMC4-223ENST00000493695 PRDM2Q13029 1718 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 C2CD3Q4AC94 2353 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 BAGE3Q86Y29 109 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 SPTSSBQ8NFR3 76 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 TMEM191AQ9H0A3 160 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 PRO0255Q9UI72 69 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 LINC00312Q9Y6C7 94 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 ZNF609O15014 1411 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 ZNF518AQ6AHZ1 1483 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 PTPRQQ9UMZ3 2332 aa-0.5□□□□□ -2.49
SMC4-223ENST00000493695 SPAARA0A1B0GVQ0 90 aa-0.51□□□□□ -2.49
SMC4-223ENST00000493695 CCL18P55774 89 aa-0.51□□□□□ -2.49
SMC4-223ENST00000493695 WFDC2Q14508 124 aa-0.51□□□□□ -2.49
SMC4-223ENST00000493695 TSTD1Q8NFU3 115 aa-0.51□□□□□ -2.49
SMC4-223ENST00000493695 FAT2Q9NYQ8 4349 aa-0.51□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms