RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TRAV8-6A0A0B4J262 113 aa10.81□□□□□ -0.68
UPF3A-208ENST00000484246 TNP2Q05952 138 aa10.81□□□□□ -0.68
UPF3A-208ENST00000484246 LINC01556Q5JQF7 62 aa10.81□□□□□ -0.68
UPF3A-208ENST00000484246 C15orf54Q8N8G6 183 aa10.81□□□□□ -0.68
UPF3A-208ENST00000484246 V9GYV3 84 aa10.81□□□□□ -0.68
UPF3A-208ENST00000484246 DNAH17Q9UFH2 4485 aa10.8□□□□□ -0.68
UPF3A-208ENST00000484246 IGHV3-38A0A0C4DH36 116 aa10.8□□□□□ -0.68
UPF3A-208ENST00000484246 EVI2AP22794 236 aa10.8□□□□□ -0.68
UPF3A-208ENST00000484246 NEXN-AS1Q8NBZ9 246 aa10.8□□□□□ -0.68
UPF3A-208ENST00000484246 DPH3P1Q9H4G8 78 aa10.8□□□□□ -0.68
UPF3A-208ENST00000484246 FRAS1Q86XX4 4008 aa10.8□□□□□ -0.68
UPF3A-208ENST00000484246 TRAV9-2A0A087WT02 112 aa10.79□□□□□ -0.68
UPF3A-208ENST00000484246 H7C1H1 209 aa10.79□□□□□ -0.68
UPF3A-208ENST00000484246 M0QY20 66 aa10.79□□□□□ -0.68
UPF3A-208ENST00000484246 SSTP61278 116 aa10.79□□□□□ -0.68
UPF3A-208ENST00000484246 ADIRFQ15847 76 aa10.79□□□□□ -0.68
UPF3A-208ENST00000484246 C10orf126Q8N4M7 172 aa10.79□□□□□ -0.68
UPF3A-208ENST00000484246 PCLOQ9Y6V0 5065 aa10.78□□□□□ -0.68
UPF3A-208ENST00000484246 A0A1B0GVY2 172 aa10.78□□□□□ -0.68
UPF3A-208ENST00000484246 PRSS29PA6NIE9 313 aa10.78□□□□□ -0.68
UPF3A-208ENST00000484246 HIGD1CA8MV81 97 aa10.78□□□□□ -0.68
UPF3A-208ENST00000484246 F5H697 171 aa10.78□□□□□ -0.68
UPF3A-208ENST00000484246 TWIST1Q15672 202 aa10.78□□□□□ -0.68
UPF3A-208ENST00000484246 OR10J3Q5JRS4 329 aa10.78□□□□□ -0.68
UPF3A-208ENST00000484246 SUMO4Q6EEV6 95 aa10.78□□□□□ -0.68
UPF3A-208ENST00000484246 DNAJC30Q96LL9 226 aa10.78□□□□□ -0.68
UPF3A-208ENST00000484246 MGPP08493 103 aa10.77□□□□□ -0.69
UPF3A-208ENST00000484246 FRZBQ92765 325 aa10.77□□□□□ -0.69
UPF3A-208ENST00000484246 PGLYRP4Q96LB8 373 aa10.77□□□□□ -0.69
UPF3A-208ENST00000484246 HECTD4Q9Y4D8 3996 aa10.76□□□□□ -0.69
UPF3A-208ENST00000484246 A0A1B0GUT8 65 aa10.76□□□□□ -0.69
UPF3A-208ENST00000484246 UQCC3Q6UW78 93 aa10.76□□□□□ -0.69
UPF3A-208ENST00000484246 Q6ZRN7 208 aaPredicted RBP10.76□□□□□ -0.69
UPF3A-208ENST00000484246 DAZ4Q86SG3 579 aaKnown RBP10.76□□□□□ -0.69
UPF3A-208ENST00000484246 BORCS7Q96B45 105 aa10.76□□□□□ -0.69
UPF3A-208ENST00000484246 DAZ3Q9NR90 486 aaKnown RBP10.76□□□□□ -0.69
UPF3A-208ENST00000484246 PNRC1Q12796 327 aaPredicted RBP10.75□□□□□ -0.69
UPF3A-208ENST00000484246 TMEM97Q5BJF2 176 aa10.75□□□□□ -0.69
UPF3A-208ENST00000484246 RASL11AQ6T310 242 aa10.75□□□□□ -0.69
UPF3A-208ENST00000484246 SMIM15Q7Z3B0 74 aa10.75□□□□□ -0.69
UPF3A-208ENST00000484246 NFE4Q86UQ8 179 aa10.75□□□□□ -0.69
UPF3A-208ENST00000484246 SMIM27A0A1W2PRY6 76 aa10.74□□□□□ -0.69
UPF3A-208ENST00000484246 NUP35Q8NFH5 326 aa10.74□□□□□ -0.69
UPF3A-208ENST00000484246 CHCHD7Q9BUK0 85 aa10.74□□□□□ -0.69
UPF3A-208ENST00000484246 NAT8BQ9UHF3 227 aa10.74□□□□□ -0.69
UPF3A-208ENST00000484246 TRBV6-8A0A0A6YYG3 113 aa10.73□□□□□ -0.69
UPF3A-208ENST00000484246 IBA57-AS1B1ANH7 110 aa10.73□□□□□ -0.69
UPF3A-208ENST00000484246 LAGE3Q14657 143 aa10.73□□□□□ -0.69
UPF3A-208ENST00000484246 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.73□□□□□ -0.69
UPF3A-208ENST00000484246 TMEM191AQ9H0A3 160 aa10.73□□□□□ -0.69
UPF3A-208ENST00000484246 NIT2Q9NQR4 276 aa10.73□□□□□ -0.69
UPF3A-208ENST00000484246 RYR1P21817 5038 aa10.73□□□□□ -0.69
UPF3A-208ENST00000484246 NIT1Q86X76 327 aa10.72□□□□□ -0.69
UPF3A-208ENST00000484246 TNFRSF18Q9Y5U5 241 aa10.72□□□□□ -0.69
UPF3A-208ENST00000484246 RIGQ13278 110 aa10.71□□□□□ -0.69
UPF3A-208ENST00000484246 GATD1Q8NB37 220 aa10.71□□□□□ -0.69
UPF3A-208ENST00000484246 A0A1B0GW15 77 aa10.7□□□□□ -0.7
UPF3A-208ENST00000484246 PPP1R2P9O14990 202 aa10.7□□□□□ -0.7
UPF3A-208ENST00000484246 PKIAP61925 76 aa10.7□□□□□ -0.7
UPF3A-208ENST00000484246 IQCJQ1A5X6 159 aa10.7□□□□□ -0.7
UPF3A-208ENST00000484246 NTM-AS1Q6ZSK4 140 aa10.69□□□□□ -0.7
UPF3A-208ENST00000484246 TRBV6-5A0A0K0K1A5 114 aa10.68□□□□□ -0.7
UPF3A-208ENST00000484246 TMEM218A2RU14 115 aa10.68□□□□□ -0.7
UPF3A-208ENST00000484246 IGHV3-30P01768 117 aa10.68□□□□□ -0.7
UPF3A-208ENST00000484246 IGHV3-33P01772 117 aa10.68□□□□□ -0.7
UPF3A-208ENST00000484246 IGHV3-30-3P0DP02 117 aa10.68□□□□□ -0.7
UPF3A-208ENST00000484246 IGHV3-30-5P0DP03 117 aa10.68□□□□□ -0.7
UPF3A-208ENST00000484246 Q8N3U1 123 aa10.68□□□□□ -0.7
UPF3A-208ENST00000484246 MRAP2Q96G30 205 aa10.68□□□□□ -0.7
UPF3A-208ENST00000484246 RNF185Q96GF1 192 aa10.68□□□□□ -0.7
UPF3A-208ENST00000484246 TRBV25-1A0A075B6N4 114 aa10.67□□□□□ -0.7
UPF3A-208ENST00000484246 TRAV26-2A0A0B4J265 109 aa10.67□□□□□ -0.7
UPF3A-208ENST00000484246 LINC00862A6NCI5 91 aa10.67□□□□□ -0.7
UPF3A-208ENST00000484246 ADCYAP1P18509 176 aa10.67□□□□□ -0.7
UPF3A-208ENST00000484246 KCNIP4Q6PIL6 250 aa10.67□□□□□ -0.7
UPF3A-208ENST00000484246 ANAPC16Q96DE5 110 aa10.67□□□□□ -0.7
UPF3A-208ENST00000484246 URGCP-MRPS24S4R325 110 aa10.67□□□□□ -0.7
UPF3A-208ENST00000484246 DNAH11Q96DT5 4516 aa10.66□□□□□ -0.7
UPF3A-208ENST00000484246 A0A1B0GXF2 115 aa10.66□□□□□ -0.7
UPF3A-208ENST00000484246 MT-ND4LP03901 98 aa10.66□□□□□ -0.7
UPF3A-208ENST00000484246 RAB4AP20338 218 aa10.66□□□□□ -0.7
UPF3A-208ENST00000484246 ELOBQ15370 118 aa10.66□□□□□ -0.7
UPF3A-208ENST00000484246 COMMD7Q86VX2 200 aa10.66□□□□□ -0.7
UPF3A-208ENST00000484246 A0A087WX48 190 aa10.65□□□□□ -0.7
UPF3A-208ENST00000484246 TRAV8-3A0A0A6YYJ7 113 aa10.65□□□□□ -0.7
UPF3A-208ENST00000484246 IGHV1-24A0A0C4DH33 117 aa10.65□□□□□ -0.7
UPF3A-208ENST00000484246 S100A8P05109 93 aa10.65□□□□□ -0.7
UPF3A-208ENST00000484246 ATP5L2Q7Z4Y8 100 aa10.65□□□□□ -0.7
UPF3A-208ENST00000484246 AMN1Q8IY45 258 aa10.65□□□□□ -0.7
UPF3A-208ENST00000484246 RPL39LQ96EH5 51 aaKnown RBP10.65□□□□□ -0.7
UPF3A-208ENST00000484246 PKD1P98161 4303 aa10.65□□□□□ -0.7
UPF3A-208ENST00000484246 NCR2O95944 276 aa10.64□□□□□ -0.71
UPF3A-208ENST00000484246 CHCHD5Q9BSY4 110 aa10.64□□□□□ -0.71
UPF3A-208ENST00000484246 SEC11CQ9BY50 192 aa10.64□□□□□ -0.71
UPF3A-208ENST00000484246 HBBP68871 147 aa10.63□□□□□ -0.71
UPF3A-208ENST00000484246 COTL1Q14019 142 aa10.63□□□□□ -0.71
UPF3A-208ENST00000484246 MPV17L2Q567V2 206 aa10.63□□□□□ -0.71
UPF3A-208ENST00000484246 FAM104BQ5XKR9 115 aa10.63□□□□□ -0.71
UPF3A-208ENST00000484246 ATRAIDQ6UW56 229 aa10.63□□□□□ -0.71
UPF3A-208ENST00000484246 TMEM243Q9BU79 118 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms