RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 NISCHQ9Y2I1 1504 aa38.68■■■■□ 3.78
UPF3A-208ENST00000484246 CCDC180Q9P1Z9 1646 aa34.37■■■■□ 3.09
UPF3A-208ENST00000484246 ABCC9O60706 1549 aa33.44■■■□□ 2.94
UPF3A-208ENST00000484246 NACADO15069 1562 aa32.32■■■□□ 2.76
UPF3A-208ENST00000484246 ZCCHC6Q5VYS8 1495 aaKnown RBP32.29■■■□□ 2.76
UPF3A-208ENST00000484246 RB1CC1Q8TDY2 1594 aa32.28■■■□□ 2.76
UPF3A-208ENST00000484246 MYO15BQ96JP2 1530 aa32.26■■■□□ 2.75
UPF3A-208ENST00000484246 DCAF1Q9Y4B6 1507 aa32.12■■■□□ 2.73
UPF3A-208ENST00000484246 DCAF8L2P0C7V8 631 aa32.01■■■□□ 2.71
UPF3A-208ENST00000484246 AEBP2Q6ZN18 517 aaPredicted RBP31.56■■■□□ 2.64
UPF3A-208ENST00000484246 UNC13AQ9UPW8 1703 aa31.41■■■□□ 2.62
UPF3A-208ENST00000484246 BICRAQ9NZM4 1560 aa31.31■■■□□ 2.6
UPF3A-208ENST00000484246 SCRIBQ14160 1630 aa31.25■■■□□ 2.59
UPF3A-208ENST00000484246 PABPN1Q86U42 306 aaKnown RBP eCLIP31.2■■■□□ 2.59
UPF3A-208ENST00000484246 SHROOM4Q9ULL8 1493 aa31.15■■■□□ 2.58
UPF3A-208ENST00000484246 DNAJC5BQ9UF47 199 aa30.84■■■□□ 2.53
UPF3A-208ENST00000484246 CHIC1Q5VXU3 224 aa30.69■■■□□ 2.5
UPF3A-208ENST00000484246 EIF4G1Q04637 1599 aaKnown RBP30.47■■■□□ 2.47
UPF3A-208ENST00000484246 CC2D2AQ9P2K1 1620 aa30.28■■■□□ 2.44
UPF3A-208ENST00000484246 CECR2Q9BXF3 1484 aa30.09■■■□□ 2.41
UPF3A-208ENST00000484246 BAZ1AQ9NRL2 1556 aaPredicted RBP29.98■■■□□ 2.39
UPF3A-208ENST00000484246 SMARCA4P51532 1647 aa29.97■■■□□ 2.39
UPF3A-208ENST00000484246 NCAPD3P42695 1498 aa29.84■■■□□ 2.37
UPF3A-208ENST00000484246 ATAD2BQ9ULI0 1458 aa29.83■■■□□ 2.37
UPF3A-208ENST00000484246 SMARCA2P51531 1590 aa29.8■■■□□ 2.36
UPF3A-208ENST00000484246 MROH2BQ7Z745 1585 aa29.77■■■□□ 2.36
UPF3A-208ENST00000484246 PEG3Q9GZU2 1588 aa29.77■■■□□ 2.36
UPF3A-208ENST00000484246 HMGXB3Q12766 1538 aa29.71■■■□□ 2.35
UPF3A-208ENST00000484246 BAZ1BQ9UIG0 1483 aaKnown RBP29.55■■■□□ 2.32
UPF3A-208ENST00000484246 RSF1Q96T23 1441 aaPredicted RBP29.49■■■□□ 2.31
UPF3A-208ENST00000484246 WIZO95785 1651 aa29.38■■■□□ 2.29
UPF3A-208ENST00000484246 TOP2AP11388 1531 aaKnown RBP29.2■■■□□ 2.26
UPF3A-208ENST00000484246 LAMC3Q9Y6N6 1575 aa29■■■□□ 2.23
UPF3A-208ENST00000484246 NESP48681 1621 aa28.96■■■□□ 2.23
UPF3A-208ENST00000484246 CADPSQ9ULU8 1353 aa28.93■■■□□ 2.22
UPF3A-208ENST00000484246 ERCC6Q03468 1493 aa28.83■■■□□ 2.21
UPF3A-208ENST00000484246 CFTRP13569 1480 aa28.8■■■□□ 2.2
UPF3A-208ENST00000484246 CCDC88BA6NC98 1476 aa28.79■■■□□ 2.2
UPF3A-208ENST00000484246 PDS5BQ9NTI5 1447 aa28.79■■■□□ 2.2
UPF3A-208ENST00000484246 DNAJC5Q9H3Z4 198 aa28.62■■■□□ 2.17
UPF3A-208ENST00000484246 CUX2O14529 1486 aa28.61■■■□□ 2.17
UPF3A-208ENST00000484246 SUPT5HO00267 1087 aaKnown RBP28.59■■■□□ 2.17
UPF3A-208ENST00000484246 THOC2Q8NI27 1593 aaKnown RBP28.58■■■□□ 2.17
UPF3A-208ENST00000484246 KIF21AQ7Z4S6 1674 aa28.58■■■□□ 2.17
UPF3A-208ENST00000484246 FANCD2Q9BXW9 1451 aa28.57■■■□□ 2.16
UPF3A-208ENST00000484246 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
UPF3A-208ENST00000484246 MRC2Q9UBG0 1479 aa28.5■■■□□ 2.15
UPF3A-208ENST00000484246 PRDM2Q13029 1718 aa28.46■■■□□ 2.15
UPF3A-208ENST00000484246 WDR62O43379 1518 aa28.43■■■□□ 2.14
UPF3A-208ENST00000484246 URB2Q14146 1524 aaKnown RBP28.28■■■□□ 2.12
UPF3A-208ENST00000484246 ABCC8Q09428 1581 aa28.17■■■□□ 2.1
UPF3A-208ENST00000484246 TOPBP1Q92547 1522 aa28.13■■■□□ 2.09
UPF3A-208ENST00000484246 DNMBPQ6XZF7 1577 aa28.11■■■□□ 2.09
UPF3A-208ENST00000484246 IFT140Q96RY7 1462 aa27.96■■■□□ 2.07
UPF3A-208ENST00000484246 CUX1P39880 1505 aa27.94■■■□□ 2.06
UPF3A-208ENST00000484246 POLA1P09884 1462 aaPredicted RBP27.9■■■□□ 2.06
UPF3A-208ENST00000484246 FGD5Q6ZNL6 1462 aa27.83■■■□□ 2.04
UPF3A-208ENST00000484246 TARBP1Q13395 1621 aaKnown RBP27.81■■■□□ 2.04
UPF3A-208ENST00000484246 WRNQ14191 1432 aaPredicted RBP eCLIP27.79■■■□□ 2.04
UPF3A-208ENST00000484246 ZNF608Q9ULD9 1512 aaPredicted RBP27.77■■■□□ 2.04
UPF3A-208ENST00000484246 SOGA1O94964 1423 aa27.75■■■□□ 2.03
UPF3A-208ENST00000484246 TOP2BQ02880 1626 aa27.73■■■□□ 2.03
UPF3A-208ENST00000484246 RAD54L2Q9Y4B4 1467 aa27.71■■■□□ 2.03
UPF3A-208ENST00000484246 BIVM-ERCC5R4GMW8 1640 aa27.71■■■□□ 2.03
UPF3A-208ENST00000484246 WDR97A6NE52 1622 aa27.7■■■□□ 2.02
UPF3A-208ENST00000484246 SYNJ1O43426 1573 aa27.69■■■□□ 2.02
UPF3A-208ENST00000484246 EIF4G3O43432 1585 aaKnown RBP27.67■■■□□ 2.02
UPF3A-208ENST00000484246 ABCA10Q8WWZ4 1543 aa27.62■■■□□ 2.01
UPF3A-208ENST00000484246 AQRO60306 1485 aaKnown RBP eCLIP27.58■■■□□ 2.01
UPF3A-208ENST00000484246 TDRD9Q8NDG6 1382 aaKnown RBP27.55■■■□□ 2
UPF3A-208ENST00000484246 ABCA5Q8WWZ7 1642 aa27.47■■□□□ 1.99
UPF3A-208ENST00000484246 GRIN2BQ13224 1484 aa27.46■■□□□ 1.99
UPF3A-208ENST00000484246 GAPVD1Q14C86 1478 aa27.45■■□□□ 1.99
UPF3A-208ENST00000484246 MAGI1Q96QZ7 1491 aaPredicted RBP27.41■■□□□ 1.98
UPF3A-208ENST00000484246 SNAPC4Q5SXM2 1469 aa27.38■■□□□ 1.97
UPF3A-208ENST00000484246 TRIM41Q8WV44 630 aa27.36■■□□□ 1.97
UPF3A-208ENST00000484246 OSCARQ8IYS5 282 aa27.33■■□□□ 1.97
UPF3A-208ENST00000484246 PBRM1Q86U86 1689 aa27.31■■□□□ 1.96
UPF3A-208ENST00000484246 ERICH3Q5RHP9 1530 aa27.28■■□□□ 1.96
UPF3A-208ENST00000484246 SYNJ2O15056 1496 aa27.28■■□□□ 1.96
UPF3A-208ENST00000484246 KIF27Q86VH2 1401 aa27.22■■□□□ 1.95
UPF3A-208ENST00000484246 CHD1O14646 1710 aa27.21■■□□□ 1.95
UPF3A-208ENST00000484246 ADAMTS12P58397 1594 aa27.21■■□□□ 1.95
UPF3A-208ENST00000484246 FHAD1B1AJZ9 1412 aa27.17■■□□□ 1.94
UPF3A-208ENST00000484246 CHMP7Q8WUX9 453 aaPredicted RBP27.15■■□□□ 1.94
UPF3A-208ENST00000484246 FBLN2P98095 1184 aa27.13■■□□□ 1.93
UPF3A-208ENST00000484246 GRIN2AQ12879 1464 aa27.11■■□□□ 1.93
UPF3A-208ENST00000484246 IGF1RP08069 1367 aa27.09■■□□□ 1.93
UPF3A-208ENST00000484246 CLASP1Q7Z460 1538 aa27.08■■□□□ 1.93
UPF3A-208ENST00000484246 PHF23Q9BUL5 403 aaPredicted RBP27.04■■□□□ 1.92
UPF3A-208ENST00000484246 NUP160Q12769 1436 aa27.04■■□□□ 1.92
UPF3A-208ENST00000484246 CUL7Q14999 1698 aa27.01■■□□□ 1.91
UPF3A-208ENST00000484246 ARHGEF11O15085 1522 aa26.94■■□□□ 1.9
UPF3A-208ENST00000484246 CEP170Q5SW79 1584 aa26.93■■□□□ 1.9
UPF3A-208ENST00000484246 CARMIL1Q5VZK9 1371 aa26.91■■□□□ 1.9
UPF3A-208ENST00000484246 RUSC2Q8N2Y8 1516 aa26.9■■□□□ 1.9
UPF3A-208ENST00000484246 RIMBP3CA6NJZ7 1639 aa26.87■■□□□ 1.89
UPF3A-208ENST00000484246 RIMBP3BA6NNM3 1639 aa26.87■■□□□ 1.89
UPF3A-208ENST00000484246 RIMBP3Q9UFD9 1639 aa26.87■■□□□ 1.89
UPF3A-208ENST00000484246 EEA1Q15075 1411 aa26.8■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms