RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MRPL23Q16540 153 aaKnown RBP9.95□□□□□ -0.82
USP40-214ENST00000483519 Q1RN00 199 aa9.95□□□□□ -0.82
USP40-214ENST00000483519 TRBV6-5A0A0K0K1A5 114 aa9.95□□□□□ -0.82
USP40-214ENST00000483519 TMEM223A0PJW6 202 aa9.95□□□□□ -0.82
USP40-214ENST00000483519 H7C2G1 150 aa9.95□□□□□ -0.82
USP40-214ENST00000483519 UNQ9165/PRO28630Q6UXU0 137 aa9.95□□□□□ -0.82
USP40-214ENST00000483519 NRGNQ92686 78 aa9.95□□□□□ -0.82
USP40-214ENST00000483519 F6UB75 175 aa9.94□□□□□ -0.82
USP40-214ENST00000483519 SEC61GP60059 68 aa9.94□□□□□ -0.82
USP40-214ENST00000483519 DOPEY1Q5JWR5 2465 aa9.94□□□□□ -0.82
USP40-214ENST00000483519 DEFB104AQ8WTQ1 72 aa9.94□□□□□ -0.82
USP40-214ENST00000483519 NTN5Q8WTR8 489 aaPredicted RBP9.94□□□□□ -0.82
USP40-214ENST00000483519 A0A087WWL8 130 aa9.94□□□□□ -0.82
USP40-214ENST00000483519 NDUFV3P56181 108 aaKnown RBP9.94□□□□□ -0.82
USP40-214ENST00000483519 CDSNQ15517 529 aa9.94□□□□□ -0.82
USP40-214ENST00000483519 LINC01620Q4KN68 170 aa9.94□□□□□ -0.82
USP40-214ENST00000483519 ANKHD1Q8IWZ3 2542 aaKnown RBP9.94□□□□□ -0.82
USP40-214ENST00000483519 UBR5O95071 2799 aaPredicted RBP9.94□□□□□ -0.82
USP40-214ENST00000483519 CSMD1Q96PZ7 3565 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 LGALS9O00182 355 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 RHOHQ15669 191 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 NSUN5P1Q3KNT7 163 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 C5orf47Q569G3 176 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 MUSTN1Q8IVN3 82 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 Q8N1Y9 231 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 LINC01600Q96MT4 127 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 ABCA4P78363 2273 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 A0A0J9YX75 114 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 B5MCH6 92 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 EIF4EBP3O60516 100 aaPredicted RBP9.93□□□□□ -0.82
USP40-214ENST00000483519 NHLRC4P0CG21 123 aaPredicted RBP9.93□□□□□ -0.82
USP40-214ENST00000483519 RPL13AP40429 203 aaKnown RBP9.93□□□□□ -0.82
USP40-214ENST00000483519 TTC32Q5I0X7 151 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 Q6Q795 121 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 JPT2Q9H910 190 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 MUC4Q99102 2169 aa9.93□□□□□ -0.82
USP40-214ENST00000483519 KLLNB2CW77 178 aa9.92□□□□□ -0.82
USP40-214ENST00000483519 MOB4Q9Y3A3 225 aa9.92□□□□□ -0.82
USP40-214ENST00000483519 FASNP49327 2511 aaKnown RBP9.92□□□□□ -0.82
USP40-214ENST00000483519 HELZ2Q9BYK8 2649 aaKnown RBP9.92□□□□□ -0.82
USP40-214ENST00000483519 TRAV8-4A0A0B4J246 113 aa9.92□□□□□ -0.82
USP40-214ENST00000483519 IFITM1P13164 125 aa9.92□□□□□ -0.82
USP40-214ENST00000483519 C19orf54Q5BKX5 351 aa9.92□□□□□ -0.82
USP40-214ENST00000483519 ZNF256Q9Y2P7 627 aaPredicted RBP9.92□□□□□ -0.82
USP40-214ENST00000483519 TRAV4A0A0B4J268 109 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 TRBV10-2A0A0K0K1G8 114 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 M0R2P5 195 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 TRBV30A0A0K0K1B3 111 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 ZNF561-AS1K7EIQ3 104 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 NPFFO15130 113 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 MDFICQ9P1T7 246 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 USP9XQ93008 2570 aaPredicted RBP9.91□□□□□ -0.82
USP40-214ENST00000483519 GAGE12JA6NER3 117 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 GAGE7O76087 117 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 TRBV12-3P01733 135 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 IGHV4-39P01824 125 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 GAGE12FP0CL80 117 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 GAGE12GP0CL81 117 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 GAGE12IP0CL82 117 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 ZNF22P17026 224 aaPredicted RBP9.91□□□□□ -0.82
USP40-214ENST00000483519 GAGE4Q13068 117 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 FAM74A4Q5TZK3 123 aa9.91□□□□□ -0.82
USP40-214ENST00000483519 IGKV3-7A0A075B6H7 116 aa9.9□□□□□ -0.82
USP40-214ENST00000483519 H3BMM0 161 aa9.9□□□□□ -0.82
USP40-214ENST00000483519 ZNF56Q15929 161 aa9.9□□□□□ -0.82
USP40-214ENST00000483519 UBE2WQ96B02 151 aa9.9□□□□□ -0.82
USP40-214ENST00000483519 LINC00527Q9UJ94 153 aa9.9□□□□□ -0.82
USP40-214ENST00000483519 EDN2P20800 178 aa9.9□□□□□ -0.83
USP40-214ENST00000483519 TMEM219Q86XT9 240 aa9.9□□□□□ -0.83
USP40-214ENST00000483519 LRRK2Q5S007 2527 aa9.89□□□□□ -0.83
USP40-214ENST00000483519 IGHV3-64A0A075B6Q5 118 aa9.89□□□□□ -0.83
USP40-214ENST00000483519 CRLF1O75462 422 aa9.89□□□□□ -0.83
USP40-214ENST00000483519 A0A0J9YXY3 114 aa9.89□□□□□ -0.83
USP40-214ENST00000483519 TEX49A0A1B0GTD5 131 aa9.89□□□□□ -0.83
USP40-214ENST00000483519 ELANEP08246 267 aa9.89□□□□□ -0.83
USP40-214ENST00000483519 USMG5Q96IX5 58 aa9.89□□□□□ -0.83
USP40-214ENST00000483519 OPRPNQ99935 248 aaPredicted RBP9.89□□□□□ -0.83
USP40-214ENST00000483519 RHPN1-AS1Q9BWJ2 59 aa9.89□□□□□ -0.83
USP40-214ENST00000483519 SPANXA1Q9NS26 97 aa9.89□□□□□ -0.83
USP40-214ENST00000483519 C19orf84I3L1E1 186 aa9.88□□□□□ -0.83
USP40-214ENST00000483519 M0QY20 66 aa9.88□□□□□ -0.83
USP40-214ENST00000483519 BEX4Q9NWD9 120 aaPredicted RBP9.88□□□□□ -0.83
USP40-214ENST00000483519 TRIAP1O43715 76 aa9.88□□□□□ -0.83
USP40-214ENST00000483519 C20orf203Q8NBC4 194 aa9.88□□□□□ -0.83
USP40-214ENST00000483519 ODF3Q96PU9 254 aa9.88□□□□□ -0.83
USP40-214ENST00000483519 FLNCQ14315 2725 aa9.88□□□□□ -0.83
USP40-214ENST00000483519 DCHS2Q6V1P9 2916 aa9.88□□□□□ -0.83
USP40-214ENST00000483519 TRAV12-3A0A0B4J271 114 aa9.87□□□□□ -0.83
USP40-214ENST00000483519 C15orf53Q8NAA6 179 aa9.87□□□□□ -0.83
USP40-214ENST00000483519 LRBAP50851 2863 aa9.87□□□□□ -0.83
USP40-214ENST00000483519 H3BUA1 57 aa9.87□□□□□ -0.83
USP40-214ENST00000483519 C2orf82Q6UX34 121 aa9.87□□□□□ -0.83
USP40-214ENST00000483519 LRRC75A-AS1Q8N1F1 130 aa9.87□□□□□ -0.83
USP40-214ENST00000483519 C9orf85Q96MD7 179 aa9.87□□□□□ -0.83
USP40-214ENST00000483519 DOPEY2Q9Y3R5 2298 aa9.87□□□□□ -0.83
USP40-214ENST00000483519 A0A0J9YXV3 536 aa9.86□□□□□ -0.83
USP40-214ENST00000483519 I3L3M4 83 aa9.86□□□□□ -0.83
USP40-214ENST00000483519 COX6CP09669 75 aa9.86□□□□□ -0.83
USP40-214ENST00000483519 IGLV4-3A0A075B6K6 122 aa9.86□□□□□ -0.83
USP40-214ENST00000483519 H3BT86 120 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms