RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 ADIRFQ15847 76 aa13.57□□□□□ -0.24
COL9A3-202ENST00000452372 OR10J3Q5JRS4 329 aa13.57□□□□□ -0.24
COL9A3-202ENST00000452372 GFRA4Q9GZZ7 299 aa13.57□□□□□ -0.24
COL9A3-202ENST00000452372 V9GYV3 84 aa13.57□□□□□ -0.24
COL9A3-202ENST00000452372 TRAV9-2A0A087WT02 112 aa13.56□□□□□ -0.24
COL9A3-202ENST00000452372 K7EP13 123 aa13.56□□□□□ -0.24
COL9A3-202ENST00000452372 UBE2D3P61077 147 aa13.56□□□□□ -0.24
COL9A3-202ENST00000452372 UBE2D2P62837 147 aa13.56□□□□□ -0.24
COL9A3-202ENST00000452372 NEXN-AS1Q8NBZ9 246 aa13.56□□□□□ -0.24
COL9A3-202ENST00000452372 PGLYRP4Q96LB8 373 aa13.56□□□□□ -0.24
COL9A3-202ENST00000452372 DPH3P1Q9H4G8 78 aa13.56□□□□□ -0.24
COL9A3-202ENST00000452372 A0A087WWC5 75 aa13.55□□□□□ -0.24
COL9A3-202ENST00000452372 IGHV3-38A0A0C4DH36 116 aa13.55□□□□□ -0.24
COL9A3-202ENST00000452372 MGPP08493 103 aa13.55□□□□□ -0.24
COL9A3-202ENST00000452372 HSPG2P98160 4391 aa13.54□□□□□ -0.24
COL9A3-202ENST00000452372 HIGD1CA8MV81 97 aa13.54□□□□□ -0.24
COL9A3-202ENST00000452372 M0QY20 66 aa13.54□□□□□ -0.24
COL9A3-202ENST00000452372 H7C1H1 209 aa13.53□□□□□ -0.24
COL9A3-202ENST00000452372 LINC01556Q5JQF7 62 aa13.53□□□□□ -0.24
COL9A3-202ENST00000452372 SUMO4Q6EEV6 95 aa13.53□□□□□ -0.24
COL9A3-202ENST00000452372 LRP1BQ9NZR2 4599 aa13.53□□□□□ -0.24
COL9A3-202ENST00000452372 ABCA13Q86UQ4 5058 aa13.52□□□□□ -0.24
COL9A3-202ENST00000452372 SMIM15Q7Z3B0 74 aa13.52□□□□□ -0.25
COL9A3-202ENST00000452372 BORCS7Q96B45 105 aa13.52□□□□□ -0.25
COL9A3-202ENST00000452372 DNAJC30Q96LL9 226 aa13.52□□□□□ -0.25
COL9A3-202ENST00000452372 A0A1B0GUT8 65 aa13.51□□□□□ -0.25
COL9A3-202ENST00000452372 C10orf126Q8N4M7 172 aa13.5□□□□□ -0.25
COL9A3-202ENST00000452372 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.5□□□□□ -0.25
COL9A3-202ENST00000452372 RASL11AQ6T310 242 aa13.49□□□□□ -0.25
COL9A3-202ENST00000452372 DAZ4Q86SG3 579 aaKnown RBP13.49□□□□□ -0.25
COL9A3-202ENST00000452372 NUP35Q8NFH5 326 aa13.49□□□□□ -0.25
COL9A3-202ENST00000452372 DAZ3Q9NR90 486 aaKnown RBP13.49□□□□□ -0.25
COL9A3-202ENST00000452372 NAT8BQ9UHF3 227 aa13.49□□□□□ -0.25
COL9A3-202ENST00000452372 TNFRSF18Q9Y5U5 241 aa13.49□□□□□ -0.25
COL9A3-202ENST00000452372 TNP2Q05952 138 aa13.48□□□□□ -0.25
COL9A3-202ENST00000452372 NIT2Q9NQR4 276 aa13.48□□□□□ -0.25
COL9A3-202ENST00000452372 SMIM27A0A1W2PRY6 76 aa13.47□□□□□ -0.25
COL9A3-202ENST00000452372 UQCC3Q6UW78 93 aa13.47□□□□□ -0.25
COL9A3-202ENST00000452372 TRBV6-8A0A0A6YYG3 113 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 IGHV3-30P01768 117 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 IGHV3-33P01772 117 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 IGHV3-30-3P0DP02 117 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 IGHV3-30-5P0DP03 117 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 PNRC1Q12796 327 aaPredicted RBP13.46□□□□□ -0.25
COL9A3-202ENST00000452372 RIGQ13278 110 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 NFE4Q86UQ8 179 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 GATD1Q8NB37 220 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 FRZBQ92765 325 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 TMEM191AQ9H0A3 160 aa13.46□□□□□ -0.25
COL9A3-202ENST00000452372 IBA57-AS1B1ANH7 110 aa13.45□□□□□ -0.26
COL9A3-202ENST00000452372 TMEM97Q5BJF2 176 aa13.45□□□□□ -0.26
COL9A3-202ENST00000452372 Q6ZRN7 208 aaPredicted RBP13.45□□□□□ -0.26
COL9A3-202ENST00000452372 NIT1Q86X76 327 aa13.45□□□□□ -0.26
COL9A3-202ENST00000452372 KRTAP4-5Q9BYR2 181 aa13.45□□□□□ -0.26
COL9A3-202ENST00000452372 TRAV26-2A0A0B4J265 109 aa13.44□□□□□ -0.26
COL9A3-202ENST00000452372 PPP1R2P9O14990 202 aa13.43□□□□□ -0.26
COL9A3-202ENST00000452372 Q8N3U1 123 aa13.43□□□□□ -0.26
COL9A3-202ENST00000452372 NTM-AS1Q6ZSK4 140 aa13.42□□□□□ -0.26
COL9A3-202ENST00000452372 URGCP-MRPS24S4R325 110 aa13.42□□□□□ -0.26
COL9A3-202ENST00000452372 APOBP04114 4563 aaKnown RBP13.41□□□□□ -0.26
COL9A3-202ENST00000452372 TMEM218A2RU14 115 aa13.41□□□□□ -0.26
COL9A3-202ENST00000452372 CHCHD7Q9BUK0 85 aa13.41□□□□□ -0.26
COL9A3-202ENST00000452372 MT-ND4LP03901 98 aa13.4□□□□□ -0.26
COL9A3-202ENST00000452372 RAB4AP20338 218 aa13.4□□□□□ -0.26
COL9A3-202ENST00000452372 LAGE3Q14657 143 aa13.4□□□□□ -0.26
COL9A3-202ENST00000452372 KCNIP4Q6PIL6 250 aa13.4□□□□□ -0.26
COL9A3-202ENST00000452372 ANAPC16Q96DE5 110 aa13.4□□□□□ -0.26
COL9A3-202ENST00000452372 RPL39LQ96EH5 51 aaKnown RBP13.4□□□□□ -0.26
COL9A3-202ENST00000452372 RNF185Q96GF1 192 aa13.4□□□□□ -0.26
COL9A3-202ENST00000452372 DNAH5Q8TE73 4624 aa13.4□□□□□ -0.26
COL9A3-202ENST00000452372 A0A087WX48 190 aa13.39□□□□□ -0.27
COL9A3-202ENST00000452372 A0A1B0GW15 77 aa13.39□□□□□ -0.27
COL9A3-202ENST00000452372 LINC00862A6NCI5 91 aa13.39□□□□□ -0.27
COL9A3-202ENST00000452372 COMMD7Q86VX2 200 aa13.39□□□□□ -0.27
COL9A3-202ENST00000452372 CHCHD5Q9BSY4 110 aa13.39□□□□□ -0.27
COL9A3-202ENST00000452372 TRBV25-1A0A075B6N4 114 aa13.38□□□□□ -0.27
COL9A3-202ENST00000452372 TMEM262E9PQX1 116 aa13.38□□□□□ -0.27
COL9A3-202ENST00000452372 F8W036 122 aa13.38□□□□□ -0.27
COL9A3-202ENST00000452372 ADCYAP1P18509 176 aa13.38□□□□□ -0.27
COL9A3-202ENST00000452372 IQCJQ1A5X6 159 aa13.38□□□□□ -0.27
COL9A3-202ENST00000452372 AMN1Q8IY45 258 aa13.38□□□□□ -0.27
COL9A3-202ENST00000452372 IGHV1-24A0A0C4DH33 117 aa13.37□□□□□ -0.27
COL9A3-202ENST00000452372 TRBV6-5A0A0K0K1A5 114 aa13.37□□□□□ -0.27
COL9A3-202ENST00000452372 CAMPP49913 170 aa13.37□□□□□ -0.27
COL9A3-202ENST00000452372 PKIAP61925 76 aa13.37□□□□□ -0.27
COL9A3-202ENST00000452372 MRAP2Q96G30 205 aa13.37□□□□□ -0.27
COL9A3-202ENST00000452372 GAS8-AS1O95177 125 aa13.36□□□□□ -0.27
COL9A3-202ENST00000452372 ELOBQ15370 118 aa13.36□□□□□ -0.27
COL9A3-202ENST00000452372 SEC11CQ9BY50 192 aa13.36□□□□□ -0.27
COL9A3-202ENST00000452372 Q9HAA7 133 aa13.36□□□□□ -0.27
COL9A3-202ENST00000452372 TRAV8-3A0A0A6YYJ7 113 aa13.35□□□□□ -0.27
COL9A3-202ENST00000452372 S100A8P05109 93 aa13.35□□□□□ -0.27
COL9A3-202ENST00000452372 COTL1Q14019 142 aa13.35□□□□□ -0.27
COL9A3-202ENST00000452372 FAM104BQ5XKR9 115 aa13.35□□□□□ -0.27
COL9A3-202ENST00000452372 KLK12Q9UKR0 248 aa13.35□□□□□ -0.27
COL9A3-202ENST00000452372 A0A1B0GXF2 115 aa13.34□□□□□ -0.27
COL9A3-202ENST00000452372 SDHAF1A6NFY7 115 aa13.34□□□□□ -0.27
COL9A3-202ENST00000452372 C16orf90A8MZG2 172 aa13.34□□□□□ -0.27
COL9A3-202ENST00000452372 HBBP68871 147 aa13.34□□□□□ -0.27
COL9A3-202ENST00000452372 MPV17L2Q567V2 206 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms