RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 PMVKQ15126 192 aa13.69□□□□□ -0.22
CLK1-205ENST00000434813 RBMY1FQ15415 496 aaKnown RBP13.69□□□□□ -0.22
CLK1-205ENST00000434813 NSUN5P1Q3KNT7 163 aa13.69□□□□□ -0.22
CLK1-205ENST00000434813 ZNF876PQ49A33 203 aa13.69□□□□□ -0.22
CLK1-205ENST00000434813 NHP2Q9NX24 153 aaKnown RBP13.69□□□□□ -0.22
CLK1-205ENST00000434813 PEMTQ9UBM1 199 aa13.69□□□□□ -0.22
CLK1-205ENST00000434813 K7ERJ3 54 aa13.69□□□□□ -0.22
CLK1-205ENST00000434813 RHOHQ15669 191 aa13.69□□□□□ -0.22
CLK1-205ENST00000434813 FLNAP21333 2647 aaKnown RBP13.68□□□□□ -0.22
CLK1-205ENST00000434813 TRBV7-3A0A075B6L6 115 aa13.68□□□□□ -0.22
CLK1-205ENST00000434813 KNCNA6PVL3 124 aa13.68□□□□□ -0.22
CLK1-205ENST00000434813 FABP2P12104 132 aa13.68□□□□□ -0.22
CLK1-205ENST00000434813 DEFB131AP59861 70 aa13.68□□□□□ -0.22
CLK1-205ENST00000434813 SAMD5Q5TGI4 173 aa13.68□□□□□ -0.22
CLK1-205ENST00000434813 OR5A1Q8NGJ0 315 aa13.68□□□□□ -0.22
CLK1-205ENST00000434813 SPCS1Q9Y6A9 102 aa13.68□□□□□ -0.22
CLK1-205ENST00000434813 HIST1H4GQ99525 98 aa13.68□□□□□ -0.22
CLK1-205ENST00000434813 C11orf86A6NJI1 115 aa13.67□□□□□ -0.22
CLK1-205ENST00000434813 H3BMM0 161 aa13.67□□□□□ -0.22
CLK1-205ENST00000434813 OCIAD2Q56VL3 154 aa13.67□□□□□ -0.22
CLK1-205ENST00000434813 TMEM61Q8N0U2 210 aa13.66□□□□□ -0.22
CLK1-205ENST00000434813 TMEM86BQ8N661 226 aa13.66□□□□□ -0.22
CLK1-205ENST00000434813 DEFB104AQ8WTQ1 72 aa13.66□□□□□ -0.22
CLK1-205ENST00000434813 EDA2RQ9HAV5 297 aa13.66□□□□□ -0.22
CLK1-205ENST00000434813 YAE1D1Q9NRH1 226 aa13.66□□□□□ -0.22
CLK1-205ENST00000434813 TLN2Q9Y4G6 2542 aa13.65□□□□□ -0.22
CLK1-205ENST00000434813 RBMY1BA6NDE4 496 aaKnown RBP13.65□□□□□ -0.22
CLK1-205ENST00000434813 RBMY1EA6NEQ0 496 aaKnown RBP13.65□□□□□ -0.22
CLK1-205ENST00000434813 RBMY1DP0C7P1 496 aaKnown RBP13.65□□□□□ -0.22
CLK1-205ENST00000434813 HERVK_113P61574 105 aa13.64□□□□□ -0.23
CLK1-205ENST00000434813 SPAG8Q99932 426 aaPredicted RBP13.64□□□□□ -0.23
CLK1-205ENST00000434813 ZNF815PA8K554 130 aa13.64□□□□□ -0.23
CLK1-205ENST00000434813 C12orf74Q32Q52 190 aa13.63□□□□□ -0.23
CLK1-205ENST00000434813 KHDC1LQ5JSQ8 128 aa13.63□□□□□ -0.23
CLK1-205ENST00000434813 AKAP9Q99996 3911 aa13.63□□□□□ -0.23
CLK1-205ENST00000434813 A0A1B0GWB2 263 aa13.63□□□□□ -0.23
CLK1-205ENST00000434813 I3L3M4 83 aa13.63□□□□□ -0.23
CLK1-205ENST00000434813 KRTAP1-1Q07627 177 aa13.63□□□□□ -0.23
CLK1-205ENST00000434813 CD300EQ496F6 205 aaPredicted RBP13.63□□□□□ -0.23
CLK1-205ENST00000434813 KLHL30-AS1Q8NEE0 82 aa13.63□□□□□ -0.23
CLK1-205ENST00000434813 DLX4Q92988 240 aaPredicted RBP13.63□□□□□ -0.23
CLK1-205ENST00000434813 DUX3Q96PT4 197 aa13.63□□□□□ -0.23
CLK1-205ENST00000434813 MAP6D1Q9H9H5 199 aa13.63□□□□□ -0.23
CLK1-205ENST00000434813 EMP1P54849 157 aa13.62□□□□□ -0.23
CLK1-205ENST00000434813 SCGB2A2Q13296 93 aa13.62□□□□□ -0.23
CLK1-205ENST00000434813 DYNLRB2Q8TF09 96 aa13.62□□□□□ -0.23
CLK1-205ENST00000434813 CYSRT1A8MQ03 144 aa13.61□□□□□ -0.23
CLK1-205ENST00000434813 P0DMU3 169 aa13.61□□□□□ -0.23
CLK1-205ENST00000434813 FAM231AP0DMU4 169 aa13.61□□□□□ -0.23
CLK1-205ENST00000434813 FAM231CP0DMU5 169 aa13.61□□□□□ -0.23
CLK1-205ENST00000434813 PIK3CD-AS1Q5SR53 167 aa13.61□□□□□ -0.23
CLK1-205ENST00000434813 C20orf203Q8NBC4 194 aa13.61□□□□□ -0.23
CLK1-205ENST00000434813 DNAJC9-AS1A6NH13 148 aa13.61□□□□□ -0.23
CLK1-205ENST00000434813 IGLL5B9A064 214 aa13.61□□□□□ -0.23
CLK1-205ENST00000434813 MYO9AB2RTY4 2548 aa13.6□□□□□ -0.23
CLK1-205ENST00000434813 K7ERU9 68 aa13.6□□□□□ -0.23
CLK1-205ENST00000434813 ZNRF2Q8NHG8 242 aa13.6□□□□□ -0.23
CLK1-205ENST00000434813 M0R2P5 195 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 HTN1P15515 57 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 ZNF415Q09FC8 603 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 DEFB114Q30KQ6 69 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 SCGB1D4Q6XE38 83 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 Q6ZSV7 163 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 NFE4Q86UQ8 179 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 PLEKHB2Q96CS7 222 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 A8MWV9 139 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 PTH2Q96A98 100 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 ZNF479Q96JC4 524 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 LINC00467Q9BRT7 94 aa13.59□□□□□ -0.23
CLK1-205ENST00000434813 SORL1Q92673 2214 aa13.58□□□□□ -0.23
CLK1-205ENST00000434813 SONP18583 2426 aaKnown RBP13.58□□□□□ -0.24
CLK1-205ENST00000434813 RNF151Q2KHN1 245 aa13.57□□□□□ -0.24
CLK1-205ENST00000434813 TMEM170BQ5T4T1 132 aa13.57□□□□□ -0.24
CLK1-205ENST00000434813 RAX2Q96IS3 184 aa13.57□□□□□ -0.24
CLK1-205ENST00000434813 RRN3P1Q2M238 152 aa13.56□□□□□ -0.24
CLK1-205ENST00000434813 OPRPNQ99935 248 aaPredicted RBP13.56□□□□□ -0.24
CLK1-205ENST00000434813 TMEM238LA0A1B0GVL6 79 aa13.56□□□□□ -0.24
CLK1-205ENST00000434813 A6NJY4 79 aa13.56□□□□□ -0.24
CLK1-205ENST00000434813 TSPEAR-AS2P59090 65 aa13.56□□□□□ -0.24
CLK1-205ENST00000434813 IGHV3-73A0A0B4J1V6 119 aa13.55□□□□□ -0.24
CLK1-205ENST00000434813 INSP01308 110 aa13.55□□□□□ -0.24
CLK1-205ENST00000434813 C11orf72Q8NBR9 251 aa13.55□□□□□ -0.24
CLK1-205ENST00000434813 CLUHP3Q96NS8 147 aa13.55□□□□□ -0.24
CLK1-205ENST00000434813 OTOGQ6ZRI0 2925 aa13.54□□□□□ -0.24
CLK1-205ENST00000434813 IGLV4-3A0A075B6K6 122 aa13.54□□□□□ -0.24
CLK1-205ENST00000434813 A0A0J9YY99 117 aa13.54□□□□□ -0.24
CLK1-205ENST00000434813 ESM1Q9NQ30 184 aa13.54□□□□□ -0.24
CLK1-205ENST00000434813 FHL3Q13643 280 aa13.54□□□□□ -0.24
CLK1-205ENST00000434813 SPANXB1Q9NS25 103 aaPredicted RBP13.54□□□□□ -0.24
CLK1-205ENST00000434813 PYGO1Q9Y3Y4 419 aa13.54□□□□□ -0.24
CLK1-205ENST00000434813 TRAV25A0A0B4J276 109 aa13.53□□□□□ -0.24
CLK1-205ENST00000434813 SAP30O75446 220 aa13.53□□□□□ -0.24
CLK1-205ENST00000434813 PRM2P04554 102 aa13.53□□□□□ -0.24
CLK1-205ENST00000434813 PROK1P58294 105 aa13.53□□□□□ -0.24
CLK1-205ENST00000434813 SRSF9Q13242 221 aaKnown RBP eCLIP13.53□□□□□ -0.24
CLK1-205ENST00000434813 HIST2H2BDQ6DRA6 164 aa13.53□□□□□ -0.24
CLK1-205ENST00000434813 AMELXQ99217 191 aa13.53□□□□□ -0.24
CLK1-205ENST00000434813 ACANP16112 2415 aa13.53□□□□□ -0.24
CLK1-205ENST00000434813 TMEM223A0PJW6 202 aa13.52□□□□□ -0.24
CLK1-205ENST00000434813 J3QQQ9 107 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms