RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TNRC6AQ8NDV7 1962 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-203ENST00000396595 K7EMT4 169 aa7.9□□□□□ -1.15
LIMCH1-203ENST00000396595 RPL39P62891 51 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-203ENST00000396595 SERTAD4-AS1Q5TG53 156 aa7.9□□□□□ -1.15
LIMCH1-203ENST00000396595 Q6ZQT7 251 aa7.9□□□□□ -1.15
LIMCH1-203ENST00000396595 USP17L23D6RBM5 183 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 SPATA12Q7Z6I5 190 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 IGKV2D-24A0A075B6R9 120 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 ODF3L1Q8IXM7 274 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 COX7A2LO14548 114 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 IGKV4-1P06312 121 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 FRMD6-AS1P0C7T7 363 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 GRNP28799 593 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 PTPRQQ9UMZ3 2332 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 ETDCA0A1B0GVM5 59 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 DEFB136Q30KP8 78 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 APRG1Q8IVJ8 170 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 C5orf56Q8N8D9 126 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 MRPL36Q9P0J6 103 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 CSDC2Q9Y534 153 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 SERP1Q9Y6X1 66 aa7.89□□□□□ -1.15
LIMCH1-203ENST00000396595 DENND4CQ5VZ89 1909 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 TEX49A0A1B0GTD5 131 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 MRPS36P82909 103 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 IGHV4-61A0A0C4DH41 118 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 C2orf70A6NJV1 201 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 WT1P19544 449 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 SLURP1P55000 103 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 NDUFA11Q86Y39 141 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 BLCAPP62952 87 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 ENHOQ6UWT2 76 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 IMUPQ9GZP8 106 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 A0A1B0GXF2 115 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 P0C879 139 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 GYPEP15421 78 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 NCKAP5O14513 1909 aa7.88□□□□□ -1.15
LIMCH1-203ENST00000396595 RPL18AQ02543 176 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 CASC2Q6XLA1 102 aa7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 ZNF503Q96F45 646 aa7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 TANC1Q9C0D5 1861 aa7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 BPY2O14599 106 aa7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 CAMK2N2Q96S95 79 aa7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 IGHV4-38-2P0DP08 117 aa7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 SNURFQ9Y675 71 aa7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 TRBV7-3A0A075B6L6 115 aa7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 IGF2-ASQ6U949 168 aa7.87□□□□□ -1.15
LIMCH1-203ENST00000396595 IGHV4OR15-8A0A075B7B6 117 aa7.86□□□□□ -1.15
LIMCH1-203ENST00000396595 A0A087WW49 117 aa7.86□□□□□ -1.15
LIMCH1-203ENST00000396595 NUP210Q8TEM1 1887 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-203ENST00000396595 E7EUB6 86 aa7.86□□□□□ -1.15
LIMCH1-203ENST00000396595 CGB3P0DN86 165 aa7.86□□□□□ -1.15
LIMCH1-203ENST00000396595 TNCP24821 2201 aa7.86□□□□□ -1.15
LIMCH1-203ENST00000396595 GPHB5Q86YW7 130 aa7.86□□□□□ -1.15
LIMCH1-203ENST00000396595 FAM208BQ5VWN6 2430 aa7.86□□□□□ -1.15
LIMCH1-203ENST00000396595 IGHV1-58A0A0C4DH39 117 aa7.85□□□□□ -1.15
LIMCH1-203ENST00000396595 FAM19A5Q7Z5A7 132 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-203ENST00000396595 TMEM89A2RUT3 159 aa7.85□□□□□ -1.15
LIMCH1-203ENST00000396595 C20orf203Q8NBC4 194 aa7.85□□□□□ -1.15
LIMCH1-203ENST00000396595 Q9HAA7 133 aa7.85□□□□□ -1.15
LIMCH1-203ENST00000396595 IGKV2D-26A0A0A0MRZ7 120 aa7.85□□□□□ -1.15
LIMCH1-203ENST00000396595 TRBV27A0A0K0K1C4 114 aa7.85□□□□□ -1.15
LIMCH1-203ENST00000396595 DAND5Q8N907 189 aa7.85□□□□□ -1.15
LIMCH1-203ENST00000396595 FRMPD3Q5JV73 1810 aa7.85□□□□□ -1.15
LIMCH1-203ENST00000396595 PLXNB3Q9ULL4 1909 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 SPART-AS1P0CW21 52 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 IGKV1D-37A0A075B6S9 117 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 H0Y9J4 135 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 CGB7P0DN87 165 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 OXLD1Q5BKU9 147 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 C9orf66Q5T8R8 295 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 Q8N7P7 452 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 IGHV4-30-2A0A087WSY4 118 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 IGLV2-8P01709 118 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 IGLV10-54A0A075B6I4 117 aa7.84□□□□□ -1.15
LIMCH1-203ENST00000396595 NCOA6Q14686 2063 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-203ENST00000396595 NCR3O14931 201 aa7.83□□□□□ -1.16
LIMCH1-203ENST00000396595 NDUFA1O15239 70 aa7.83□□□□□ -1.16
LIMCH1-203ENST00000396595 PRO0628Q9UI54 55 aa7.82□□□□□ -1.16
LIMCH1-203ENST00000396595 IGHV3-30-3P0DP02 117 aa7.82□□□□□ -1.16
LIMCH1-203ENST00000396595 SEM1Q6ZVN7 128 aa7.82□□□□□ -1.16
LIMCH1-203ENST00000396595 FREM1Q5H8C1 2179 aa7.82□□□□□ -1.16
LIMCH1-203ENST00000396595 PIK3CD-AS1Q5SR53 167 aa7.82□□□□□ -1.16
LIMCH1-203ENST00000396595 ZMAT4Q9H898 229 aa7.82□□□□□ -1.16
LIMCH1-203ENST00000396595 TRBV10-1A0A0K0K1A3 114 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 J3QKU1 62 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 MIR7-3HGQ8N6C7 128 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 ARHGAP21Q5T5U3 1957 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 A0A0J9YX75 114 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 WNK1Q9H4A3 2382 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 LINC00574Q9H8X3 128 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 MIAQ16674 131 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 DEFB113Q30KQ7 82 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 MSMPQ1L6U9 139 aa7.81□□□□□ -1.16
LIMCH1-203ENST00000396595 XGP55808 180 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 LINC00322Q6ZN03 302 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 DIRC1Q969H9 104 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 SIRPDQ9H106 197 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 MDFICQ9P1T7 246 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 HHLA3Q9XRX5 114 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 ACACBO00763 2458 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms