RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 H7C1H1 209 aa14.75□□□□□ -0.05
CLN3-207ENST00000395653 PGLYRP4Q96LB8 373 aa14.75□□□□□ -0.05
CLN3-207ENST00000395653 LINC01556Q5JQF7 62 aa14.75□□□□□ -0.05
CLN3-207ENST00000395653 SUMO4Q6EEV6 95 aa14.75□□□□□ -0.05
CLN3-207ENST00000395653 HECTD4Q9Y4D8 3996 aa14.74□□□□□ -0.05
CLN3-207ENST00000395653 HIGD1CA8MV81 97 aa14.74□□□□□ -0.05
CLN3-207ENST00000395653 M0QY20 66 aa14.74□□□□□ -0.05
CLN3-207ENST00000395653 C10orf126Q8N4M7 172 aa14.74□□□□□ -0.05
CLN3-207ENST00000395653 BORCS7Q96B45 105 aa14.74□□□□□ -0.05
CLN3-207ENST00000395653 SMIM15Q7Z3B0 74 aa14.73□□□□□ -0.05
CLN3-207ENST00000395653 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.72□□□□□ -0.05
CLN3-207ENST00000395653 DNAJC30Q96LL9 226 aa14.72□□□□□ -0.05
CLN3-207ENST00000395653 A0A1B0GUT8 65 aa14.71□□□□□ -0.05
CLN3-207ENST00000395653 A0A1B0GVY2 172 aa14.71□□□□□ -0.05
CLN3-207ENST00000395653 RASL11AQ6T310 242 aa14.7□□□□□ -0.06
CLN3-207ENST00000395653 DAZ4Q86SG3 579 aaKnown RBP14.7□□□□□ -0.06
CLN3-207ENST00000395653 DAZ3Q9NR90 486 aaKnown RBP14.7□□□□□ -0.06
CLN3-207ENST00000395653 BIRC6Q9NR09 4857 aa14.7□□□□□ -0.06
CLN3-207ENST00000395653 NAT8BQ9UHF3 227 aa14.69□□□□□ -0.06
CLN3-207ENST00000395653 TNFRSF18Q9Y5U5 241 aa14.69□□□□□ -0.06
CLN3-207ENST00000395653 NFE4Q86UQ8 179 aa14.68□□□□□ -0.06
CLN3-207ENST00000395653 NUP35Q8NFH5 326 aa14.68□□□□□ -0.06
CLN3-207ENST00000395653 PKD1P98161 4303 aa14.68□□□□□ -0.06
CLN3-207ENST00000395653 TNP2Q05952 138 aa14.67□□□□□ -0.06
CLN3-207ENST00000395653 TMEM97Q5BJF2 176 aa14.67□□□□□ -0.06
CLN3-207ENST00000395653 Q6ZRN7 208 aaPredicted RBP14.67□□□□□ -0.06
CLN3-207ENST00000395653 FRZBQ92765 325 aa14.67□□□□□ -0.06
CLN3-207ENST00000395653 NIT2Q9NQR4 276 aa14.67□□□□□ -0.06
CLN3-207ENST00000395653 TRBV6-8A0A0A6YYG3 113 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 SMIM27A0A1W2PRY6 76 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 IGHV3-30P01768 117 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 IGHV3-33P01772 117 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 IGHV3-30-3P0DP02 117 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 IGHV3-30-5P0DP03 117 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 PNRC1Q12796 327 aaPredicted RBP14.66□□□□□ -0.06
CLN3-207ENST00000395653 UQCC3Q6UW78 93 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 IBA57-AS1B1ANH7 110 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 NIT1Q86X76 327 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 GATD1Q8NB37 220 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 TMEM191AQ9H0A3 160 aa14.66□□□□□ -0.06
CLN3-207ENST00000395653 RIGQ13278 110 aa14.65□□□□□ -0.06
CLN3-207ENST00000395653 LAGE3Q14657 143 aa14.64□□□□□ -0.07
CLN3-207ENST00000395653 Q8N3U1 123 aa14.64□□□□□ -0.07
CLN3-207ENST00000395653 CHCHD7Q9BUK0 85 aa14.64□□□□□ -0.07
CLN3-207ENST00000395653 TRAV26-2A0A0B4J265 109 aa14.63□□□□□ -0.07
CLN3-207ENST00000395653 URGCP-MRPS24S4R325 110 aa14.63□□□□□ -0.07
CLN3-207ENST00000395653 PPP1R2P9O14990 202 aa14.62□□□□□ -0.07
CLN3-207ENST00000395653 NTM-AS1Q6ZSK4 140 aa14.62□□□□□ -0.07
CLN3-207ENST00000395653 KCNIP4Q6PIL6 250 aa14.61□□□□□ -0.07
CLN3-207ENST00000395653 DNAH11Q96DT5 4516 aa14.6□□□□□ -0.07
CLN3-207ENST00000395653 A0A087WX48 190 aa14.6□□□□□ -0.07
CLN3-207ENST00000395653 TRBV25-1A0A075B6N4 114 aa14.59□□□□□ -0.07
CLN3-207ENST00000395653 PKIAP61925 76 aa14.59□□□□□ -0.07
CLN3-207ENST00000395653 IQCJQ1A5X6 159 aa14.59□□□□□ -0.07
CLN3-207ENST00000395653 A0A1B0GW15 77 aa14.58□□□□□ -0.07
CLN3-207ENST00000395653 TMEM218A2RU14 115 aa14.58□□□□□ -0.07
CLN3-207ENST00000395653 RAB4AP20338 218 aa14.58□□□□□ -0.07
CLN3-207ENST00000395653 RPL39LQ96EH5 51 aaKnown RBP14.58□□□□□ -0.07
CLN3-207ENST00000395653 RNF185Q96GF1 192 aa14.58□□□□□ -0.07
CLN3-207ENST00000395653 CHCHD5Q9BSY4 110 aa14.58□□□□□ -0.07
CLN3-207ENST00000395653 MT-ND4LP03901 98 aa14.58□□□□□ -0.08
CLN3-207ENST00000395653 COMMD7Q86VX2 200 aa14.58□□□□□ -0.08
CLN3-207ENST00000395653 AMN1Q8IY45 258 aa14.58□□□□□ -0.08
CLN3-207ENST00000395653 ANAPC16Q96DE5 110 aa14.58□□□□□ -0.08
CLN3-207ENST00000395653 IGHV1-24A0A0C4DH33 117 aa14.57□□□□□ -0.08
CLN3-207ENST00000395653 TMEM262E9PQX1 116 aa14.57□□□□□ -0.08
CLN3-207ENST00000395653 ADCYAP1P18509 176 aa14.57□□□□□ -0.08
CLN3-207ENST00000395653 ELOBQ15370 118 aa14.57□□□□□ -0.08
CLN3-207ENST00000395653 MRAP2Q96G30 205 aa14.57□□□□□ -0.08
CLN3-207ENST00000395653 Q9HAA7 133 aa14.57□□□□□ -0.08
CLN3-207ENST00000395653 TRAV8-3A0A0A6YYJ7 113 aa14.56□□□□□ -0.08
CLN3-207ENST00000395653 TRBV6-5A0A0K0K1A5 114 aa14.56□□□□□ -0.08
CLN3-207ENST00000395653 F8W036 122 aa14.56□□□□□ -0.08
CLN3-207ENST00000395653 PKHD1P08F94 4074 aa14.55□□□□□ -0.08
CLN3-207ENST00000395653 LINC00862A6NCI5 91 aa14.55□□□□□ -0.08
CLN3-207ENST00000395653 CAMPP49913 170 aa14.55□□□□□ -0.08
CLN3-207ENST00000395653 COTL1Q14019 142 aa14.55□□□□□ -0.08
CLN3-207ENST00000395653 SDHAF1A6NFY7 115 aa14.54□□□□□ -0.08
CLN3-207ENST00000395653 S100A8P05109 93 aa14.54□□□□□ -0.08
CLN3-207ENST00000395653 MPV17L2Q567V2 206 aa14.54□□□□□ -0.08
CLN3-207ENST00000395653 SEC11CQ9BY50 192 aa14.54□□□□□ -0.08
CLN3-207ENST00000395653 KLK12Q9UKR0 248 aa14.54□□□□□ -0.08
CLN3-207ENST00000395653 DYNC1H1Q14204 4646 aaKnown RBP14.53□□□□□ -0.08
CLN3-207ENST00000395653 A0A1B0GXF2 115 aa14.53□□□□□ -0.08
CLN3-207ENST00000395653 GAS8-AS1O95177 125 aa14.53□□□□□ -0.08
CLN3-207ENST00000395653 HBBP68871 147 aa14.53□□□□□ -0.08
CLN3-207ENST00000395653 MRPL54Q6P161 138 aaKnown RBP14.53□□□□□ -0.08
CLN3-207ENST00000395653 ATP5L2Q7Z4Y8 100 aa14.53□□□□□ -0.08
CLN3-207ENST00000395653 PSCAO43653 123 aa14.52□□□□□ -0.08
CLN3-207ENST00000395653 GAGE6Q13070 117 aa14.52□□□□□ -0.08
CLN3-207ENST00000395653 FAM104BQ5XKR9 115 aa14.52□□□□□ -0.08
CLN3-207ENST00000395653 ATRAIDQ6UW56 229 aa14.52□□□□□ -0.08
CLN3-207ENST00000395653 TMEM243Q9BU79 118 aa14.52□□□□□ -0.08
CLN3-207ENST00000395653 TM2D2Q9BX73 214 aa14.52□□□□□ -0.08
CLN3-207ENST00000395653 EREGO14944 169 aa14.51□□□□□ -0.09
CLN3-207ENST00000395653 NCR2O95944 276 aa14.51□□□□□ -0.09
CLN3-207ENST00000395653 ST20Q9HBF5 79 aa14.51□□□□□ -0.09
CLN3-207ENST00000395653 A0A087WTM6 91 aa14.5□□□□□ -0.09
CLN3-207ENST00000395653 PPP1R17O96001 155 aa14.5□□□□□ -0.09
CLN3-207ENST00000395653 RPS10P46783 165 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms