RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 TMEM170BQ5T4T1 132 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 TEN1Q86WV5 123 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 PPDPFLQ8WWR9 84 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 KIR2DL4Q99706 377 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 SPINK8P0C7L1 97 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 SLC25A29Q8N8R3 303 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 ZNRF2Q8NHG8 242 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 CARD19Q96LW7 228 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 TRBV20-1A0A075B6N2 111 aa15.29■□□□□ 0.04
CLK3-202ENST00000395066 IGHV3-16A0A0C4DH30 117 aa15.29■□□□□ 0.04
CLK3-202ENST00000395066 VCYO14598 125 aa15.29■□□□□ 0.04
CLK3-202ENST00000395066 CRYBA4P53673 196 aa15.29■□□□□ 0.04
CLK3-202ENST00000395066 SYNJ2BPP57105 145 aa15.29■□□□□ 0.04
CLK3-202ENST00000395066 TIMM17AQ99595 171 aa15.29■□□□□ 0.04
CLK3-202ENST00000395066 FBN2P35556 2912 aa15.28■□□□□ 0.04
CLK3-202ENST00000395066 C10orf126Q8N4M7 172 aa15.28■□□□□ 0.04
CLK3-202ENST00000395066 K7EMT4 169 aa15.28■□□□□ 0.04
CLK3-202ENST00000395066 ANKRD17O75179 2603 aaKnown RBP15.28■□□□□ 0.04
CLK3-202ENST00000395066 MT-ATP8P03928 68 aa15.28■□□□□ 0.04
CLK3-202ENST00000395066 CACNA1AO00555 2505 aa15.27■□□□□ 0.04
CLK3-202ENST00000395066 HTN1P15515 57 aa15.27■□□□□ 0.04
CLK3-202ENST00000395066 A0A0J9YX75 114 aa15.27■□□□□ 0.03
CLK3-202ENST00000395066 Q6ZUT4 128 aa15.27■□□□□ 0.03
CLK3-202ENST00000395066 PRM2P04554 102 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 XGP55808 180 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 ZNF876PQ49A33 203 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 SBSPONQ8IVN8 264 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 C9orf85Q96MD7 179 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 GEMIN7Q9H840 131 aaKnown RBP15.26■□□□□ 0.03
CLK3-202ENST00000395066 IGHV3-64A0A075B6Q5 118 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 A8MWV9 139 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 B4DSR2 109 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 TGFAP01135 160 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 AMELXQ99217 191 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 PRO1854Q9UHT4 67 aa15.26■□□□□ 0.03
CLK3-202ENST00000395066 J3QQQ9 107 aa15.25■□□□□ 0.03
CLK3-202ENST00000395066 FAM208BQ5VWN6 2430 aa15.25■□□□□ 0.03
CLK3-202ENST00000395066 ACACBO00763 2458 aa15.25■□□□□ 0.03
CLK3-202ENST00000395066 M0QY20 66 aa15.25■□□□□ 0.03
CLK3-202ENST00000395066 LGALS9O00182 355 aa15.25■□□□□ 0.03
CLK3-202ENST00000395066 SCGB1C2P0DMR2 95 aa15.25■□□□□ 0.03
CLK3-202ENST00000395066 IGHV3-73A0A0B4J1V6 119 aa15.24■□□□□ 0.03
CLK3-202ENST00000395066 TRBV27A0A0K0K1C4 114 aa15.24■□□□□ 0.03
CLK3-202ENST00000395066 LGALS3P17931 250 aaKnown RBP15.24■□□□□ 0.03
CLK3-202ENST00000395066 VCX2Q9H322 139 aa15.24■□□□□ 0.03
CLK3-202ENST00000395066 SNRPD3P62318 126 aaKnown RBP15.23■□□□□ 0.03
CLK3-202ENST00000395066 CLUHP3Q96NS8 147 aa15.23■□□□□ 0.03
CLK3-202ENST00000395066 ZFYVE26Q68DK2 2539 aa15.23■□□□□ 0.03
CLK3-202ENST00000395066 K7EQG2 157 aa15.23■□□□□ 0.03
CLK3-202ENST00000395066 HIST2H2BDQ6DRA6 164 aa15.23■□□□□ 0.03
CLK3-202ENST00000395066 P0DMU3 169 aa15.22■□□□□ 0.03
CLK3-202ENST00000395066 FAM231AP0DMU4 169 aa15.22■□□□□ 0.03
CLK3-202ENST00000395066 FAM231CP0DMU5 169 aa15.22■□□□□ 0.03
CLK3-202ENST00000395066 IGHV1OR15-1A0A075B7D0 117 aa15.22■□□□□ 0.03
CLK3-202ENST00000395066 TRAV26-1A0A087WT03 109 aa15.22■□□□□ 0.03
CLK3-202ENST00000395066 ANKRD29Q8N6D5 301 aa15.22■□□□□ 0.03
CLK3-202ENST00000395066 TRBV6-5A0A0K0K1A5 114 aa15.21■□□□□ 0.03
CLK3-202ENST00000395066 RBMY1A1P0DJD3 496 aaKnown RBP15.21■□□□□ 0.03
CLK3-202ENST00000395066 RBMY1CP0DJD4 496 aa15.21■□□□□ 0.03
CLK3-202ENST00000395066 RBMY1FQ15415 496 aaKnown RBP15.21■□□□□ 0.03
CLK3-202ENST00000395066 PROK1P58294 105 aa15.2■□□□□ 0.02
CLK3-202ENST00000395066 DEFB136Q30KP8 78 aa15.2■□□□□ 0.02
CLK3-202ENST00000395066 ZNF580Q9UK33 172 aa15.2■□□□□ 0.02
CLK3-202ENST00000395066 A4D1N5 150 aa15.19■□□□□ 0.02
CLK3-202ENST00000395066 C18orf65Q6ZTR6 163 aa15.19■□□□□ 0.02
CLK3-202ENST00000395066 RAX2Q96IS3 184 aa15.19■□□□□ 0.02
CLK3-202ENST00000395066 KNCNA6PVL3 124 aa15.19■□□□□ 0.02
CLK3-202ENST00000395066 MYO9AB2RTY4 2548 aa15.18■□□□□ 0.02
CLK3-202ENST00000395066 LEPROTO15243 131 aa15.18■□□□□ 0.02
CLK3-202ENST00000395066 HOXD3P31249 432 aaPredicted RBP15.18■□□□□ 0.02
CLK3-202ENST00000395066 Q5PR19 223 aa15.18■□□□□ 0.02
CLK3-202ENST00000395066 Q9UF83 564 aa15.18■□□□□ 0.02
CLK3-202ENST00000395066 TMEM223A0PJW6 202 aa15.17■□□□□ 0.02
CLK3-202ENST00000395066 LRRK2Q5S007 2527 aa15.17■□□□□ 0.02
CLK3-202ENST00000395066 ABCA12Q86UK0 2595 aa15.17■□□□□ 0.02
CLK3-202ENST00000395066 SLC25A20O43772 301 aa15.16■□□□□ 0.02
CLK3-202ENST00000395066 EIF4EBP3O60516 100 aaPredicted RBP15.16■□□□□ 0.02
CLK3-202ENST00000395066 IGHV3-33P01772 117 aa15.16■□□□□ 0.02
CLK3-202ENST00000395066 NSUN5P1Q3KNT7 163 aa15.16■□□□□ 0.02
CLK3-202ENST00000395066 RNASE13Q5GAN3 156 aaKnown RBP15.16■□□□□ 0.02
CLK3-202ENST00000395066 CEMP1Q6PRD7 247 aaPredicted RBP15.16■□□□□ 0.02
CLK3-202ENST00000395066 TMEM263Q8WUH6 116 aaKnown RBP15.16■□□□□ 0.02
CLK3-202ENST00000395066 TEX15Q9BXT5 2789 aa15.16■□□□□ 0.02
CLK3-202ENST00000395066 TRAV2A0A0B4J234 112 aa15.15■□□□□ 0.02
CLK3-202ENST00000395066 A0A0J9YXV3 536 aa15.15■□□□□ 0.02
CLK3-202ENST00000395066 C9JAW5 83 aa15.15■□□□□ 0.02
CLK3-202ENST00000395066 RHOHQ15669 191 aa15.15■□□□□ 0.02
CLK3-202ENST00000395066 DUX3Q96PT4 197 aa15.15■□□□□ 0.02
CLK3-202ENST00000395066 PTPN13Q12923 2485 aa15.15■□□□□ 0.02
CLK3-202ENST00000395066 TRPT1Q86TN4 253 aaKnown RBP15.15■□□□□ 0.02
CLK3-202ENST00000395066 BEX4Q9NWD9 120 aaPredicted RBP15.15■□□□□ 0.02
CLK3-202ENST00000395066 TMEM262E9PQX1 116 aa15.14■□□□□ 0.01
CLK3-202ENST00000395066 ODF3Q96PU9 254 aa15.14■□□□□ 0.01
CLK3-202ENST00000395066 ERG28Q9UKR5 140 aa15.14■□□□□ 0.01
CLK3-202ENST00000395066 TLN2Q9Y4G6 2542 aa15.14■□□□□ 0.01
CLK3-202ENST00000395066 SLURP1P55000 103 aa15.14■□□□□ 0.01
CLK3-202ENST00000395066 C20orf203Q8NBC4 194 aa15.14■□□□□ 0.01
CLK3-202ENST00000395066 A0A0B4J2C4 111 aa15.13■□□□□ 0.01
CLK3-202ENST00000395066 ADARB2-AS1A8MUL3 147 aa15.13■□□□□ 0.01
CLK3-202ENST00000395066 H7C2G1 150 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms