RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RASL10AQ92737 203 aa13.27□□□□□ -0.29
CCDC88C-203ENST00000389856 PTH2Q96A98 100 aa13.27□□□□□ -0.29
CCDC88C-203ENST00000389856 COX11Q9Y6N1 276 aa13.27□□□□□ -0.29
CCDC88C-203ENST00000389856 TRAV12-1A0A0B4J245 112 aa13.26□□□□□ -0.29
CCDC88C-203ENST00000389856 IGKCP01834 107 aa13.26□□□□□ -0.29
CCDC88C-203ENST00000389856 C14orf178Q8N769 122 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-203ENST00000389856 C18orf15Q96N68 181 aa13.26□□□□□ -0.29
CCDC88C-203ENST00000389856 WFDC10AQ9H1F0 79 aa13.26□□□□□ -0.29
CCDC88C-203ENST00000389856 SEC11AP67812 179 aa13.25□□□□□ -0.29
CCDC88C-203ENST00000389856 KIF25-AS1Q9Y6Z4 181 aa13.25□□□□□ -0.29
CCDC88C-203ENST00000389856 TENM1Q9UKZ4 2725 aa13.25□□□□□ -0.29
CCDC88C-203ENST00000389856 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 M0R2P5 195 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 ZNF876PQ49A33 203 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 C2orf91Q6ZV80 131 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 CSTL1Q9H114 145 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 DKK2Q9UBU2 259 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 A0A087WX48 190 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 MGPP08493 103 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 PLNP26678 52 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 C1orf158Q8N1D5 194 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 SPATA3Q8NHX4 192 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 TOMM6Q96B49 74 aa13.24□□□□□ -0.29
CCDC88C-203ENST00000389856 IGHV3OR16-12A0A075B7B8 117 aa13.23□□□□□ -0.29
CCDC88C-203ENST00000389856 A8MWV9 139 aa13.22□□□□□ -0.29
CCDC88C-203ENST00000389856 APOC4P55056 127 aa13.22□□□□□ -0.29
CCDC88C-203ENST00000389856 LINC00315P59091 139 aa13.22□□□□□ -0.29
CCDC88C-203ENST00000389856 TMEM97Q5BJF2 176 aa13.22□□□□□ -0.29
CCDC88C-203ENST00000389856 KIR2DL5BQ8NHK3 375 aa13.22□□□□□ -0.29
CCDC88C-203ENST00000389856 TMEM263Q8WUH6 116 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-203ENST00000389856 HHLA3Q9XRX5 114 aa13.22□□□□□ -0.29
CCDC88C-203ENST00000389856 HSD52Q0P140 79 aa13.21□□□□□ -0.29
CCDC88C-203ENST00000389856 C16orf74Q96GX8 76 aa13.21□□□□□ -0.29
CCDC88C-203ENST00000389856 HIGD1BQ9P298 99 aa13.21□□□□□ -0.29
CCDC88C-203ENST00000389856 TRBV6-5A0A0K0K1A5 114 aa13.21□□□□□ -0.3
CCDC88C-203ENST00000389856 MUC4Q99102 2169 aa13.2□□□□□ -0.3
CCDC88C-203ENST00000389856 H7C1H1 209 aa13.2□□□□□ -0.3
CCDC88C-203ENST00000389856 SPRY2O43597 315 aa13.2□□□□□ -0.3
CCDC88C-203ENST00000389856 GIG44P09565 113 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-203ENST00000389856 C11orf72Q8NBR9 251 aa13.2□□□□□ -0.3
CCDC88C-203ENST00000389856 SCGB3A1Q96QR1 104 aa13.2□□□□□ -0.3
CCDC88C-203ENST00000389856 F5H697 171 aa13.19□□□□□ -0.3
CCDC88C-203ENST00000389856 RRN3P1Q2M238 152 aa13.19□□□□□ -0.3
CCDC88C-203ENST00000389856 A6NDN8 102 aa13.18□□□□□ -0.3
CCDC88C-203ENST00000389856 RHODO00212 210 aa13.18□□□□□ -0.3
CCDC88C-203ENST00000389856 VCYO14598 125 aa13.18□□□□□ -0.3
CCDC88C-203ENST00000389856 CSNK1G2-AS1Q8NCQ2 148 aa13.18□□□□□ -0.3
CCDC88C-203ENST00000389856 RPL39LQ96EH5 51 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-203ENST00000389856 F8VRH5 84 aa13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 NMUP48645 174 aa13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 POLR2KP53803 58 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 ERASQ7Z444 233 aa13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 RNASE8Q8TDE3 154 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 TP73-AS1Q9UF72 201 aa13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 SMIM9A6NGZ8 99 aa13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 TAX1BP3O14907 124 aa13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 UBE2V1Q13404 147 aa13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 ZNF56Q15929 161 aa13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 FAM74A4Q5TZK3 123 aa13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 MRPL35Q9NZE8 188 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-203ENST00000389856 A0A087WWL8 130 aa13.16□□□□□ -0.3
CCDC88C-203ENST00000389856 NPSP0C0P6 89 aa13.16□□□□□ -0.3
CCDC88C-203ENST00000389856 SUMO4Q6EEV6 95 aa13.16□□□□□ -0.3
CCDC88C-203ENST00000389856 C2orf66Q6UXQ4 117 aa13.16□□□□□ -0.3
CCDC88C-203ENST00000389856 KIR2DL4Q99706 377 aa13.16□□□□□ -0.3
CCDC88C-203ENST00000389856 CYSLTR1Q9Y271 337 aa13.16□□□□□ -0.3
CCDC88C-203ENST00000389856 DAZ2Q13117 558 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-203ENST00000389856 ZC2HC1BQ5TFG8 222 aa13.15□□□□□ -0.3
CCDC88C-203ENST00000389856 NEXN-AS1Q8NBZ9 246 aa13.15□□□□□ -0.3
CCDC88C-203ENST00000389856 IL17DQ8TAD2 202 aa13.15□□□□□ -0.3
CCDC88C-203ENST00000389856 CRYGDP07320 174 aa13.14□□□□□ -0.31
CCDC88C-203ENST00000389856 AZU1P20160 251 aa13.14□□□□□ -0.31
CCDC88C-203ENST00000389856 EGFEM1PQ0D2K5 195 aa13.14□□□□□ -0.31
CCDC88C-203ENST00000389856 TMEM141Q96I45 108 aa13.14□□□□□ -0.31
CCDC88C-203ENST00000389856 JPT2Q9H910 190 aa13.14□□□□□ -0.31
CCDC88C-203ENST00000389856 EDA2RQ9HAV5 297 aa13.14□□□□□ -0.31
CCDC88C-203ENST00000389856 CHTOPQ9Y3Y2 248 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-203ENST00000389856 NOTCH3Q9UM47 2321 aa13.14□□□□□ -0.31
CCDC88C-203ENST00000389856 TRBV27A0A0K0K1C4 114 aa13.13□□□□□ -0.31
CCDC88C-203ENST00000389856 PAPPA-AS1Q5QFB9 102 aa13.13□□□□□ -0.31
CCDC88C-203ENST00000389856 PCP2Q8IVA1 136 aa13.13□□□□□ -0.31
CCDC88C-203ENST00000389856 CIDEAO60543 219 aa13.13□□□□□ -0.31
CCDC88C-203ENST00000389856 PTTG1IPP53801 180 aa13.13□□□□□ -0.31
CCDC88C-203ENST00000389856 OXLD1Q5BKU9 147 aa13.13□□□□□ -0.31
CCDC88C-203ENST00000389856 ZFP2Q6ZN57 461 aa13.13□□□□□ -0.31
CCDC88C-203ENST00000389856 TRGV1A0A0A0MS02 117 aa13.12□□□□□ -0.31
CCDC88C-203ENST00000389856 RHOHQ15669 191 aa13.12□□□□□ -0.31
CCDC88C-203ENST00000389856 MRPL16Q9NX20 251 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-203ENST00000389856 H3BRM9 83 aa13.11□□□□□ -0.31
CCDC88C-203ENST00000389856 RS1O15537 224 aa13.11□□□□□ -0.31
CCDC88C-203ENST00000389856 PRM2P04554 102 aa13.11□□□□□ -0.31
CCDC88C-203ENST00000389856 TAL2Q16559 108 aa13.11□□□□□ -0.31
CCDC88C-203ENST00000389856 TIMM17AQ99595 171 aa13.11□□□□□ -0.31
CCDC88C-203ENST00000389856 IGHV4-30-4P0DP06 118 aa13.1□□□□□ -0.31
CCDC88C-203ENST00000389856 VAMP3Q15836 100 aa13.1□□□□□ -0.31
CCDC88C-203ENST00000389856 CFAP126Q5VTH2 177 aa13.1□□□□□ -0.31
CCDC88C-203ENST00000389856 BAALCQ8WXS3 180 aa13.1□□□□□ -0.31
CCDC88C-203ENST00000389856 OVOL2Q9BRP0 275 aa13.1□□□□□ -0.31
CCDC88C-203ENST00000389856 VWFP04275 2813 aa13.1□□□□□ -0.31
CCDC88C-203ENST00000389856 IGKV2D-26A0A0A0MRZ7 120 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms