RNA–Protein interactions for RNA: ENST00000343483.6

HOXA9-201, Transcript of homeobox A9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA9, Length 2,060 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-201ENST00000343483 CSTL1Q9H114 145 aa13.63□□□□□ -0.23
HOXA9-201ENST00000343483 IGKV2D-26A0A0A0MRZ7 120 aa13.63□□□□□ -0.23
HOXA9-201ENST00000343483 ZC2HC1BQ5TFG8 222 aa13.63□□□□□ -0.23
HOXA9-201ENST00000343483 SUMO4Q6EEV6 95 aa13.63□□□□□ -0.23
HOXA9-201ENST00000343483 GTSCR1Q86UQ5 136 aa13.63□□□□□ -0.23
HOXA9-201ENST00000343483 KRTAP10-3P60369 221 aa13.62□□□□□ -0.23
HOXA9-201ENST00000343483 INSP01308 110 aa13.62□□□□□ -0.23
HOXA9-201ENST00000343483 PTTG1IPP53801 180 aa13.62□□□□□ -0.23
HOXA9-201ENST00000343483 SEC11AP67812 179 aa13.62□□□□□ -0.23
HOXA9-201ENST00000343483 RIPPLY3P57055 190 aa13.61□□□□□ -0.23
HOXA9-201ENST00000343483 HSD52Q0P140 79 aa13.61□□□□□ -0.23
HOXA9-201ENST00000343483 ZNF56Q15929 161 aa13.61□□□□□ -0.23
HOXA9-201ENST00000343483 C2orf66Q6UXQ4 117 aa13.61□□□□□ -0.23
HOXA9-201ENST00000343483 ERASQ7Z444 233 aa13.61□□□□□ -0.23
HOXA9-201ENST00000343483 LINC01587Q99440 93 aa13.61□□□□□ -0.23
HOXA9-201ENST00000343483 TRAV12-1A0A0B4J245 112 aa13.6□□□□□ -0.23
HOXA9-201ENST00000343483 UBE2V1Q13404 147 aa13.6□□□□□ -0.23
HOXA9-201ENST00000343483 NEGR1Q7Z3B1 354 aa13.6□□□□□ -0.23
HOXA9-201ENST00000343483 XCL2Q9UBD3 114 aa13.6□□□□□ -0.23
HOXA9-201ENST00000343483 CCL25O15444 150 aa13.6□□□□□ -0.23
HOXA9-201ENST00000343483 PLNP26678 52 aa13.6□□□□□ -0.23
HOXA9-201ENST00000343483 VAMP3Q15836 100 aa13.6□□□□□ -0.23
HOXA9-201ENST00000343483 NDUFA11Q86Y39 141 aa13.6□□□□□ -0.23
HOXA9-201ENST00000343483 H7C1H1 209 aa13.59□□□□□ -0.23
HOXA9-201ENST00000343483 IGLV1-51P01701 117 aa13.59□□□□□ -0.23
HOXA9-201ENST00000343483 CRYGDP07320 174 aa13.59□□□□□ -0.23
HOXA9-201ENST00000343483 RPL32P62910 135 aaKnown RBP13.59□□□□□ -0.23
HOXA9-201ENST00000343483 CLUHP3Q96NS8 147 aa13.59□□□□□ -0.23
HOXA9-201ENST00000343483 TTTY13Q9BZ97 58 aa13.59□□□□□ -0.23
HOXA9-201ENST00000343483 COL6A5A8TX70 2615 aa13.58□□□□□ -0.24
HOXA9-201ENST00000343483 F8VRH5 84 aa13.58□□□□□ -0.24
HOXA9-201ENST00000343483 PF4P02776 101 aa13.57□□□□□ -0.24
HOXA9-201ENST00000343483 ZNF415Q09FC8 603 aa13.57□□□□□ -0.24
HOXA9-201ENST00000343483 TRPT1Q86TN4 253 aaKnown RBP13.57□□□□□ -0.24
HOXA9-201ENST00000343483 NEXN-AS1Q8NBZ9 246 aa13.57□□□□□ -0.24
HOXA9-201ENST00000343483 CHTOPQ9Y3Y2 248 aaKnown RBP13.57□□□□□ -0.24
HOXA9-201ENST00000343483 A6NDN8 102 aa13.56□□□□□ -0.24
HOXA9-201ENST00000343483 POLR2KP53803 58 aaKnown RBP13.56□□□□□ -0.24
HOXA9-201ENST00000343483 BAALCQ8WXS3 180 aa13.56□□□□□ -0.24
HOXA9-201ENST00000343483 IGHV3OR16-12A0A075B7B8 117 aa13.55□□□□□ -0.24
HOXA9-201ENST00000343483 VCYO14598 125 aa13.55□□□□□ -0.24
HOXA9-201ENST00000343483 M0R2P5 195 aa13.55□□□□□ -0.24
HOXA9-201ENST00000343483 DEFB104AQ8WTQ1 72 aa13.55□□□□□ -0.24
HOXA9-201ENST00000343483 MDFIQ99750 246 aa13.55□□□□□ -0.24
HOXA9-201ENST00000343483 WFDC10AQ9H1F0 79 aa13.55□□□□□ -0.24
HOXA9-201ENST00000343483 HIGD1BQ9P298 99 aa13.55□□□□□ -0.24
HOXA9-201ENST00000343483 CYSLTR1Q9Y271 337 aa13.55□□□□□ -0.24
HOXA9-201ENST00000343483 SDHAF1A6NFY7 115 aa13.54□□□□□ -0.24
HOXA9-201ENST00000343483 M0QY20 66 aa13.54□□□□□ -0.24
HOXA9-201ENST00000343483 CMC4P56277 68 aaPredicted RBP13.54□□□□□ -0.24
HOXA9-201ENST00000343483 ZFP2Q6ZN57 461 aa13.54□□□□□ -0.24
HOXA9-201ENST00000343483 KIR2DL4Q99706 377 aa13.54□□□□□ -0.24
HOXA9-201ENST00000343483 LINC00467Q9BRT7 94 aa13.54□□□□□ -0.24
HOXA9-201ENST00000343483 IGHV3-73A0A0B4J1V6 119 aa13.53□□□□□ -0.24
HOXA9-201ENST00000343483 C11orf72Q8NBR9 251 aa13.53□□□□□ -0.24
HOXA9-201ENST00000343483 CHAC1Q9BUX1 264 aa13.53□□□□□ -0.24
HOXA9-201ENST00000343483 TP53TG1Q9Y2A0 90 aa13.53□□□□□ -0.24
HOXA9-201ENST00000343483 TRBV25-1A0A075B6N4 114 aa13.52□□□□□ -0.24
HOXA9-201ENST00000343483 TRAV8-6A0A0B4J262 113 aa13.52□□□□□ -0.24
HOXA9-201ENST00000343483 TRBV6-5A0A0K0K1A5 114 aa13.52□□□□□ -0.24
HOXA9-201ENST00000343483 PRSS29PA6NIE9 313 aa13.52□□□□□ -0.25
HOXA9-201ENST00000343483 BEAN1Q3B7T3 259 aa13.52□□□□□ -0.25
HOXA9-201ENST00000343483 AMMECR1LQ6DCA0 310 aa13.52□□□□□ -0.25
HOXA9-201ENST00000343483 MORN3Q6PF18 240 aaPredicted RBP13.52□□□□□ -0.25
HOXA9-201ENST00000343483 C1orf158Q8N1D5 194 aa13.52□□□□□ -0.25
HOXA9-201ENST00000343483 H3BRM9 83 aa13.51□□□□□ -0.25
HOXA9-201ENST00000343483 KRTAP24-1Q3LI83 254 aa13.51□□□□□ -0.25
HOXA9-201ENST00000343483 MAPKAPK5-AS1Q8N8E1 139 aa13.51□□□□□ -0.25
HOXA9-201ENST00000343483 LINC00482Q8N8I6 264 aa13.51□□□□□ -0.25
HOXA9-201ENST00000343483 OR4C5Q8NGB2 326 aa13.51□□□□□ -0.25
HOXA9-201ENST00000343483 TRBV27A0A0K0K1C4 114 aa13.51□□□□□ -0.25
HOXA9-201ENST00000343483 LINC01549A6NIU2 74 aa13.51□□□□□ -0.25
HOXA9-201ENST00000343483 AZU1P20160 251 aa13.51□□□□□ -0.25
HOXA9-201ENST00000343483 CBY1Q9Y3M2 126 aa13.51□□□□□ -0.25
HOXA9-201ENST00000343483 A8MWV9 139 aa13.5□□□□□ -0.25
HOXA9-201ENST00000343483 C19orf73Q9NVV2 129 aa13.5□□□□□ -0.25
HOXA9-201ENST00000343483 MRPL16Q9NX20 251 aaKnown RBP13.5□□□□□ -0.25
HOXA9-201ENST00000343483 TENM1Q9UKZ4 2725 aa13.5□□□□□ -0.25
HOXA9-201ENST00000343483 RPL35AP18077 110 aaKnown RBP13.49□□□□□ -0.25
HOXA9-201ENST00000343483 GCSHP23434 173 aa13.49□□□□□ -0.25
HOXA9-201ENST00000343483 FAM110AQ9BQ89 295 aa13.49□□□□□ -0.25
HOXA9-201ENST00000343483 DNHD1Q96M86 4753 aa13.49□□□□□ -0.25
HOXA9-201ENST00000343483 RPL39P62891 51 aaKnown RBP13.49□□□□□ -0.25
HOXA9-201ENST00000343483 SPXQ9BT56 116 aa13.49□□□□□ -0.25
HOXA9-201ENST00000343483 IGIPA6NJ69 53 aa13.48□□□□□ -0.25
HOXA9-201ENST00000343483 TSHBP01222 138 aa13.48□□□□□ -0.25
HOXA9-201ENST00000343483 PIK3CD-AS1Q5SR53 167 aa13.48□□□□□ -0.25
HOXA9-201ENST00000343483 C9orf118A6NHY6 69 aa13.48□□□□□ -0.25
HOXA9-201ENST00000343483 CFAP126Q5VTH2 177 aa13.48□□□□□ -0.25
HOXA9-201ENST00000343483 OR11H2Q8NH07 326 aa13.48□□□□□ -0.25
HOXA9-201ENST00000343483 SVIPQ8NHG7 77 aa13.48□□□□□ -0.25
HOXA9-201ENST00000343483 TMEM141Q96I45 108 aa13.48□□□□□ -0.25
HOXA9-201ENST00000343483 STAB1Q9NY15 2570 aa13.47□□□□□ -0.25
HOXA9-201ENST00000343483 PTH2Q96A98 100 aa13.47□□□□□ -0.25
HOXA9-201ENST00000343483 P0DMU3 169 aa13.46□□□□□ -0.25
HOXA9-201ENST00000343483 FAM231AP0DMU4 169 aa13.46□□□□□ -0.25
HOXA9-201ENST00000343483 FAM231CP0DMU5 169 aa13.46□□□□□ -0.25
HOXA9-201ENST00000343483 FXYD2P54710 66 aa13.46□□□□□ -0.25
HOXA9-201ENST00000343483 UFSP1Q6NVU6 142 aa13.46□□□□□ -0.25
HOXA9-201ENST00000343483 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms