RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 PRO0461Q9UI25 63 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 RBAKDNA6NC62 111 aa12.33□□□□□ -0.44
NPHP3-201ENST00000337331 F5H768 121 aa12.33□□□□□ -0.44
NPHP3-201ENST00000337331 IGHV4-59P01825 116 aa12.33□□□□□ -0.44
NPHP3-201ENST00000337331 PRAC2D3DTV9 90 aa12.33□□□□□ -0.44
NPHP3-201ENST00000337331 CRIP2P52943 208 aaPredicted RBP12.33□□□□□ -0.44
NPHP3-201ENST00000337331 ZNF80P51504 273 aaPredicted RBP12.33□□□□□ -0.44
NPHP3-201ENST00000337331 Q8N9W7 124 aa12.33□□□□□ -0.44
NPHP3-201ENST00000337331 FAM19A5Q7Z5A7 132 aaPredicted RBP12.32□□□□□ -0.44
NPHP3-201ENST00000337331 KLK5Q9Y337 293 aaPredicted RBP12.32□□□□□ -0.44
NPHP3-201ENST00000337331 IGHV4-61A0A0C4DH41 118 aa12.32□□□□□ -0.44
NPHP3-201ENST00000337331 IGKV3D-7A0A0C4DH55 119 aa12.32□□□□□ -0.44
NPHP3-201ENST00000337331 INS-IGF2F8WCM5 200 aa12.32□□□□□ -0.44
NPHP3-201ENST00000337331 CGB3P0DN86 165 aa12.32□□□□□ -0.44
NPHP3-201ENST00000337331 CGB7P0DN87 165 aa12.32□□□□□ -0.44
NPHP3-201ENST00000337331 SS18Q15532 418 aa12.32□□□□□ -0.44
NPHP3-201ENST00000337331 MRPL53Q96EL3 112 aaKnown RBP12.32□□□□□ -0.44
NPHP3-201ENST00000337331 ELANEP08246 267 aa12.32□□□□□ -0.44
NPHP3-201ENST00000337331 SPANXDQ9BXN6 97 aa12.32□□□□□ -0.44
NPHP3-201ENST00000337331 U3KQK5 164 aa12.32□□□□□ -0.44
NPHP3-201ENST00000337331 DEFB112Q30KQ8 113 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 ICOSQ9Y6W8 199 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 Q96MF0 132 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 PKIGQ9Y2B9 76 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 JMJD1CQ15652 2540 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 A0A0J9YY99 117 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 LINC01548A6NM66 108 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 LGALS9O00182 355 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 IGLV2-11P01706 119 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 INAFM2P0DMQ5 153 aa12.31□□□□□ -0.44
NPHP3-201ENST00000337331 ACYP1P07311 99 aa12.3□□□□□ -0.44
NPHP3-201ENST00000337331 BRCA2P51587 3418 aa12.3□□□□□ -0.44
NPHP3-201ENST00000337331 ZFYVE26Q68DK2 2539 aa12.3□□□□□ -0.44
NPHP3-201ENST00000337331 ATOX1O00244 68 aa12.3□□□□□ -0.44
NPHP3-201ENST00000337331 RPL39P62891 51 aaKnown RBP12.3□□□□□ -0.44
NPHP3-201ENST00000337331 IGF2-ASQ6U949 168 aa12.3□□□□□ -0.44
NPHP3-201ENST00000337331 H3BUA1 57 aa12.29□□□□□ -0.44
NPHP3-201ENST00000337331 TMEM243Q9BU79 118 aa12.29□□□□□ -0.44
NPHP3-201ENST00000337331 IGHV4-38-2P0DP08 117 aa12.29□□□□□ -0.44
NPHP3-201ENST00000337331 H3BT86 120 aa12.29□□□□□ -0.44
NPHP3-201ENST00000337331 HOXD3P31249 432 aaPredicted RBP12.29□□□□□ -0.44
NPHP3-201ENST00000337331 SRSF2Q01130 221 aaKnown RBP12.28□□□□□ -0.44
NPHP3-201ENST00000337331 SPANXCQ9NY87 97 aa12.28□□□□□ -0.44
NPHP3-201ENST00000337331 DEFB136Q30KP8 78 aa12.28□□□□□ -0.44
NPHP3-201ENST00000337331 Q6Q795 121 aa12.28□□□□□ -0.44
NPHP3-201ENST00000337331 BAALC-AS2P0C853 105 aa12.28□□□□□ -0.44
NPHP3-201ENST00000337331 HRCT1Q6UXD1 115 aa12.28□□□□□ -0.44
NPHP3-201ENST00000337331 RANBP2P49792 3224 aaKnown RBP12.28□□□□□ -0.44
NPHP3-201ENST00000337331 IGHV3-33P01772 117 aa12.28□□□□□ -0.44
NPHP3-201ENST00000337331 RNF185Q96GF1 192 aa12.28□□□□□ -0.44
NPHP3-201ENST00000337331 NXPH4O95158 308 aa12.27□□□□□ -0.44
NPHP3-201ENST00000337331 DEFB1P60022 68 aa12.27□□□□□ -0.45
NPHP3-201ENST00000337331 TOMM6Q96B49 74 aa12.27□□□□□ -0.45
NPHP3-201ENST00000337331 ANKRD11Q6UB99 2663 aaPredicted RBP12.27□□□□□ -0.45
NPHP3-201ENST00000337331 J3QLI3 93 aa12.27□□□□□ -0.45
NPHP3-201ENST00000337331 FANCD2OSQ96PS1 177 aa12.27□□□□□ -0.45
NPHP3-201ENST00000337331 ABCA12Q86UK0 2595 aa12.26□□□□□ -0.45
NPHP3-201ENST00000337331 RHOHQ15669 191 aa12.26□□□□□ -0.45
NPHP3-201ENST00000337331 LINC00643Q86TS7 51 aa12.26□□□□□ -0.45
NPHP3-201ENST00000337331 OVOL2Q9BRP0 275 aa12.26□□□□□ -0.45
NPHP3-201ENST00000337331 CPAMD8Q8IZJ3 1885 aa12.26□□□□□ -0.45
NPHP3-201ENST00000337331 Q6ZS46 218 aa12.26□□□□□ -0.45
NPHP3-201ENST00000337331 SLC25A29Q8N8R3 303 aa12.26□□□□□ -0.45
NPHP3-201ENST00000337331 NRGNQ92686 78 aa12.26□□□□□ -0.45
NPHP3-201ENST00000337331 A0A0B4J2C4 111 aa12.25□□□□□ -0.45
NPHP3-201ENST00000337331 ZFP36P26651 326 aaKnown RBP12.25□□□□□ -0.45
NPHP3-201ENST00000337331 UBE2D3P61077 147 aa12.25□□□□□ -0.45
NPHP3-201ENST00000337331 UBE2D2P62837 147 aa12.25□□□□□ -0.45
NPHP3-201ENST00000337331 C22orf34Q6ZV56 151 aa12.25□□□□□ -0.45
NPHP3-201ENST00000337331 IGHV4-30-2A0A087WSY4 118 aa12.25□□□□□ -0.45
NPHP3-201ENST00000337331 TRBV6-1A0A0K0K1D8 114 aa12.25□□□□□ -0.45
NPHP3-201ENST00000337331 EXPH5Q8NEV8 1989 aa12.25□□□□□ -0.45
NPHP3-201ENST00000337331 A0A0J9YXV3 536 aa12.25□□□□□ -0.45
NPHP3-201ENST00000337331 UBE2D1P51668 147 aa12.24□□□□□ -0.45
NPHP3-201ENST00000337331 FHL3Q13643 280 aa12.24□□□□□ -0.45
NPHP3-201ENST00000337331 ADORA2A-AS1P86434 159 aa12.24□□□□□ -0.45
NPHP3-201ENST00000337331 DAND5Q8N907 189 aa12.24□□□□□ -0.45
NPHP3-201ENST00000337331 NEXN-AS1Q8NBZ9 246 aa12.24□□□□□ -0.45
NPHP3-201ENST00000337331 ZMAT4Q9H898 229 aa12.24□□□□□ -0.45
NPHP3-201ENST00000337331 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.24□□□□□ -0.45
NPHP3-201ENST00000337331 IGKV2-29A2NJV5 120 aaPredicted RBP12.24□□□□□ -0.45
NPHP3-201ENST00000337331 TINCRA0A1B0GVN0 87 aa12.23□□□□□ -0.45
NPHP3-201ENST00000337331 TRIAP1O43715 76 aa12.23□□□□□ -0.45
NPHP3-201ENST00000337331 U3KQE9 123 aa12.23□□□□□ -0.45
NPHP3-201ENST00000337331 CRYGBP07316 175 aa12.23□□□□□ -0.45
NPHP3-201ENST00000337331 SUMO4Q6EEV6 95 aa12.23□□□□□ -0.45
NPHP3-201ENST00000337331 LRRC75A-AS1Q8N1F1 130 aa12.23□□□□□ -0.45
NPHP3-201ENST00000337331 MRAPQ8TCY5 172 aa12.23□□□□□ -0.45
NPHP3-201ENST00000337331 C5orf56Q8N8D9 126 aa12.23□□□□□ -0.45
NPHP3-201ENST00000337331 ZNF22P17026 224 aaPredicted RBP12.22□□□□□ -0.45
NPHP3-201ENST00000337331 IGHV3-30P01768 117 aa12.22□□□□□ -0.45
NPHP3-201ENST00000337331 IGHV3-30-5P0DP03 117 aa12.22□□□□□ -0.45
NPHP3-201ENST00000337331 DAD1P61803 113 aa12.22□□□□□ -0.45
NPHP3-201ENST00000337331 NHLRC4P0CG21 123 aaPredicted RBP12.21□□□□□ -0.45
NPHP3-201ENST00000337331 TET2Q6N021 2002 aaPredicted RBP12.21□□□□□ -0.45
NPHP3-201ENST00000337331 DSCAMO60469 2012 aa12.21□□□□□ -0.45
NPHP3-201ENST00000337331 A0A096LPF7 62 aa12.21□□□□□ -0.45
NPHP3-201ENST00000337331 Q8NA96 180 aa12.21□□□□□ -0.45
NPHP3-201ENST00000337331 OPRPNQ99935 248 aaPredicted RBP12.21□□□□□ -0.45
NPHP3-201ENST00000337331 LINC00574Q9H8X3 128 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms