RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 HIGD1CA8MV81 97 aa13.83□□□□□ -0.2
UPF3A-211ENST00000618700 CIDEAO60543 219 aa13.83□□□□□ -0.2
UPF3A-211ENST00000618700 TENM2Q9NT68 2774 aa13.83□□□□□ -0.2
UPF3A-211ENST00000618700 SMIM27A0A1W2PRY6 76 aa13.82□□□□□ -0.2
UPF3A-211ENST00000618700 MT-ND4LP03901 98 aa13.82□□□□□ -0.2
UPF3A-211ENST00000618700 NDUFA5Q16718 116 aa13.82□□□□□ -0.2
UPF3A-211ENST00000618700 TMEM88Q6PEY1 159 aa13.82□□□□□ -0.2
UPF3A-211ENST00000618700 ZFP2Q6ZN57 461 aa13.82□□□□□ -0.2
UPF3A-211ENST00000618700 SLC7A5P1Q8MH63 180 aa13.82□□□□□ -0.2
UPF3A-211ENST00000618700 ANAPC16Q96DE5 110 aa13.82□□□□□ -0.2
UPF3A-211ENST00000618700 PGLYRP4Q96LB8 373 aa13.82□□□□□ -0.2
UPF3A-211ENST00000618700 SAMD10Q9BYL1 202 aa13.82□□□□□ -0.2
UPF3A-211ENST00000618700 CRYGDP07320 174 aa13.81□□□□□ -0.2
UPF3A-211ENST00000618700 SSTP61278 116 aa13.81□□□□□ -0.2
UPF3A-211ENST00000618700 AP1S3Q96PC3 154 aa13.81□□□□□ -0.2
UPF3A-211ENST00000618700 MSRB1Q9NZV6 116 aa13.81□□□□□ -0.2
UPF3A-211ENST00000618700 A0A087WWL8 130 aa13.8□□□□□ -0.2
UPF3A-211ENST00000618700 TRGV4A0A0C4DH28 118 aa13.8□□□□□ -0.2
UPF3A-211ENST00000618700 IGLL5B9A064 214 aa13.8□□□□□ -0.2
UPF3A-211ENST00000618700 RHODO00212 210 aa13.8□□□□□ -0.2
UPF3A-211ENST00000618700 GATA1P15976 413 aaPredicted RBP13.8□□□□□ -0.2
UPF3A-211ENST00000618700 NTF3P20783 257 aa13.8□□□□□ -0.2
UPF3A-211ENST00000618700 NUP35Q8NFH5 326 aa13.8□□□□□ -0.2
UPF3A-211ENST00000618700 NAT8BQ9UHF3 227 aa13.8□□□□□ -0.2
UPF3A-211ENST00000618700 PRO0255Q9UI72 69 aa13.8□□□□□ -0.2
UPF3A-211ENST00000618700 TRAV26-1A0A087WT03 109 aa13.79□□□□□ -0.2
UPF3A-211ENST00000618700 IGHV3-73A0A0B4J1V6 119 aa13.79□□□□□ -0.2
UPF3A-211ENST00000618700 CRYBA4P53673 196 aa13.79□□□□□ -0.2
UPF3A-211ENST00000618700 SLAQ13239 276 aa13.79□□□□□ -0.2
UPF3A-211ENST00000618700 VSIG2Q96IQ7 327 aa13.79□□□□□ -0.2
UPF3A-211ENST00000618700 KIF25-AS1Q9Y6Z4 181 aa13.79□□□□□ -0.2
UPF3A-211ENST00000618700 H3BNG1 76 aa13.78□□□□□ -0.2
UPF3A-211ENST00000618700 CLRN3Q8NCR9 226 aa13.78□□□□□ -0.2
UPF3A-211ENST00000618700 MRPL18Q9H0U6 180 aaKnown RBP13.78□□□□□ -0.2
UPF3A-211ENST00000618700 HHLA3Q9XRX5 114 aa13.78□□□□□ -0.2
UPF3A-211ENST00000618700 A0A1B0GUT8 65 aa13.77□□□□□ -0.21
UPF3A-211ENST00000618700 TCTAP57738 103 aa13.77□□□□□ -0.21
UPF3A-211ENST00000618700 TWIST1Q15672 202 aa13.77□□□□□ -0.21
UPF3A-211ENST00000618700 FAM74A4Q5TZK3 123 aa13.77□□□□□ -0.21
UPF3A-211ENST00000618700 BORCS7Q96B45 105 aa13.77□□□□□ -0.21
UPF3A-211ENST00000618700 APLNQ9ULZ1 77 aa13.77□□□□□ -0.21
UPF3A-211ENST00000618700 A0A0J9YY99 117 aa13.76□□□□□ -0.21
UPF3A-211ENST00000618700 APOC3P02656 99 aa13.76□□□□□ -0.21
UPF3A-211ENST00000618700 TRGC1P0CF51 173 aa13.76□□□□□ -0.21
UPF3A-211ENST00000618700 LINC00315P59091 139 aa13.76□□□□□ -0.21
UPF3A-211ENST00000618700 RHEBQ15382 184 aa13.76□□□□□ -0.21
UPF3A-211ENST00000618700 C14orf178Q8N769 122 aaPredicted RBP13.76□□□□□ -0.21
UPF3A-211ENST00000618700 C15orf53Q8NAA6 179 aa13.76□□□□□ -0.21
UPF3A-211ENST00000618700 CTDSP1Q9GZU7 261 aa13.76□□□□□ -0.21
UPF3A-211ENST00000618700 TRBV6-4A0A1B0GX49 114 aa13.75□□□□□ -0.21
UPF3A-211ENST00000618700 PAX4O43316 350 aa13.75□□□□□ -0.21
UPF3A-211ENST00000618700 Q6ZSN1 163 aa13.75□□□□□ -0.21
UPF3A-211ENST00000618700 SLC25A29Q8N8R3 303 aa13.75□□□□□ -0.21
UPF3A-211ENST00000618700 A0A087WWC5 75 aa13.74□□□□□ -0.21
UPF3A-211ENST00000618700 C7orf77A4D0Y5 90 aa13.74□□□□□ -0.21
UPF3A-211ENST00000618700 EVI2AP22794 236 aa13.74□□□□□ -0.21
UPF3A-211ENST00000618700 SVBPQ8N300 66 aa13.74□□□□□ -0.21
UPF3A-211ENST00000618700 ALMS1Q8TCU4 4167 aa13.74□□□□□ -0.21
UPF3A-211ENST00000618700 KMT2CQ8NEZ4 4911 aaKnown RBP13.73□□□□□ -0.21
UPF3A-211ENST00000618700 SMIM17P0DL12 118 aa13.73□□□□□ -0.21
UPF3A-211ENST00000618700 RIGQ13278 110 aa13.73□□□□□ -0.21
UPF3A-211ENST00000618700 RHOHQ15669 191 aa13.73□□□□□ -0.21
UPF3A-211ENST00000618700 DPH3P1Q9H4G8 78 aa13.73□□□□□ -0.21
UPF3A-211ENST00000618700 K7EQD1 137 aa13.72□□□□□ -0.21
UPF3A-211ENST00000618700 RAB4BP61018 213 aa13.72□□□□□ -0.21
UPF3A-211ENST00000618700 IMMP2LQ96T52 175 aa13.72□□□□□ -0.21
UPF3A-211ENST00000618700 TMEM242Q9NWH2 141 aa13.72□□□□□ -0.21
UPF3A-211ENST00000618700 DNAH1Q9P2D7 4330 aa13.71□□□□□ -0.21
UPF3A-211ENST00000618700 A0A096LPF7 62 aa13.71□□□□□ -0.21
UPF3A-211ENST00000618700 A0A1B0GXF2 115 aa13.71□□□□□ -0.21
UPF3A-211ENST00000618700 FAM3BP58499 235 aaPredicted RBP13.71□□□□□ -0.21
UPF3A-211ENST00000618700 ZNF56Q15929 161 aa13.71□□□□□ -0.21
UPF3A-211ENST00000618700 PRADC1Q9BSG0 188 aa13.71□□□□□ -0.21
UPF3A-211ENST00000618700 ICOSQ9Y6W8 199 aa13.71□□□□□ -0.21
UPF3A-211ENST00000618700 LOC100131303A0A0U1RQF7 123 aa13.7□□□□□ -0.22
UPF3A-211ENST00000618700 A0A1B0GW15 77 aa13.7□□□□□ -0.22
UPF3A-211ENST00000618700 SNAPINO95295 136 aa13.7□□□□□ -0.22
UPF3A-211ENST00000618700 NUDT3O95989 172 aa13.7□□□□□ -0.22
UPF3A-211ENST00000618700 LYSTQ99698 3801 aa13.7□□□□□ -0.22
UPF3A-211ENST00000618700 RPS10P5Q9NQ39 176 aa13.7□□□□□ -0.22
UPF3A-211ENST00000618700 MGPP08493 103 aa13.69□□□□□ -0.22
UPF3A-211ENST00000618700 GYPEP15421 78 aa13.69□□□□□ -0.22
UPF3A-211ENST00000618700 SMIM15Q7Z3B0 74 aa13.69□□□□□ -0.22
UPF3A-211ENST00000618700 ATP5L2Q7Z4Y8 100 aa13.69□□□□□ -0.22
UPF3A-211ENST00000618700 TMEM191AQ9H0A3 160 aa13.69□□□□□ -0.22
UPF3A-211ENST00000618700 HBBP68871 147 aa13.68□□□□□ -0.22
UPF3A-211ENST00000618700 MRPL54Q6P161 138 aaKnown RBP13.68□□□□□ -0.22
UPF3A-211ENST00000618700 Q9UF83 564 aa13.68□□□□□ -0.22
UPF3A-211ENST00000618700 VPS13DQ5THJ4 4388 aa13.68□□□□□ -0.22
UPF3A-211ENST00000618700 TRBV10-1A0A0K0K1A3 114 aa13.67□□□□□ -0.22
UPF3A-211ENST00000618700 F5H697 171 aa13.67□□□□□ -0.22
UPF3A-211ENST00000618700 P0DMU3 169 aa13.67□□□□□ -0.22
UPF3A-211ENST00000618700 FAM231AP0DMU4 169 aa13.67□□□□□ -0.22
UPF3A-211ENST00000618700 FAM231CP0DMU5 169 aa13.67□□□□□ -0.22
UPF3A-211ENST00000618700 LINC00694P0DN24 101 aa13.67□□□□□ -0.22
UPF3A-211ENST00000618700 MRPL23Q16540 153 aaKnown RBP13.67□□□□□ -0.22
UPF3A-211ENST00000618700 SUMO4Q6EEV6 95 aa13.67□□□□□ -0.22
UPF3A-211ENST00000618700 GATD1Q8NB37 220 aa13.67□□□□□ -0.22
UPF3A-211ENST00000618700 BTF3L4Q96K17 158 aa13.67□□□□□ -0.22
UPF3A-211ENST00000618700 M0QY20 66 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms