RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 GAGE12GP0CL81 117 aa7.66□□□□□ -1.18
SS18-213ENST00000579640 GAGE12IP0CL82 117 aa7.66□□□□□ -1.18
SS18-213ENST00000579640 RAB4BP61018 213 aa7.66□□□□□ -1.18
SS18-213ENST00000579640 A0A0J9YWU9 116 aa7.65□□□□□ -1.18
SS18-213ENST00000579640 EVI2AP22794 236 aa7.65□□□□□ -1.18
SS18-213ENST00000579640 CFAP126Q5VTH2 177 aa7.65□□□□□ -1.18
SS18-213ENST00000579640 ZFP2Q6ZN57 461 aa7.65□□□□□ -1.18
SS18-213ENST00000579640 TMEM136Q6ZRR5 245 aa7.65□□□□□ -1.18
SS18-213ENST00000579640 C14orf178Q8N769 122 aaPredicted RBP7.65□□□□□ -1.18
SS18-213ENST00000579640 OR4C5Q8NGB2 326 aa7.65□□□□□ -1.18
SS18-213ENST00000579640 CRYGDP07320 174 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 DEFB130BP0DP73 79 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 DEFB130AP0DP74 79 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 RAB5AP20339 215 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 DAD1P61803 113 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 FAM104BQ5XKR9 115 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 FRZBQ92765 325 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 JPT2Q9H910 190 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 CELA1Q9UNI1 258 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 KIF25-AS1Q9Y6Z4 181 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 MEGF8Q7Z7M0 2845 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 POM121L12Q8N7R1 296 aa7.64□□□□□ -1.19
SS18-213ENST00000579640 A0A087WWL8 130 aa7.63□□□□□ -1.19
SS18-213ENST00000579640 RPS10P46783 165 aaKnown RBP7.63□□□□□ -1.19
SS18-213ENST00000579640 FAM74A4Q5TZK3 123 aa7.63□□□□□ -1.19
SS18-213ENST00000579640 UFSP1Q6NVU6 142 aa7.63□□□□□ -1.19
SS18-213ENST00000579640 AMN1Q8IY45 258 aa7.63□□□□□ -1.19
SS18-213ENST00000579640 SAMD10Q9BYL1 202 aa7.63□□□□□ -1.19
SS18-213ENST00000579640 TRAPPC1Q9Y5R8 145 aa7.63□□□□□ -1.19
SS18-213ENST00000579640 APCSP02743 223 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 MGPP08493 103 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 RAB4AP20338 218 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 LINC00315P59091 139 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 C11orf45Q8TAV5 145 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 RNF185Q96GF1 192 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 ZNF479Q96JC4 524 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 MRPL18Q9H0U6 180 aaKnown RBP7.62□□□□□ -1.19
SS18-213ENST00000579640 ATP5G1P05496 136 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 ZNF56Q15929 161 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 C12orf74Q32Q52 190 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 MRAP2Q96G30 205 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 U3KQK5 164 aa7.62□□□□□ -1.19
SS18-213ENST00000579640 F5H697 171 aa7.61□□□□□ -1.19
SS18-213ENST00000579640 PPBPP02775 128 aa7.61□□□□□ -1.19
SS18-213ENST00000579640 FABP9Q0Z7S8 132 aa7.61□□□□□ -1.19
SS18-213ENST00000579640 SLAQ13239 276 aa7.61□□□□□ -1.19
SS18-213ENST00000579640 MRPL51Q4U2R6 128 aaKnown RBP7.61□□□□□ -1.19
SS18-213ENST00000579640 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.61□□□□□ -1.19
SS18-213ENST00000579640 EDA2RQ9HAV5 297 aa7.61□□□□□ -1.19
SS18-213ENST00000579640 NACAE9PAV3 2078 aa7.61□□□□□ -1.19
SS18-213ENST00000579640 DNAH9Q9NYC9 4486 aa7.61□□□□□ -1.19
SS18-213ENST00000579640 IGHV3-73A0A0B4J1V6 119 aa7.6□□□□□ -1.19
SS18-213ENST00000579640 TRGV4A0A0C4DH28 118 aa7.6□□□□□ -1.19
SS18-213ENST00000579640 H7C1H1 209 aa7.6□□□□□ -1.19
SS18-213ENST00000579640 IGHV3-53P01767 116 aa7.6□□□□□ -1.19
SS18-213ENST00000579640 HUWE1Q7Z6Z7 4374 aaKnown RBP7.6□□□□□ -1.19
SS18-213ENST00000579640 PPP1R17O96001 155 aa7.59□□□□□ -1.19
SS18-213ENST00000579640 CKS2P33552 79 aa7.59□□□□□ -1.19
SS18-213ENST00000579640 FHL2Q14192 279 aa7.59□□□□□ -1.19
SS18-213ENST00000579640 SUMO4Q6EEV6 95 aa7.59□□□□□ -1.19
SS18-213ENST00000579640 ORMDL3Q8N138 153 aa7.59□□□□□ -1.19
SS18-213ENST00000579640 TENM3Q9P273 2699 aa7.59□□□□□ -1.19
SS18-213ENST00000579640 TRBV6-4A0A1B0GX49 114 aa7.59□□□□□ -1.19
SS18-213ENST00000579640 TRGC2P03986 189 aa7.59□□□□□ -1.19
SS18-213ENST00000579640 GATA1P15976 413 aaPredicted RBP7.59□□□□□ -1.19
SS18-213ENST00000579640 LAMTOR2Q9Y2Q5 125 aa7.59□□□□□ -1.19
SS18-213ENST00000579640 D6R8Y8 96 aa7.58□□□□□ -1.2
SS18-213ENST00000579640 M0QY20 66 aa7.58□□□□□ -1.2
SS18-213ENST00000579640 NANOS2P60321 138 aaKnown RBP7.58□□□□□ -1.2
SS18-213ENST00000579640 Q6ZTC4 211 aa7.58□□□□□ -1.2
SS18-213ENST00000579640 PRO0255Q9UI72 69 aa7.58□□□□□ -1.2
SS18-213ENST00000579640 TRBV10-1A0A0K0K1A3 114 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 K7EQD1 137 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 PHOX2AO14813 284 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 RHOHQ15669 191 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 KIAA1644Q3SXP7 199 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 HHLA3Q9XRX5 114 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 PRKDCP78527 4128 aaKnown RBP7.57□□□□□ -1.2
SS18-213ENST00000579640 TRAV26-2A0A0B4J265 109 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 F5H768 121 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 HOXA5P20719 270 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 Q6ZSN1 163 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 SLC25A29Q8N8R3 303 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 DNAJC30Q96LL9 226 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 PRELID3AQ96N28 172 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 PRADC1Q9BSG0 188 aa7.57□□□□□ -1.2
SS18-213ENST00000579640 TRAV10A0A0B4J240 114 aa7.56□□□□□ -1.2
SS18-213ENST00000579640 SMKR1H3BMG3 65 aa7.56□□□□□ -1.2
SS18-213ENST00000579640 NCR2O95944 276 aa7.56□□□□□ -1.2
SS18-213ENST00000579640 HTN3P15516 51 aa7.56□□□□□ -1.2
SS18-213ENST00000579640 CRYBA4P53673 196 aa7.56□□□□□ -1.2
SS18-213ENST00000579640 OR10J3Q5JRS4 329 aa7.56□□□□□ -1.2
SS18-213ENST00000579640 ALKBH7Q9BT30 221 aaPredicted RBP7.56□□□□□ -1.2
SS18-213ENST00000579640 NIT2Q9NQR4 276 aa7.56□□□□□ -1.2
SS18-213ENST00000579640 TRBV6-5A0A0K0K1A5 114 aa7.55□□□□□ -1.2
SS18-213ENST00000579640 C1orf196B1AJZ1 125 aa7.55□□□□□ -1.2
SS18-213ENST00000579640 SRIP30626 198 aa7.55□□□□□ -1.2
SS18-213ENST00000579640 NRACQ8N912 160 aa7.55□□□□□ -1.2
SS18-213ENST00000579640 DEFB131BA0A096LNP1 70 aa7.55□□□□□ -1.2
SS18-213ENST00000579640 PAX4O43316 350 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms