RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 GNLYP22749 145 aa12.81□□□□□ -0.36
VPS53-215ENST00000573028 ZNF56Q15929 161 aa12.81□□□□□ -0.36
VPS53-215ENST00000573028 OPRPNQ99935 248 aaPredicted RBP12.81□□□□□ -0.36
VPS53-215ENST00000573028 IGHV3-64A0A075B6Q5 118 aa12.8□□□□□ -0.36
VPS53-215ENST00000573028 PPP1R17O96001 155 aa12.8□□□□□ -0.36
VPS53-215ENST00000573028 IGHG2P01859 326 aa12.8□□□□□ -0.36
VPS53-215ENST00000573028 TMEM238LA0A1B0GVL6 79 aa12.8□□□□□ -0.36
VPS53-215ENST00000573028 A6NJY4 79 aa12.8□□□□□ -0.36
VPS53-215ENST00000573028 HERVK_113P61574 105 aa12.8□□□□□ -0.36
VPS53-215ENST00000573028 LINC00315P59091 139 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 ITPR1Q14643 2758 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 HTN1P15515 57 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 C10orf99Q6UWK7 81 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 MDFICQ9P1T7 246 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 IGLV4-69A0A075B6H9 119 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 PMVKQ15126 192 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 CLEC2AQ6UVW9 174 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 FAM19A4Q96LR4 140 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 ATP6V0BQ99437 205 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 PIMREGQ9BSJ6 248 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 KIF25-AS1Q9Y6Z4 181 aa12.79□□□□□ -0.36
VPS53-215ENST00000573028 VCYO14598 125 aa12.78□□□□□ -0.36
VPS53-215ENST00000573028 ID1P41134 155 aa12.78□□□□□ -0.36
VPS53-215ENST00000573028 PTH2Q96A98 100 aa12.78□□□□□ -0.36
VPS53-215ENST00000573028 POLQO75417 2590 aa12.78□□□□□ -0.36
VPS53-215ENST00000573028 TSPEAR-AS2P59090 65 aa12.77□□□□□ -0.36
VPS53-215ENST00000573028 PRO0461Q9UI25 63 aa12.77□□□□□ -0.36
VPS53-215ENST00000573028 NDUFS8O00217 210 aa12.77□□□□□ -0.37
VPS53-215ENST00000573028 TSPAN13O95857 204 aa12.77□□□□□ -0.37
VPS53-215ENST00000573028 MED14OSP0DP75 135 aa12.77□□□□□ -0.37
VPS53-215ENST00000573028 COX6B1P14854 86 aa12.77□□□□□ -0.37
VPS53-215ENST00000573028 CENPEQ02224 2701 aa12.77□□□□□ -0.37
VPS53-215ENST00000573028 IGIPA6NJ69 53 aa12.77□□□□□ -0.37
VPS53-215ENST00000573028 CRIP2P52943 208 aaPredicted RBP12.77□□□□□ -0.37
VPS53-215ENST00000573028 POLR2KP53803 58 aaKnown RBP12.76□□□□□ -0.37
VPS53-215ENST00000573028 ATP5J2P56134 94 aa12.76□□□□□ -0.37
VPS53-215ENST00000573028 DLX4Q92988 240 aaPredicted RBP12.76□□□□□ -0.37
VPS53-215ENST00000573028 DUX5Q96PT3 197 aa12.76□□□□□ -0.37
VPS53-215ENST00000573028 A6NDX4 124 aa12.76□□□□□ -0.37
VPS53-215ENST00000573028 KLLNB2CW77 178 aa12.76□□□□□ -0.37
VPS53-215ENST00000573028 H7C2G1 150 aa12.76□□□□□ -0.37
VPS53-215ENST00000573028 SPINK13Q1W4C9 94 aa12.76□□□□□ -0.37
VPS53-215ENST00000573028 CCL19Q99731 98 aa12.76□□□□□ -0.37
VPS53-215ENST00000573028 IGHV4-30-2A0A087WSY4 118 aa12.75□□□□□ -0.37
VPS53-215ENST00000573028 A0A0J9YY99 117 aa12.75□□□□□ -0.37
VPS53-215ENST00000573028 ZNRF2Q8NHG8 242 aa12.75□□□□□ -0.37
VPS53-215ENST00000573028 FLNCQ14315 2725 aa12.75□□□□□ -0.37
VPS53-215ENST00000573028 SCGB1C2P0DMR2 95 aa12.75□□□□□ -0.37
VPS53-215ENST00000573028 LINC01619G3V211 115 aa12.74□□□□□ -0.37
VPS53-215ENST00000573028 APRG1Q8IVJ8 170 aa12.74□□□□□ -0.37
VPS53-215ENST00000573028 DCANP1Q8TF63 244 aa12.74□□□□□ -0.37
VPS53-215ENST00000573028 IGHV4OR15-8A0A075B7B6 117 aa12.73□□□□□ -0.37
VPS53-215ENST00000573028 A0A087WW49 117 aa12.73□□□□□ -0.37
VPS53-215ENST00000573028 Q8N1Y9 231 aa12.73□□□□□ -0.37
VPS53-215ENST00000573028 IGHV3-73A0A0B4J1V6 119 aa12.73□□□□□ -0.37
VPS53-215ENST00000573028 AVPP01185 164 aa12.73□□□□□ -0.37
VPS53-215ENST00000573028 LGALS3P17931 250 aaKnown RBP12.73□□□□□ -0.37
VPS53-215ENST00000573028 UBE2D1P51668 147 aa12.73□□□□□ -0.37
VPS53-215ENST00000573028 NOTCH3Q9UM47 2321 aa12.73□□□□□ -0.37
VPS53-215ENST00000573028 SMCPP49901 116 aaPredicted RBP12.73□□□□□ -0.37
VPS53-215ENST00000573028 UTP20O75691 2785 aaKnown RBP12.73□□□□□ -0.37
VPS53-215ENST00000573028 PAPPA-AS1Q5QFB9 102 aa12.72□□□□□ -0.37
VPS53-215ENST00000573028 NDUFA11Q86Y39 141 aa12.72□□□□□ -0.37
VPS53-215ENST00000573028 CACNA1AO00555 2505 aa12.72□□□□□ -0.37
VPS53-215ENST00000573028 NXPH4O95158 308 aa12.72□□□□□ -0.37
VPS53-215ENST00000573028 RAX2Q96IS3 184 aa12.72□□□□□ -0.37
VPS53-215ENST00000573028 ZANQ9Y493 2812 aa12.72□□□□□ -0.37
VPS53-215ENST00000573028 H3BUA1 57 aa12.71□□□□□ -0.37
VPS53-215ENST00000573028 J3QQQ9 107 aa12.71□□□□□ -0.37
VPS53-215ENST00000573028 SYT8Q8NBV8 401 aa12.71□□□□□ -0.37
VPS53-215ENST00000573028 C10orf105Q8TEF2 133 aa12.71□□□□□ -0.37
VPS53-215ENST00000573028 IGLV1-40P01703 118 aa12.71□□□□□ -0.37
VPS53-215ENST00000573028 TMEM141Q96I45 108 aa12.71□□□□□ -0.37
VPS53-215ENST00000573028 MYO18BQ8IUG5 2567 aa12.71□□□□□ -0.37
VPS53-215ENST00000573028 USP9XQ93008 2570 aaPredicted RBP12.71□□□□□ -0.37
VPS53-215ENST00000573028 PKD1L2Q7Z442 2459 aa12.71□□□□□ -0.37
VPS53-215ENST00000573028 CFAP126Q5VTH2 177 aa12.71□□□□□ -0.38
VPS53-215ENST00000573028 ACACBO00763 2458 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 IGHV4-59P01825 116 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 MSMBP08118 114 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 SYNJ2BPP57105 145 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 ZNF876PQ49A33 203 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 FAM208BQ5VWN6 2430 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 TRAV2A0A0B4J234 112 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 IGHV3-16A0A0C4DH30 117 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 CFC1BP0CG36 223 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 CFC1P0CG37 223 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 FOXI1Q12951 378 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 NRGNQ92686 78 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 CSMD2Q7Z408 3487 aa12.7□□□□□ -0.38
VPS53-215ENST00000573028 TRBV7-9A0A0J9YWB2 115 aa12.69□□□□□ -0.38
VPS53-215ENST00000573028 SNRPD3P62318 126 aaKnown RBP12.69□□□□□ -0.38
VPS53-215ENST00000573028 NFE4Q86UQ8 179 aa12.69□□□□□ -0.38
VPS53-215ENST00000573028 TIMM17AQ99595 171 aa12.69□□□□□ -0.38
VPS53-215ENST00000573028 TCL1BO95988 128 aa12.69□□□□□ -0.38
VPS53-215ENST00000573028 ADARB2-AS1A8MUL3 147 aa12.69□□□□□ -0.38
VPS53-215ENST00000573028 C1QTNF4Q9BXJ3 329 aa12.69□□□□□ -0.38
VPS53-215ENST00000573028 MYO9AB2RTY4 2548 aa12.69□□□□□ -0.38
VPS53-215ENST00000573028 CFAP46Q8IYW2 2715 aa12.68□□□□□ -0.38
VPS53-215ENST00000573028 TRBV27A0A0K0K1C4 114 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms