RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 MAPKAPK5-AS1Q8N8E1 139 aa11.37□□□□□ -0.59
CLK3-210ENST00000563112 IBA57-AS1B1ANH7 110 aa11.36□□□□□ -0.59
CLK3-210ENST00000563112 FAM74A4Q5TZK3 123 aa11.36□□□□□ -0.59
CLK3-210ENST00000563112 EIF5AL1Q6IS14 154 aaKnown RBP11.36□□□□□ -0.59
CLK3-210ENST00000563112 ZFP82Q8N141 532 aa11.36□□□□□ -0.59
CLK3-210ENST00000563112 SFRP2Q96HF1 295 aa11.36□□□□□ -0.59
CLK3-210ENST00000563112 SAMD10Q9BYL1 202 aa11.36□□□□□ -0.59
CLK3-210ENST00000563112 HSPG2P98160 4391 aa11.36□□□□□ -0.59
CLK3-210ENST00000563112 ABCA13Q86UQ4 5058 aa11.36□□□□□ -0.59
CLK3-210ENST00000563112 SCO2A0A1W2PP80 73 aa11.35□□□□□ -0.59
CLK3-210ENST00000563112 M0R381 172 aa11.35□□□□□ -0.59
CLK3-210ENST00000563112 IGHV3-30P01768 117 aa11.35□□□□□ -0.59
CLK3-210ENST00000563112 IGHV3-33P01772 117 aa11.35□□□□□ -0.59
CLK3-210ENST00000563112 IGHV3-30-3P0DP02 117 aa11.35□□□□□ -0.59
CLK3-210ENST00000563112 IGHV3-30-5P0DP03 117 aa11.35□□□□□ -0.59
CLK3-210ENST00000563112 UFSP1Q6NVU6 142 aa11.35□□□□□ -0.59
CLK3-210ENST00000563112 BAGE2Q86Y30 109 aa11.35□□□□□ -0.59
CLK3-210ENST00000563112 SCRT2Q9NQ03 307 aa11.35□□□□□ -0.59
CLK3-210ENST00000563112 A0A087WWC5 75 aa11.34□□□□□ -0.59
CLK3-210ENST00000563112 TEX46H3BTG2 121 aa11.34□□□□□ -0.59
CLK3-210ENST00000563112 RAB5CP51148 216 aa11.34□□□□□ -0.59
CLK3-210ENST00000563112 RAB14P61106 215 aa11.34□□□□□ -0.59
CLK3-210ENST00000563112 C14orf178Q8N769 122 aaPredicted RBP11.34□□□□□ -0.59
CLK3-210ENST00000563112 MANBALQ9NQG1 85 aa11.34□□□□□ -0.59
CLK3-210ENST00000563112 APOBP04114 4563 aaKnown RBP11.33□□□□□ -0.6
CLK3-210ENST00000563112 A0A087WWL8 130 aa11.33□□□□□ -0.6
CLK3-210ENST00000563112 LINC00694P0DN24 101 aa11.33□□□□□ -0.6
CLK3-210ENST00000563112 Q9HAA7 133 aa11.33□□□□□ -0.6
CLK3-210ENST00000563112 CXCL1P09341 107 aa11.32□□□□□ -0.6
CLK3-210ENST00000563112 IFITM2Q01629 132 aa11.32□□□□□ -0.6
CLK3-210ENST00000563112 C9orf62Q8N4C0 152 aa11.32□□□□□ -0.6
CLK3-210ENST00000563112 MLST8Q9BVC4 326 aa11.32□□□□□ -0.6
CLK3-210ENST00000563112 GNG13Q9P2W3 67 aa11.32□□□□□ -0.6
CLK3-210ENST00000563112 TRAV1-1A0A0B4J248 108 aa11.31□□□□□ -0.6
CLK3-210ENST00000563112 FUSP35637 526 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLK3-210ENST00000563112 LAGE3Q14657 143 aa11.31□□□□□ -0.6
CLK3-210ENST00000563112 PRR27Q6MZM9 219 aa11.31□□□□□ -0.6
CLK3-210ENST00000563112 Q8N1X5 172 aa11.31□□□□□ -0.6
CLK3-210ENST00000563112 KRTAP4-5Q9BYR2 181 aa11.31□□□□□ -0.6
CLK3-210ENST00000563112 RPL35P42766 123 aaKnown RBP11.3□□□□□ -0.6
CLK3-210ENST00000563112 RPL19P84098 196 aaKnown RBP11.3□□□□□ -0.6
CLK3-210ENST00000563112 TOR2AQ5JU69 321 aa11.3□□□□□ -0.6
CLK3-210ENST00000563112 TM2D2Q9BX73 214 aa11.3□□□□□ -0.6
CLK3-210ENST00000563112 Q9UF83 564 aa11.3□□□□□ -0.6
CLK3-210ENST00000563112 TRBV10-1A0A0K0K1A3 114 aa11.29□□□□□ -0.6
CLK3-210ENST00000563112 CCL20P78556 96 aa11.29□□□□□ -0.6
CLK3-210ENST00000563112 RPL36AP83881 106 aaKnown RBP11.29□□□□□ -0.6
CLK3-210ENST00000563112 RPL36ALQ969Q0 106 aaKnown RBP11.29□□□□□ -0.6
CLK3-210ENST00000563112 URGCP-MRPS24S4R325 110 aa11.29□□□□□ -0.6
CLK3-210ENST00000563112 TRAV8-3A0A0A6YYJ7 113 aa11.28□□□□□ -0.6
CLK3-210ENST00000563112 SULT1A2P50226 295 aa11.28□□□□□ -0.6
CLK3-210ENST00000563112 SPANXN1Q5VSR9 72 aa11.28□□□□□ -0.6
CLK3-210ENST00000563112 OR10AG1Q8NH19 301 aa11.28□□□□□ -0.6
CLK3-210ENST00000563112 C11orf52Q96A22 123 aa11.28□□□□□ -0.6
CLK3-210ENST00000563112 LRCOL1A6NCL2 159 aa11.27□□□□□ -0.61
CLK3-210ENST00000563112 IFNA1P01562 189 aa11.27□□□□□ -0.61
CLK3-210ENST00000563112 GCSHP23434 173 aa11.27□□□□□ -0.61
CLK3-210ENST00000563112 RAB4BP61018 213 aa11.27□□□□□ -0.61
CLK3-210ENST00000563112 TRBV7-3A0A075B6L6 115 aa11.26□□□□□ -0.61
CLK3-210ENST00000563112 IGLV5-52A0A0A0MRZ9 124 aa11.26□□□□□ -0.61
CLK3-210ENST00000563112 SNAI2O43623 268 aa11.26□□□□□ -0.61
CLK3-210ENST00000563112 OR5AL1P0C617 328 aa11.26□□□□□ -0.61
CLK3-210ENST00000563112 ZNF56Q15929 161 aa11.26□□□□□ -0.61
CLK3-210ENST00000563112 KCNIP4Q6PIL6 250 aa11.26□□□□□ -0.61
CLK3-210ENST00000563112 TEX261Q6UWH6 196 aa11.26□□□□□ -0.61
CLK3-210ENST00000563112 DAZ4Q86SG3 579 aaKnown RBP11.26□□□□□ -0.61
CLK3-210ENST00000563112 SLC51BQ86UW2 128 aa11.26□□□□□ -0.61
CLK3-210ENST00000563112 NTN5Q8WTR8 489 aaPredicted RBP11.26□□□□□ -0.61
CLK3-210ENST00000563112 DAZAP1Q96EP5 407 aaKnown RBP11.26□□□□□ -0.61
CLK3-210ENST00000563112 DERL1Q9BUN8 251 aa11.26□□□□□ -0.61
CLK3-210ENST00000563112 SSBP4Q9BWG4 385 aaPredicted RBP11.26□□□□□ -0.61
CLK3-210ENST00000563112 DAZ3Q9NR90 486 aaKnown RBP11.26□□□□□ -0.61
CLK3-210ENST00000563112 CENPWQ5EE01 88 aa11.25□□□□□ -0.61
CLK3-210ENST00000563112 Q8N3U1 123 aa11.25□□□□□ -0.61
CLK3-210ENST00000563112 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.25□□□□□ -0.61
CLK3-210ENST00000563112 F5H697 171 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 PDE6DO43924 150 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 SMIM17P0DL12 118 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 GNG4P50150 75 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 KRTAP10-1P60331 282 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 RPS20P60866 119 aaKnown RBP11.24□□□□□ -0.61
CLK3-210ENST00000563112 UBE2D3P61077 147 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 UBE2D2P62837 147 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 MEF2BQ02080 365 aaPredicted RBP11.24□□□□□ -0.61
CLK3-210ENST00000563112 NIT1Q86X76 327 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 Q8N814 137 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 OR10G8Q8NGN5 311 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 RMI2Q96E14 147 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 COX11Q9Y6N1 276 aa11.24□□□□□ -0.61
CLK3-210ENST00000563112 A0A087WX48 190 aa11.23□□□□□ -0.61
CLK3-210ENST00000563112 MUC21A0A0G2JKD1 596 aa11.23□□□□□ -0.61
CLK3-210ENST00000563112 MUC21A0A140T8X8 626 aa11.23□□□□□ -0.61
CLK3-210ENST00000563112 SSTP61278 116 aa11.23□□□□□ -0.61
CLK3-210ENST00000563112 ELOBQ15370 118 aa11.23□□□□□ -0.61
CLK3-210ENST00000563112 SMIM12Q96EX1 92 aa11.23□□□□□ -0.61
CLK3-210ENST00000563112 CHCHD7Q9BUK0 85 aa11.23□□□□□ -0.61
CLK3-210ENST00000563112 MED9Q9NWA0 146 aa11.23□□□□□ -0.61
CLK3-210ENST00000563112 RAB19A4D1S5 217 aa11.22□□□□□ -0.61
CLK3-210ENST00000563112 CLLU1Q5K131 121 aa11.22□□□□□ -0.61
CLK3-210ENST00000563112 OR2D3Q8NGH3 330 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 150.2 ms