RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PLEKHB2Q96CS7 222 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 GTSF1LQ9H1H1 148 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 LINC00527Q9UJ94 153 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 TSPAN13O95857 204 aa10.28□□□□□ -0.76
VPS33A-208ENST00000543633 IGLV1-40P01703 118 aa10.28□□□□□ -0.76
VPS33A-208ENST00000543633 RHOHQ15669 191 aa10.28□□□□□ -0.76
VPS33A-208ENST00000543633 USP9XQ93008 2570 aaPredicted RBP10.28□□□□□ -0.76
VPS33A-208ENST00000543633 TACC2O95359 2948 aa10.28□□□□□ -0.76
VPS33A-208ENST00000543633 TRBV20-1A0A075B6N2 111 aa10.28□□□□□ -0.76
VPS33A-208ENST00000543633 APOMO95445 188 aa10.28□□□□□ -0.76
VPS33A-208ENST00000543633 RPL11P62913 178 aaKnown RBP10.28□□□□□ -0.76
VPS33A-208ENST00000543633 VCX2Q9H322 139 aa10.28□□□□□ -0.76
VPS33A-208ENST00000543633 DOPEY1Q5JWR5 2465 aa10.27□□□□□ -0.77
VPS33A-208ENST00000543633 UBR5O95071 2799 aaPredicted RBP10.27□□□□□ -0.77
VPS33A-208ENST00000543633 F6UB75 175 aa10.27□□□□□ -0.77
VPS33A-208ENST00000543633 SPRY2O43597 315 aa10.27□□□□□ -0.77
VPS33A-208ENST00000543633 NSUN5P1Q3KNT7 163 aa10.27□□□□□ -0.77
VPS33A-208ENST00000543633 ZNF876PQ49A33 203 aa10.27□□□□□ -0.77
VPS33A-208ENST00000543633 NFE4Q86UQ8 179 aa10.27□□□□□ -0.77
VPS33A-208ENST00000543633 SVIPQ8NHG7 77 aa10.27□□□□□ -0.77
VPS33A-208ENST00000543633 C9orf85Q96MD7 179 aa10.27□□□□□ -0.77
VPS33A-208ENST00000543633 KMT2BQ9UMN6 2715 aaPredicted RBP10.26□□□□□ -0.77
VPS33A-208ENST00000543633 PF4V1P10720 104 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 FOXI1Q12951 378 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 NDUFA11Q86Y39 141 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 SLC25A29Q8N8R3 303 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 PIMREGQ9BSJ6 248 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 A0A1B0GV72 72 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 IGHV4-39P01824 125 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 DEFB1P60022 68 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 CFHR3Q02985 330 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 SMAGPQ0VAQ4 97 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 TCTEX1D4Q5JR98 221 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 SYT8Q8NBV8 401 aa10.26□□□□□ -0.77
VPS33A-208ENST00000543633 MUC4Q99102 2169 aa10.25□□□□□ -0.77
VPS33A-208ENST00000543633 SDHAF1A6NFY7 115 aa10.25□□□□□ -0.77
VPS33A-208ENST00000543633 IGHV3-30P01768 117 aa10.25□□□□□ -0.77
VPS33A-208ENST00000543633 IGHV3-30-5P0DP03 117 aa10.25□□□□□ -0.77
VPS33A-208ENST00000543633 SBSPONQ8IVN8 264 aa10.25□□□□□ -0.77
VPS33A-208ENST00000543633 DCANP1Q8TF63 244 aa10.25□□□□□ -0.77
VPS33A-208ENST00000543633 MYO18BQ8IUG5 2567 aa10.25□□□□□ -0.77
VPS33A-208ENST00000543633 IGHV3-11P01762 117 aa10.24□□□□□ -0.77
VPS33A-208ENST00000543633 BRD3OSQ6XYD6 125 aa10.24□□□□□ -0.77
VPS33A-208ENST00000543633 M0QXV9 152 aa10.24□□□□□ -0.77
VPS33A-208ENST00000543633 SMCPP49901 116 aaPredicted RBP10.24□□□□□ -0.77
VPS33A-208ENST00000543633 C10orf126Q8N4M7 172 aa10.24□□□□□ -0.77
VPS33A-208ENST00000543633 IGHV3OR16-10A0A075B7F0 116 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 IGHV3-16A0A0C4DH30 117 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 H3BUX3 64 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 KLHL30-AS1Q8NEE0 82 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 PPDPFLQ8WWR9 84 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 AMELXQ99217 191 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 LOC107984156A0A0G2JMH3 177 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 TMEM89A2RUT3 159 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 J3QQQ9 107 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 LEPROTO15243 131 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 RPL39P62891 51 aaKnown RBP10.23□□□□□ -0.77
VPS33A-208ENST00000543633 TRPT1Q86TN4 253 aaKnown RBP10.23□□□□□ -0.77
VPS33A-208ENST00000543633 ARL17AQ8IVW1 177 aa10.23□□□□□ -0.77
VPS33A-208ENST00000543633 A0A0J9YX75 114 aa10.22□□□□□ -0.77
VPS33A-208ENST00000543633 F5H697 171 aa10.22□□□□□ -0.77
VPS33A-208ENST00000543633 LGALS3P17931 250 aaKnown RBP10.22□□□□□ -0.77
VPS33A-208ENST00000543633 PSMB2P49721 201 aa10.22□□□□□ -0.77
VPS33A-208ENST00000543633 TSPEAR-AS2P59090 65 aa10.22□□□□□ -0.77
VPS33A-208ENST00000543633 TMEM170BQ5T4T1 132 aa10.22□□□□□ -0.77
VPS33A-208ENST00000543633 TEN1Q86WV5 123 aa10.22□□□□□ -0.77
VPS33A-208ENST00000543633 MTURNQ8N3F0 131 aa10.22□□□□□ -0.77
VPS33A-208ENST00000543633 RNF152Q8N8N0 203 aa10.22□□□□□ -0.77
VPS33A-208ENST00000543633 MDFICQ9P1T7 246 aa10.22□□□□□ -0.77
VPS33A-208ENST00000543633 SPTAN1Q13813 2472 aaKnown RBP10.21□□□□□ -0.77
VPS33A-208ENST00000543633 CFC1BP0CG36 223 aa10.21□□□□□ -0.77
VPS33A-208ENST00000543633 CFC1P0CG37 223 aa10.21□□□□□ -0.77
VPS33A-208ENST00000543633 INSL3P51460 131 aa10.21□□□□□ -0.77
VPS33A-208ENST00000543633 LY6EQ16553 131 aa10.21□□□□□ -0.77
VPS33A-208ENST00000543633 CLEC2AQ6UVW9 174 aa10.21□□□□□ -0.77
VPS33A-208ENST00000543633 ZNRF2Q8NHG8 242 aa10.21□□□□□ -0.77
VPS33A-208ENST00000543633 C10orf105Q8TEF2 133 aa10.21□□□□□ -0.77
VPS33A-208ENST00000543633 EDA2RQ9HAV5 297 aa10.21□□□□□ -0.77
VPS33A-208ENST00000543633 ZNF256Q9Y2P7 627 aaPredicted RBP10.21□□□□□ -0.77
VPS33A-208ENST00000543633 CHD6Q8TD26 2715 aa10.21□□□□□ -0.78
VPS33A-208ENST00000543633 IGHV4-61A0A0C4DH41 118 aa10.21□□□□□ -0.78
VPS33A-208ENST00000543633 M0QY20 66 aa10.21□□□□□ -0.78
VPS33A-208ENST00000543633 IGHV4-38-2P0DP08 117 aa10.21□□□□□ -0.78
VPS33A-208ENST00000543633 JPT2Q9H910 190 aa10.21□□□□□ -0.78
VPS33A-208ENST00000543633 PRO1854Q9UHT4 67 aa10.21□□□□□ -0.78
VPS33A-208ENST00000543633 UTP20O75691 2785 aaKnown RBP10.21□□□□□ -0.78
VPS33A-208ENST00000543633 A0A087WWL8 130 aa10.2□□□□□ -0.78
VPS33A-208ENST00000543633 TRAV12-3A0A0B4J271 114 aa10.2□□□□□ -0.78
VPS33A-208ENST00000543633 A0A0B4J2C4 111 aa10.2□□□□□ -0.78
VPS33A-208ENST00000543633 TMEM223A0PJW6 202 aa10.2□□□□□ -0.78
VPS33A-208ENST00000543633 IGKV3-7A0A075B6H7 116 aa10.19□□□□□ -0.78
VPS33A-208ENST00000543633 SNRPD3P62318 126 aaKnown RBP10.19□□□□□ -0.78
VPS33A-208ENST00000543633 ABCA2Q9BZC7 2435 aa10.19□□□□□ -0.78
VPS33A-208ENST00000543633 IGHV1OR15-1A0A075B7D0 117 aa10.19□□□□□ -0.78
VPS33A-208ENST00000543633 A8MWV9 139 aa10.19□□□□□ -0.78
VPS33A-208ENST00000543633 TCL1BO95988 128 aa10.19□□□□□ -0.78
VPS33A-208ENST00000543633 CRYBA4P53673 196 aa10.19□□□□□ -0.78
VPS33A-208ENST00000543633 ZNF56Q15929 161 aa10.19□□□□□ -0.78
VPS33A-208ENST00000543633 Q6ZS46 218 aa10.19□□□□□ -0.78
VPS33A-208ENST00000543633 CDIP1Q9H305 208 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms