RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 GSKIPQ9P0R6 139 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 NDUFA12Q9UI09 145 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 SPTBP11277 2137 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 DAPK1P53355 1430 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 MYOM3Q5VTT5 1437 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 PXDNQ92626 1479 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 SYNE1Q8NF91 8797 aaKnown RBP0.01□□□□□ -2.41
VPS13A-213ENST00000539950 RBBP6Q7Z6E9 1792 aaKnown RBP0.01□□□□□ -2.41
VPS13A-213ENST00000539950 VIRMAQ69YN4 1812 aaKnown RBP0.01□□□□□ -2.41
VPS13A-213ENST00000539950 PLXNA1Q9UIW2 1896 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 JMJD1CQ15652 2540 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 TRAV12-3A0A0B4J271 114 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 TCRBV3S1A0A5B6 114 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 CLPSL1A2RUU4 121 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 ZNF670-ZNF695F2Z2N8 137 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 LINC00694P0DN24 101 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 CKS1BP61024 79 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 SPANXN1Q5VSR9 72 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 CYP2G1PQ6ZSU1 146 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 CTAGE3PQ8IX95 158 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 SMIM11BQ8TCY0 68 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 PAIP2BQ9ULR5 123 aaKnown RBP0.01□□□□□ -2.41
VPS13A-213ENST00000539950 MACF1Q9UPN3 7388 aaKnown RBP0.01□□□□□ -2.41
VPS13A-213ENST00000539950 TNS1Q9HBL0 1735 aaKnown RBP0.01□□□□□ -2.41
VPS13A-213ENST00000539950 ABCA4P78363 2273 aa0.01□□□□□ -2.41
VPS13A-213ENST00000539950 NPFFO15130 113 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 LRRC37A3O60309 1634 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 UBE2D1P51668 147 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 GRIN2AQ12879 1464 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 SPCS2Q15005 226 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 SMIM21Q3B7S5 101 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 C9orf116Q5BN46 136 aaPredicted RBP0□□□□□ -2.41
VPS13A-213ENST00000539950 MIC13Q5XKP0 118 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 SLC48A1Q6P1K1 146 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 Q6ZUT4 128 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 BCL9LQ86UU0 1499 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 NINQ8N4C6 2090 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 COX7B2Q8TF08 81 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 ANP32BQ92688 251 aaKnown RBP0□□□□□ -2.41
VPS13A-213ENST00000539950 SDF2Q99470 211 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 PRR15LQ9BU68 103 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 KIF13AQ9H1H9 1805 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 TMEM242Q9NWH2 141 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 AKAP11Q9UKA4 1901 aa0□□□□□ -2.41
VPS13A-213ENST00000539950 PIEZO1Q92508 2521 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 TTC28Q96AY4 2481 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 CACNA1HO95180 2353 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 MUC22E2RYF6 1773 aaPredicted RBP-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 SIPA1L3O60292 1781 aaPredicted RBP-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 IFT140Q96RY7 1462 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 IBTKQ9P2D0 1353 aaPredicted RBP-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 F2Z2F3 143 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 J3QR89 54 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 PIRTP0C851 137 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 COX4I1P13073 169 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 GUCA1AP43080 201 aaPredicted RBP-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 RPS25P62851 125 aaKnown RBP-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 INSL4Q14641 139 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 ZNF818PQ6ZRF7 136 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 C4orf33Q8N1A6 199 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 C20orf197Q8N268 126 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 MAFIPQ8WZ33 124 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 WFDC6Q9BQY6 131 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 TMEM191AQ9H0A3 160 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 TPT1P8Q9HAU6 139 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 COPZ2Q9P299 210 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 TPRP12270 2363 aaKnown RBP-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 PHIPQ8WWQ0 1821 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 NRXN2Q9P2S2 1712 aa-0.01□□□□□ -2.41
VPS13A-213ENST00000539950 BICRAQ9NZM4 1560 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 GOLGA3Q08378 1498 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 ABCA12Q86UK0 2595 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 TRBV7-1A0A0A6YYK4 115 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 SPAARA0A1B0GVQ0 90 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 TMEM14DPA8MWL7 114 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 M0R2Z0 102 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 IFNA17P01571 189 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 TFF1P04155 84 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 RRAS2P62070 204 aaPredicted RBP-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 CCL8P80075 99 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 Q5BKY6 102 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 FAM74A4Q5TZK3 123 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 TCEAL4Q96EI5 215 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 DPH3Q96FX2 82 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 SMIM3Q9BZL3 60 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 SCP2D1Q9UJQ7 156 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 V9GYV3 84 aa-0.02□□□□□ -2.41
VPS13A-213ENST00000539950 ZMYM4Q5VZL5 1548 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 LRP1Q07954 4544 aaKnown RBP-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 ZNF518AQ6AHZ1 1483 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 DMBT1Q9UGM3 2413 aaPredicted RBP-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 ABCA1O95477 2261 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 POLQO75417 2590 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 G3V318 75 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 APODP05090 189 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 NMBP08949 121 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 CBLN1P23435 193 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 EDDM3BP56851 147 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 SMCO1Q147U7 214 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 Q6ZRX8 168 aa-0.03□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms