RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 OTORQ9NRC9 128 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 NAT8Q9UHE5 227 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 LAMTOR2Q9Y2Q5 125 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 IGKV3-7A0A075B6H7 116 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 TRAV8-1A0A0A6YYK1 113 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 IGHV7-4-1A0A0J9YVY3 117 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 ZNF705FA8MVS1 300 aaPredicted RBP3.11□□□□□ -1.91
CD44-226ENST00000527889 ISLRO14498 428 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 CCL25O15444 150 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 CRLF1O75462 422 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 OR5AL1P0C617 328 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 RAB5AP20339 215 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 GALR1P47211 349 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 SYNJ2BPP57105 145 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 SRSF9Q13242 221 aaKnown RBP eCLIP3.11□□□□□ -1.91
CD44-226ENST00000527889 FAM106AQ4KMX7 169 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 PYY3Q5JQD4 70 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 GOLT1AQ6ZVE7 132 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 GPHB5Q86YW7 130 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 C5orf17Q8NAS9 161 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 TMEM158Q8WZ71 300 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 UBE2E2Q96LR5 201 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 IGF2BP2-AS1Q96M15 143 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 C16orf95Q9H693 158 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 EPDR1Q9UM22 224 aa3.11□□□□□ -1.91
CD44-226ENST00000527889 IGKV2-40A0A087WW87 121 aaPredicted RBP3.1□□□□□ -1.91
CD44-226ENST00000527889 A0A087WX48 190 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 LOC102724200A0A096LPH7 203 aaPredicted RBP3.1□□□□□ -1.91
CD44-226ENST00000527889 TRAV8-2A0A0B4J237 113 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 A0A0U1RQV1 116 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 FAM240AA0A1B0GVK7 77 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 A0A1W2PS18 150 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 C2orf70A6NJV1 201 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 C9JCJ5 164 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 PRAC2D3DTV9 90 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 LINC01619G3V211 115 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 TSHBP01222 138 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 IGKV2D-40P01614 121 aaPredicted RBP3.1□□□□□ -1.91
CD44-226ENST00000527889 IGLV2-8P01709 118 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 TCRAP04437 139 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 MGST1P10620 155 aaKnown RBP3.1□□□□□ -1.91
CD44-226ENST00000527889 EVI2AP22794 236 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 DEFB1P60022 68 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 KRTAP10-3P60369 221 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 ERVFC1-1P60608 527 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 UBE2G1P62253 170 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 PSG9Q00887 426 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 PDE6HQ13956 83 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 BATFQ16520 125 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 NSUN5P1Q3KNT7 163 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 PRNTQ86SH4 94 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 Q86TA4 180 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 OR1N2Q8NGR9 330 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 CMTM2Q8TAZ6 248 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 C4orf3Q8WVX3 66 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 RHPN1-AS1Q9BWJ2 59 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 PRO1933Q9H354 126 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 ZNF331Q9NQX6 463 aaPredicted RBP3.1□□□□□ -1.91
CD44-226ENST00000527889 DAZ1Q9NQZ3 744 aaKnown RBP3.1□□□□□ -1.91
CD44-226ENST00000527889 Q9UF83 564 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 NAT8BQ9UHF3 227 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 TENM3Q9P273 2699 aa3.1□□□□□ -1.91
CD44-226ENST00000527889 A0A087WWC5 75 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 A0A087WZ39 114 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 FABP5P3A8MUU1 101 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 B4DEV8 164 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 H7BYZ3 331 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 K7EMT4 169 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 ZNF253O75346 499 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 NDUFC2O95298 119 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 IGLV2-11P01706 119 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 AMBPP02760 352 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 MT-ND4LP03901 98 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 NTF3P20783 257 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 CSN1S1P47710 185 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 TFPI2P48307 235 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 RPS28P62857 69 aaKnown RBP3.09□□□□□ -1.91
CD44-226ENST00000527889 HIST1H1AQ02539 215 aaPredicted RBP3.09□□□□□ -1.91
CD44-226ENST00000527889 RPL18AQ02543 176 aaKnown RBP3.09□□□□□ -1.91
CD44-226ENST00000527889 ERCC8Q13216 396 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 TMEM183BQ1AE95 376 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 LCN12Q6JVE5 192 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 BAGE2Q86Y30 109 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 LYPD1Q8N2G4 141 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.09□□□□□ -1.91
CD44-226ENST00000527889 C15orf54Q8N8G6 183 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 TMEM75Q8N9X5 138 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 Q8TAT8 98 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 DLX4Q92988 240 aaPredicted RBP3.09□□□□□ -1.91
CD44-226ENST00000527889 FMC1Q96HJ9 113 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 VGLL1Q99990 258 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 SLC50A1Q9BRV3 221 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 NDFIP1Q9BT67 221 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 RNASE7Q9H1E1 156 aaKnown RBP3.09□□□□□ -1.91
CD44-226ENST00000527889 SMCO4Q9NRQ5 59 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 PKIGQ9Y2B9 76 aa3.09□□□□□ -1.91
CD44-226ENST00000527889 COLCA2A8K830 154 aa3.08□□□□□ -1.92
CD44-226ENST00000527889 F6UB75 175 aa3.08□□□□□ -1.92
CD44-226ENST00000527889 SMKR1H3BMG3 65 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms