RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 FAM159AQ6UWV7 190 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 C9orf139Q6ZV77 190 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 MYOZ3Q8TDC0 251 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 MEIG1Q5JSS6 88 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 CEND1Q8N111 149 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 ATP5L2Q7Z4Y8 100 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 MAPKAPK5-AS1Q8N8E1 139 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 IGKV2-40A0A087WW87 121 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 GAGE12JA6NER3 117 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 GAGE7O76087 117 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 IGKV2D-40P01614 121 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 PRSS2P07478 247 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 GAGE12FP0CL80 117 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 GAGE12GP0CL81 117 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 GAGE12IP0CL82 117 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 SLURP1P55000 103 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 GAGE4Q13068 117 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 IGKV1-17P01599 117 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 PATE2Q6UY27 113 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 CCDC140Q96MF4 163 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 MAP1LC3AQ9H492 121 aa6.63□□□□□ -1.35
LIMCH1-209ENST00000509277 ZNF815PA8K554 130 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 CRYGCP07315 174 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 EDN2P20800 178 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 FAM167A-AS1Q96KT0 104 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 TRAV12-3A0A0B4J271 114 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 ZNF785A8K8V0 405 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 A8MWV9 139 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 DPM2O94777 84 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 UNQ9165/PRO28630Q6UXU0 137 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 NFE4Q86UQ8 179 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 DLX4Q92988 240 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 RNF125Q96EQ8 232 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 HIGD1AQ9Y241 93 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 PRSS46E5RG02 174 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 CRXO43186 299 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 PF4P02776 101 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 IGF1P05019 195 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 RNASE1P07998 156 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 SCGB1A1P11684 91 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 MRPL51Q4U2R6 128 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 FXYD5Q96DB9 178 aa6.62□□□□□ -1.35
LIMCH1-209ENST00000509277 IGHV4OR15-8A0A075B7B6 117 aa6.61□□□□□ -1.35
LIMCH1-209ENST00000509277 A0A087WW49 117 aa6.61□□□□□ -1.35
LIMCH1-209ENST00000509277 CTSGP08311 255 aa6.61□□□□□ -1.35
LIMCH1-209ENST00000509277 SMPXQ9UHP9 88 aa6.61□□□□□ -1.35
LIMCH1-209ENST00000509277 IGKV1D-37A0A075B6S9 117 aa6.61□□□□□ -1.35
LIMCH1-209ENST00000509277 A0A1B0GXF2 115 aa6.61□□□□□ -1.35
LIMCH1-209ENST00000509277 MGPP08493 103 aa6.61□□□□□ -1.35
LIMCH1-209ENST00000509277 RASL11AQ6T310 242 aa6.61□□□□□ -1.35
LIMCH1-209ENST00000509277 TRAV4A0A0B4J268 109 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 RRN3P1Q2M238 152 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 TCTEX1D4Q5JR98 221 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 Q6ZQT7 251 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 WIPF2Q8TF74 440 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 M0QXV9 152 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 TMEM170BQ5T4T1 132 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 ERG28Q9UKR5 140 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 TSPAN13O95857 204 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 IGHG4P01861 327 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 Q86TA4 180 aa6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 NTN5Q8WTR8 489 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 MRPL32Q9BYC8 188 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-209ENST00000509277 TRBV7-1A0A0A6YYK4 115 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 FAM223BA6NKX1 122 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 LGALS9BQ3B8N2 356 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 LGALS9CQ6DKI2 356 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 TRPT1Q86TN4 253 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 FAM223AQ8IWN6 122 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 TMEM86BQ8N661 226 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 METTL26Q96S19 204 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 PPDPFQ9H3Y8 114 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 ANK3Q12955 4377 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 NOTCH1P46531 2555 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 CLPSL1A2RUU4 121 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 TMEM262E9PQX1 116 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 M0R381 172 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 PSMB8P28062 276 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 HOXD3P31249 432 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 ATP5IP56385 69 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 ZNF56Q15929 161 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 FAM231DQ6ZW35 169 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 ANKRD29Q8N6D5 301 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 SPATA25Q9BR10 227 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 CHCHD5Q9BSY4 110 aa6.59□□□□□ -1.35
LIMCH1-209ENST00000509277 A0A0U1RRA0 63 aa6.59□□□□□ -1.36
LIMCH1-209ENST00000509277 HERVK_113P61574 105 aa6.59□□□□□ -1.36
LIMCH1-209ENST00000509277 FHL3Q13643 280 aa6.59□□□□□ -1.36
LIMCH1-209ENST00000509277 SPANXN1Q5VSR9 72 aa6.59□□□□□ -1.36
LIMCH1-209ENST00000509277 ZNF491Q8N8L2 437 aa6.59□□□□□ -1.36
LIMCH1-209ENST00000509277 DYNLRB2Q8TF09 96 aa6.59□□□□□ -1.36
LIMCH1-209ENST00000509277 FMC1Q96HJ9 113 aa6.59□□□□□ -1.36
LIMCH1-209ENST00000509277 USMG5Q96IX5 58 aa6.59□□□□□ -1.36
LIMCH1-209ENST00000509277 TRGV9Q99603 122 aa6.59□□□□□ -1.36
LIMCH1-209ENST00000509277 IGKV3-20P01619 116 aa6.58□□□□□ -1.36
LIMCH1-209ENST00000509277 ELANEP08246 267 aa6.58□□□□□ -1.36
LIMCH1-209ENST00000509277 HLA-DMBP28068 263 aa6.58□□□□□ -1.36
LIMCH1-209ENST00000509277 SLC25A39Q9BZJ4 359 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-209ENST00000509277 VWFP04275 2813 aa6.58□□□□□ -1.36
LIMCH1-209ENST00000509277 TRAV2A0A0B4J234 112 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms