RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 MCFD2Q8NI22 146 aa7.52□□□□□ -1.21
LSM6-204ENST00000504181 SGK494Q96LW2 274 aa7.52□□□□□ -1.21
LSM6-204ENST00000504181 LINC00474Q9P2X8 69 aa7.52□□□□□ -1.21
LSM6-204ENST00000504181 TRBV10-1A0A0K0K1A3 114 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 L7N2F9 121 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 GCGP01275 180 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 VAMP2P63027 116 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 IAH1Q2TAA2 248 aaPredicted RBP7.51□□□□□ -1.21
LSM6-204ENST00000504181 C1orf137Q5JT78 98 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 SPANXN2Q5MJ10 180 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 CMTM2Q8TAZ6 248 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 SUN5Q8TC36 379 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 DIRC1Q969H9 104 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 TRIM63Q969Q1 353 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 FUNDC2Q9BWH2 189 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 GSKIPQ9P0R6 139 aa7.51□□□□□ -1.21
LSM6-204ENST00000504181 TRAV8-4A0A0B4J246 113 aa7.5□□□□□ -1.21
LSM6-204ENST00000504181 P01737 135 aa7.5□□□□□ -1.21
LSM6-204ENST00000504181 MBPP02686 304 aaPredicted RBP7.5□□□□□ -1.21
LSM6-204ENST00000504181 UBE2D1P51668 147 aa7.5□□□□□ -1.21
LSM6-204ENST00000504181 NDFIP1Q9BT67 221 aa7.5□□□□□ -1.21
LSM6-204ENST00000504181 TRAV1-1A0A0B4J248 108 aa7.49□□□□□ -1.21
LSM6-204ENST00000504181 C9orf170A2RU37 121 aa7.49□□□□□ -1.21
LSM6-204ENST00000504181 H0Y9J4 135 aa7.49□□□□□ -1.21
LSM6-204ENST00000504181 CTDSP2O14595 271 aa7.49□□□□□ -1.21
LSM6-204ENST00000504181 GZMBP10144 247 aa7.49□□□□□ -1.21
LSM6-204ENST00000504181 GNG5P63218 68 aa7.49□□□□□ -1.21
LSM6-204ENST00000504181 NTM-AS1Q6ZSK4 140 aa7.49□□□□□ -1.21
LSM6-204ENST00000504181 NPCDR1Q9BY65 106 aa7.49□□□□□ -1.21
LSM6-204ENST00000504181 H3BVH4 76 aa7.48□□□□□ -1.21
LSM6-204ENST00000504181 FAUP35544 74 aaKnown RBP7.48□□□□□ -1.21
LSM6-204ENST00000504181 CTF1Q16619 201 aa7.48□□□□□ -1.21
LSM6-204ENST00000504181 CDIP1Q9H305 208 aa7.48□□□□□ -1.21
LSM6-204ENST00000504181 OTORQ9NRC9 128 aa7.48□□□□□ -1.21
LSM6-204ENST00000504181 LYRM2Q9NU23 88 aaPredicted RBP7.48□□□□□ -1.21
LSM6-204ENST00000504181 OR5AC2Q9NZP5 309 aa7.48□□□□□ -1.21
LSM6-204ENST00000504181 LSM5Q9Y4Y9 91 aaKnown RBP7.48□□□□□ -1.21
LSM6-204ENST00000504181 KRTAP1-4P0C5Y4 121 aa7.47□□□□□ -1.21
LSM6-204ENST00000504181 CFAP161Q6P656 301 aa7.47□□□□□ -1.21
LSM6-204ENST00000504181 NEXN-AS1Q8NBZ9 246 aa7.47□□□□□ -1.21
LSM6-204ENST00000504181 OR10G8Q8NGN5 311 aa7.47□□□□□ -1.21
LSM6-204ENST00000504181 Q9H521 79 aa7.47□□□□□ -1.21
LSM6-204ENST00000504181 IGKV3D-20A0A0C4DH25 116 aa7.46□□□□□ -1.22
LSM6-204ENST00000504181 FAM74A1Q5RGS3 127 aa7.46□□□□□ -1.22
LSM6-204ENST00000504181 C20orf203Q8NBC4 194 aa7.46□□□□□ -1.22
LSM6-204ENST00000504181 SFRP2Q96HF1 295 aa7.46□□□□□ -1.22
LSM6-204ENST00000504181 SLC25A21Q9BQT8 299 aaPredicted RBP7.46□□□□□ -1.22
LSM6-204ENST00000504181 IL36BQ9NZH7 164 aa7.46□□□□□ -1.22
LSM6-204ENST00000504181 GAGE12HA6NDE8 117 aa7.45□□□□□ -1.22
LSM6-204ENST00000504181 IGLV7-43P04211 117 aa7.45□□□□□ -1.22
LSM6-204ENST00000504181 S100A11P31949 105 aa7.45□□□□□ -1.22
LSM6-204ENST00000504181 RPL13AP40429 203 aaKnown RBP7.45□□□□□ -1.22
LSM6-204ENST00000504181 RAB2AP61019 212 aa7.45□□□□□ -1.22
LSM6-204ENST00000504181 CYCSP99999 105 aaKnown RBP7.45□□□□□ -1.22
LSM6-204ENST00000504181 ZFP69Q49AA0 526 aa7.45□□□□□ -1.22
LSM6-204ENST00000504181 ARL6IP6Q8N6S5 226 aa7.45□□□□□ -1.22
LSM6-204ENST00000504181 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.45□□□□□ -1.22
LSM6-204ENST00000504181 OR11H4Q8NGC9 324 aa7.45□□□□□ -1.22
LSM6-204ENST00000504181 MITD1Q8WV92 249 aa7.45□□□□□ -1.22
LSM6-204ENST00000504181 VCX3AQ9NNX9 186 aa7.45□□□□□ -1.22
LSM6-204ENST00000504181 IGLV4-60A0A075B6I1 120 aa7.44□□□□□ -1.22
LSM6-204ENST00000504181 TRBV25-1A0A075B6N4 114 aa7.44□□□□□ -1.22
LSM6-204ENST00000504181 EIF3GO75821 320 aaKnown RBP eCLIP7.44□□□□□ -1.22
LSM6-204ENST00000504181 SULT1A1P50225 295 aa7.44□□□□□ -1.22
LSM6-204ENST00000504181 SMUG1Q53HV7 270 aa7.44□□□□□ -1.22
LSM6-204ENST00000504181 THAP6Q8TBB0 222 aa7.44□□□□□ -1.22
LSM6-204ENST00000504181 DERL1Q9BUN8 251 aa7.44□□□□□ -1.22
LSM6-204ENST00000504181 NAA50Q9GZZ1 169 aaKnown RBP7.44□□□□□ -1.22
LSM6-204ENST00000504181 PKIGQ9Y2B9 76 aa7.44□□□□□ -1.22
LSM6-204ENST00000504181 TMEM238LA0A1B0GVL6 79 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 A0A1W2PNN7 141 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 IGSF23A1L1A6 192 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 M0R381 172 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 AMTP48728 403 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 HBG1P69891 147 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 HBG2P69892 147 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 TMEM97Q5BJF2 176 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 C11orf1Q9H5F2 150 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 MBD2Q9UBB5 411 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 PHLDA3Q9Y5J5 127 aa7.43□□□□□ -1.22
LSM6-204ENST00000504181 GVQW2A0A096LPI5 108 aaPredicted RBP7.42□□□□□ -1.22
LSM6-204ENST00000504181 ARMS2P0C7Q2 107 aa7.42□□□□□ -1.22
LSM6-204ENST00000504181 ZNF56Q15929 161 aa7.42□□□□□ -1.22
LSM6-204ENST00000504181 KHDC3LQ587J8 217 aa7.42□□□□□ -1.22
LSM6-204ENST00000504181 PHF5AQ7RTV0 110 aaKnown RBP7.42□□□□□ -1.22
LSM6-204ENST00000504181 RETNLBQ9BQ08 111 aa7.42□□□□□ -1.22
LSM6-204ENST00000504181 RSL24D1Q9UHA3 163 aaKnown RBP7.42□□□□□ -1.22
LSM6-204ENST00000504181 PSG8Q9UQ74 426 aa7.42□□□□□ -1.22
LSM6-204ENST00000504181 TRBV6-1A0A0K0K1D8 114 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 CRYGAP11844 174 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 SULT1A2P50226 295 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 PTTG1IPP53801 180 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 ATP6V1FQ16864 119 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 PRR27Q6MZM9 219 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 PRNTQ86SH4 94 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 STX12Q86Y82 276 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 TOMM5Q8N4H5 51 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 LINC00526Q96FQ7 95 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 KRTAP4-12Q9BQ66 201 aa7.41□□□□□ -1.22
LSM6-204ENST00000504181 IGHV1-24A0A0C4DH33 117 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms