RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SMCO4Q9NRQ5 59 aa9.84□□□□□ -0.83
C9orf3-221ENST00000489562 MSRB1Q9NZV6 116 aa9.84□□□□□ -0.83
C9orf3-221ENST00000489562 HUWE1Q7Z6Z7 4374 aaKnown RBP9.83□□□□□ -0.84
C9orf3-221ENST00000489562 A0A1B0GXF2 115 aa9.83□□□□□ -0.84
C9orf3-221ENST00000489562 MRPL54Q6P161 138 aaKnown RBP9.83□□□□□ -0.84
C9orf3-221ENST00000489562 Q6ZTC4 211 aa9.83□□□□□ -0.84
C9orf3-221ENST00000489562 POM121L12Q8N7R1 296 aa9.83□□□□□ -0.84
C9orf3-221ENST00000489562 DPH3P1Q9H4G8 78 aa9.83□□□□□ -0.84
C9orf3-221ENST00000489562 URGCP-MRPS24S4R325 110 aa9.83□□□□□ -0.84
C9orf3-221ENST00000489562 TRAV10A0A0B4J240 114 aa9.82□□□□□ -0.84
C9orf3-221ENST00000489562 CRYGDP07320 174 aa9.82□□□□□ -0.84
C9orf3-221ENST00000489562 SLAQ13239 276 aa9.82□□□□□ -0.84
C9orf3-221ENST00000489562 COX19Q49B96 90 aa9.82□□□□□ -0.84
C9orf3-221ENST00000489562 FAM74A4Q5TZK3 123 aa9.82□□□□□ -0.84
C9orf3-221ENST00000489562 C14orf178Q8N769 122 aaPredicted RBP9.82□□□□□ -0.84
C9orf3-221ENST00000489562 ZNF479Q96JC4 524 aa9.82□□□□□ -0.84
C9orf3-221ENST00000489562 TMEM191AQ9H0A3 160 aa9.82□□□□□ -0.84
C9orf3-221ENST00000489562 JPT2Q9H910 190 aa9.82□□□□□ -0.84
C9orf3-221ENST00000489562 A0A087WWL8 130 aa9.81□□□□□ -0.84
C9orf3-221ENST00000489562 TRGV4A0A0C4DH28 118 aa9.81□□□□□ -0.84
C9orf3-221ENST00000489562 IGHV3-53P01767 116 aa9.81□□□□□ -0.84
C9orf3-221ENST00000489562 EVI2AP22794 236 aa9.81□□□□□ -0.84
C9orf3-221ENST00000489562 CAMPP49913 170 aa9.81□□□□□ -0.84
C9orf3-221ENST00000489562 UFSP1Q6NVU6 142 aa9.81□□□□□ -0.84
C9orf3-221ENST00000489562 GATD1Q8NB37 220 aa9.81□□□□□ -0.84
C9orf3-221ENST00000489562 SAMD10Q9BYL1 202 aa9.81□□□□□ -0.84
C9orf3-221ENST00000489562 KIF25-AS1Q9Y6Z4 181 aa9.81□□□□□ -0.84
C9orf3-221ENST00000489562 TRBV24-1A0A075B6N3 115 aa9.8□□□□□ -0.84
C9orf3-221ENST00000489562 DEFB131BA0A096LNP1 70 aa9.8□□□□□ -0.84
C9orf3-221ENST00000489562 RAB4BP61018 213 aa9.8□□□□□ -0.84
C9orf3-221ENST00000489562 ELOBQ15370 118 aa9.8□□□□□ -0.84
C9orf3-221ENST00000489562 FRZBQ92765 325 aa9.8□□□□□ -0.84
C9orf3-221ENST00000489562 WWC2-AS2Q96NR7 200 aa9.8□□□□□ -0.84
C9orf3-221ENST00000489562 TGP01266 2768 aa9.79□□□□□ -0.84
C9orf3-221ENST00000489562 F5H768 121 aa9.79□□□□□ -0.84
C9orf3-221ENST00000489562 HTN3P15516 51 aa9.79□□□□□ -0.84
C9orf3-221ENST00000489562 GATA1P15976 413 aaPredicted RBP9.79□□□□□ -0.84
C9orf3-221ENST00000489562 FHL2Q14192 279 aa9.79□□□□□ -0.84
C9orf3-221ENST00000489562 ZNF56Q15929 161 aa9.79□□□□□ -0.84
C9orf3-221ENST00000489562 TMEM88Q6PEY1 159 aa9.79□□□□□ -0.84
C9orf3-221ENST00000489562 CBLN2Q8IUK8 224 aa9.79□□□□□ -0.84
C9orf3-221ENST00000489562 PRO0255Q9UI72 69 aa9.79□□□□□ -0.84
C9orf3-221ENST00000489562 TRBV6-4A0A1B0GX49 114 aa9.78□□□□□ -0.84
C9orf3-221ENST00000489562 F5H697 171 aa9.78□□□□□ -0.84
C9orf3-221ENST00000489562 H7C1H1 209 aa9.78□□□□□ -0.84
C9orf3-221ENST00000489562 MGPP08493 103 aa9.78□□□□□ -0.84
C9orf3-221ENST00000489562 HOXA5P20719 270 aa9.78□□□□□ -0.84
C9orf3-221ENST00000489562 LINC00315P59091 139 aa9.78□□□□□ -0.84
C9orf3-221ENST00000489562 PHLDA1Q8WV24 401 aaPredicted RBP9.78□□□□□ -0.84
C9orf3-221ENST00000489562 FAM210BQ96KR6 192 aa9.78□□□□□ -0.84
C9orf3-221ENST00000489562 HHLA3Q9XRX5 114 aa9.78□□□□□ -0.84
C9orf3-221ENST00000489562 TGIF2-C20orf24A0A0A6YYL0 155 aa9.77□□□□□ -0.85
C9orf3-221ENST00000489562 IGHV3-73A0A0B4J1V6 119 aa9.77□□□□□ -0.85
C9orf3-221ENST00000489562 NUPR2A6NF83 97 aa9.77□□□□□ -0.85
C9orf3-221ENST00000489562 HLA-DQA1P01909 254 aa9.77□□□□□ -0.85
C9orf3-221ENST00000489562 MT-ND6P03923 174 aa9.77□□□□□ -0.85
C9orf3-221ENST00000489562 RHOHQ15669 191 aa9.77□□□□□ -0.85
C9orf3-221ENST00000489562 FAM104BQ5XKR9 115 aa9.77□□□□□ -0.85
C9orf3-221ENST00000489562 YPEL4Q96NS1 127 aa9.77□□□□□ -0.85
C9orf3-221ENST00000489562 GNB1LQ9BYB4 327 aa9.77□□□□□ -0.85
C9orf3-221ENST00000489562 H3BNG1 76 aa9.76□□□□□ -0.85
C9orf3-221ENST00000489562 K7EQD1 137 aa9.76□□□□□ -0.85
C9orf3-221ENST00000489562 CRYBA4P53673 196 aa9.76□□□□□ -0.85
C9orf3-221ENST00000489562 AMN1Q8IY45 258 aa9.76□□□□□ -0.85
C9orf3-221ENST00000489562 MRAP2Q96G30 205 aa9.76□□□□□ -0.85
C9orf3-221ENST00000489562 PRADC1Q9BSG0 188 aa9.76□□□□□ -0.85
C9orf3-221ENST00000489562 TRBV10-1A0A0K0K1A3 114 aa9.75□□□□□ -0.85
C9orf3-221ENST00000489562 PAX4O43316 350 aa9.75□□□□□ -0.85
C9orf3-221ENST00000489562 RAB4AP20338 218 aa9.75□□□□□ -0.85
C9orf3-221ENST00000489562 TMEM136Q6ZRR5 245 aa9.75□□□□□ -0.85
C9orf3-221ENST00000489562 SLC25A29Q8N8R3 303 aa9.75□□□□□ -0.85
C9orf3-221ENST00000489562 MUC7Q8TAX7 377 aa9.75□□□□□ -0.85
C9orf3-221ENST00000489562 RNF185Q96GF1 192 aa9.75□□□□□ -0.85
C9orf3-221ENST00000489562 TRAV26-1A0A087WT03 109 aa9.74□□□□□ -0.85
C9orf3-221ENST00000489562 SCO1O75880 301 aa9.74□□□□□ -0.85
C9orf3-221ENST00000489562 PPP1R17O96001 155 aa9.74□□□□□ -0.85
C9orf3-221ENST00000489562 PPBPP02775 128 aa9.74□□□□□ -0.85
C9orf3-221ENST00000489562 SUMO4Q6EEV6 95 aa9.74□□□□□ -0.85
C9orf3-221ENST00000489562 CEMP1Q6PRD7 247 aaPredicted RBP9.74□□□□□ -0.85
C9orf3-221ENST00000489562 KLK5Q9Y337 293 aaPredicted RBP9.74□□□□□ -0.85
C9orf3-221ENST00000489562 M0QY20 66 aa9.73□□□□□ -0.85
C9orf3-221ENST00000489562 Q6ZSN1 163 aa9.73□□□□□ -0.85
C9orf3-221ENST00000489562 C15orf53Q8NAA6 179 aa9.73□□□□□ -0.85
C9orf3-221ENST00000489562 A0A0J9YY99 117 aa9.72□□□□□ -0.85
C9orf3-221ENST00000489562 TCTAP57738 103 aa9.72□□□□□ -0.85
C9orf3-221ENST00000489562 MRPL51Q4U2R6 128 aaKnown RBP9.72□□□□□ -0.85
C9orf3-221ENST00000489562 SH2D6Q7Z4S9 175 aa9.72□□□□□ -0.85
C9orf3-221ENST00000489562 VSIG2Q96IQ7 327 aa9.72□□□□□ -0.85
C9orf3-221ENST00000489562 DNAJC30Q96LL9 226 aa9.72□□□□□ -0.85
C9orf3-221ENST00000489562 COLCA2A8K830 154 aa9.71□□□□□ -0.86
C9orf3-221ENST00000489562 APCSP02743 223 aa9.71□□□□□ -0.86
C9orf3-221ENST00000489562 GYPEP15421 78 aa9.71□□□□□ -0.86
C9orf3-221ENST00000489562 CKS2P33552 79 aa9.71□□□□□ -0.86
C9orf3-221ENST00000489562 RPL36AP83881 106 aaKnown RBP9.71□□□□□ -0.86
C9orf3-221ENST00000489562 MRPL23Q16540 153 aaKnown RBP9.71□□□□□ -0.86
C9orf3-221ENST00000489562 ORMDL3Q8N138 153 aa9.71□□□□□ -0.86
C9orf3-221ENST00000489562 RPL36ALQ969Q0 106 aaKnown RBP9.71□□□□□ -0.86
C9orf3-221ENST00000489562 NIT2Q9NQR4 276 aa9.71□□□□□ -0.86
C9orf3-221ENST00000489562 ICOSQ9Y6W8 199 aa9.71□□□□□ -0.86
C9orf3-221ENST00000489562 TRAV26-2A0A0B4J265 109 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms