RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 BRWD1Q9NSI6 2320 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 TRAV10A0A0B4J240 114 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 TRAV12-1A0A0B4J245 112 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 C3orf85A0A1B0GTC6 90 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 LOC285095A0A1B0GVY8 99 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 BBIP1A8MTZ0 92 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 E7EUB6 86 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 ERC2-IT1O76042 136 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 ZNF25P17030 456 aaPredicted RBP2.17□□□□□ -2.06
VPS13D-207ENST00000476169 IZUMO2Q6UXV1 221 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 ARPINQ7Z6K5 226 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 GKN2Q86XP6 184 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 TTTY12Q9BZ98 90 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 SOX21Q9Y651 276 aaPredicted RBP2.17□□□□□ -2.06
VPS13D-207ENST00000476169 CACNA1HO95180 2353 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 KIAA2026Q5HYC2 2103 aa2.17□□□□□ -2.06
VPS13D-207ENST00000476169 SHROOM3Q8TF72 1996 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 PLXNA3P51805 1871 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 NCOR2Q9Y618 2525 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 A0A0G2JMM0 328 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 CXorf51AA0A1B0GTR3 108 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 PNMA8CA0A1B0GUJ8 204 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 A0A1W2PPB8 328 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 C2orf70A6NJV1 201 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 KIR3DP1A8MWS1 328 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 APOC4-APOC2K7ER74 178 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 CDC42EP2O14613 210 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 IGF2P01344 180 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 IFNGP01579 166 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 APOC2P02655 101 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 CD14P08571 375 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 CCL4P13236 92 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 ZNF93P35789 620 aaPredicted RBP2.16□□□□□ -2.06
VPS13D-207ENST00000476169 SPINT3P49223 89 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 TPRXLQ17RH7 258 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 Q1T7F1 81 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 RPS19BP1Q86WX3 136 aaKnown RBP2.16□□□□□ -2.06
VPS13D-207ENST00000476169 LYPD1Q8N2G4 141 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 COX14Q96I36 57 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 TXNDC17Q9BRA2 123 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 SLC35B3Q9H1N7 401 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 DNAJC15Q9Y5T4 150 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 PRUNE2Q8WUY3 3088 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 GVINP1Q7Z2Y8 2422 aa2.16□□□□□ -2.06
VPS13D-207ENST00000476169 DNAH12Q6ZR08 3092 aa2.15□□□□□ -2.06
VPS13D-207ENST00000476169 IGHV1-24A0A0C4DH33 117 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 C9orf170A2RU37 121 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 TNFP01375 233 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 CD3DP04234 171 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 PRB1P04280 392 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 IGKV4-1P06312 121 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 KRTAP13-3Q3SY46 172 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 CCSMST1Q4G0I0 132 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 OR5AS1Q8N127 324 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 OTOSQ8NHW6 89 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 ZNF431Q8TF32 576 aaPredicted RBP2.15□□□□□ -2.07
VPS13D-207ENST00000476169 SMIM7Q9BQ49 75 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 PSMG3Q9BT73 122 aaPredicted RBP2.15□□□□□ -2.07
VPS13D-207ENST00000476169 TMEM191AQ9H0A3 160 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 METTL1Q9UBP6 276 aaKnown RBP2.15□□□□□ -2.07
VPS13D-207ENST00000476169 ZFHX2Q9C0A1 2572 aaPredicted RBP2.15□□□□□ -2.07
VPS13D-207ENST00000476169 ATG2AQ2TAZ0 1938 aa2.15□□□□□ -2.07
VPS13D-207ENST00000476169 GBF1Q92538 1859 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 SPRR5A0A1B0GTR4 108 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 ZNF736B4DX44 427 aaPredicted RBP2.14□□□□□ -2.07
VPS13D-207ENST00000476169 ATP6V1G2-DDX39BF2Z307 99 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 YPEL1O60688 119 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 EDF1O60869 148 aaKnown RBP2.14□□□□□ -2.07
VPS13D-207ENST00000476169 PLGLB1Q02325 96 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 CASC2Q6XLA1 102 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 KCNRGQ8N5I3 272 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 TCTEX1D1Q8N7M0 179 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 Q96M85 177 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 CIB3Q96Q77 187 aaPredicted RBP2.14□□□□□ -2.07
VPS13D-207ENST00000476169 CCDC167Q9P0B6 97 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 LSM2Q9Y333 95 aaKnown RBP2.14□□□□□ -2.07
VPS13D-207ENST00000476169 OTOGLQ3ZCN5 2332 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 F5P12259 2224 aa2.14□□□□□ -2.07
VPS13D-207ENST00000476169 LAMA2P24043 3122 aaKnown RBP2.13□□□□□ -2.07
VPS13D-207ENST00000476169 PIEZO1Q92508 2521 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 F6UZH7 168 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 STATHP02808 62 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 PYYP10082 97 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 GNG11P61952 73 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 MRPS10P82664 201 aaKnown RBP2.13□□□□□ -2.07
VPS13D-207ENST00000476169 DEFB110Q30KQ9 67 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 TEX261Q6UWH6 196 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 ATOH7Q8N100 152 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 SPACA4Q8TDM5 124 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 SAR1AQ9NR31 198 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 A0A0C4DFX4 3053 aa2.13□□□□□ -2.07
VPS13D-207ENST00000476169 MUC22E2RYF6 1773 aaPredicted RBP2.13□□□□□ -2.07
VPS13D-207ENST00000476169 EP300Q09472 2414 aaPredicted RBP2.12□□□□□ -2.07
VPS13D-207ENST00000476169 ZFC3H1O60293 1989 aaKnown RBP2.12□□□□□ -2.07
VPS13D-207ENST00000476169 CCDC88CQ9P219 2028 aa2.12□□□□□ -2.07
VPS13D-207ENST00000476169 TRBV20-1A0A075B6N2 111 aa2.12□□□□□ -2.07
VPS13D-207ENST00000476169 A0A087WSZ3 146 aa2.12□□□□□ -2.07
VPS13D-207ENST00000476169 PDE6HQ13956 83 aa2.12□□□□□ -2.07
VPS13D-207ENST00000476169 MEIG1Q5JSS6 88 aa2.12□□□□□ -2.07
VPS13D-207ENST00000476169 BRD3OSQ6XYD6 125 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms