RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 SLAQ13239 276 aa8.33□□□□□ -1.08
VPS52-213ENST00000461743 FAM162BQ5T6X4 162 aa8.33□□□□□ -1.08
VPS52-213ENST00000461743 ZC2HC1AQ96GY0 325 aa8.33□□□□□ -1.08
VPS52-213ENST00000461743 MRPL16Q9NX20 251 aaKnown RBP8.33□□□□□ -1.08
VPS52-213ENST00000461743 XKRY2A2RUG3 117 aa8.32□□□□□ -1.08
VPS52-213ENST00000461743 FAM3BP58499 235 aaPredicted RBP8.32□□□□□ -1.08
VPS52-213ENST00000461743 PIK3CD-AS1Q5SR53 167 aa8.32□□□□□ -1.08
VPS52-213ENST00000461743 PTH2Q96A98 100 aa8.32□□□□□ -1.08
VPS52-213ENST00000461743 SMIM12Q96EX1 92 aa8.32□□□□□ -1.08
VPS52-213ENST00000461743 BTF3L4Q96K17 158 aa8.32□□□□□ -1.08
VPS52-213ENST00000461743 C9orf85Q96MD7 179 aa8.32□□□□□ -1.08
VPS52-213ENST00000461743 SNHG12Q9BXW3 62 aa8.32□□□□□ -1.08
VPS52-213ENST00000461743 C11orf21Q9P2W6 132 aa8.32□□□□□ -1.08
VPS52-213ENST00000461743 NAT8Q9UHE5 227 aa8.32□□□□□ -1.08
VPS52-213ENST00000461743 TRAV4A0A0B4J268 109 aa8.31□□□□□ -1.08
VPS52-213ENST00000461743 CIDEAO60543 219 aa8.31□□□□□ -1.08
VPS52-213ENST00000461743 ERVFC1-1P60608 527 aa8.31□□□□□ -1.08
VPS52-213ENST00000461743 LINC01559Q495D7 138 aa8.31□□□□□ -1.08
VPS52-213ENST00000461743 POM121L12Q8N7R1 296 aa8.31□□□□□ -1.08
VPS52-213ENST00000461743 MLST8Q9BVC4 326 aa8.31□□□□□ -1.08
VPS52-213ENST00000461743 TRAV26-1A0A087WT03 109 aa8.3□□□□□ -1.08
VPS52-213ENST00000461743 DLEU1O43261 78 aa8.3□□□□□ -1.08
VPS52-213ENST00000461743 GNRH2O43555 120 aa8.3□□□□□ -1.08
VPS52-213ENST00000461743 SH2D1AO60880 128 aa8.3□□□□□ -1.08
VPS52-213ENST00000461743 ASIPP42127 132 aa8.3□□□□□ -1.08
VPS52-213ENST00000461743 OR5I1Q13606 314 aa8.3□□□□□ -1.08
VPS52-213ENST00000461743 UBE2DNLQ8IWF7 75 aa8.3□□□□□ -1.08
VPS52-213ENST00000461743 DNAH10Q8IVF4 4471 aa8.29□□□□□ -1.08
VPS52-213ENST00000461743 IGKV3D-20A0A0C4DH25 116 aa8.29□□□□□ -1.08
VPS52-213ENST00000461743 ORM1P02763 201 aa8.29□□□□□ -1.08
VPS52-213ENST00000461743 RNASE3P12724 160 aaKnown RBP8.29□□□□□ -1.08
VPS52-213ENST00000461743 S100A4P26447 101 aaKnown RBP8.29□□□□□ -1.08
VPS52-213ENST00000461743 BAGE2Q86Y30 109 aa8.29□□□□□ -1.08
VPS52-213ENST00000461743 ANAPC16Q96DE5 110 aa8.29□□□□□ -1.08
VPS52-213ENST00000461743 IL36BQ9NZH7 164 aa8.29□□□□□ -1.08
VPS52-213ENST00000461743 PRO0255Q9UI72 69 aa8.29□□□□□ -1.08
VPS52-213ENST00000461743 TMEM250H0YL14 139 aa8.28□□□□□ -1.08
VPS52-213ENST00000461743 NUDT3O95989 172 aa8.28□□□□□ -1.08
VPS52-213ENST00000461743 ZNF25P17030 456 aaPredicted RBP8.28□□□□□ -1.08
VPS52-213ENST00000461743 CRIP1P50238 77 aa8.28□□□□□ -1.08
VPS52-213ENST00000461743 ZNF876PQ49A33 203 aa8.28□□□□□ -1.08
VPS52-213ENST00000461743 ANKRD39Q53RE8 183 aa8.28□□□□□ -1.08
VPS52-213ENST00000461743 IMMP2LQ96T52 175 aa8.28□□□□□ -1.08
VPS52-213ENST00000461743 TRGV4A0A0C4DH28 118 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 MED14OSP0DP75 135 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 G0S2P27469 103 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 GNG4P50150 75 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 CCL18P55774 89 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 FHL2Q14192 279 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 TMEM241Q24JQ0 296 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 CENPWQ5EE01 88 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 OR4C5Q8NGB2 326 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 SMIM7Q9BQ49 75 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 DERL1Q9BUN8 251 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 ICOSQ9Y6W8 199 aa8.27□□□□□ -1.09
VPS52-213ENST00000461743 A0A0J9YY99 117 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 H3BVH4 76 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 PAX4O43316 350 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 CRYBA4P53673 196 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 ADIRFQ15847 76 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 KCNIP4Q6PIL6 250 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 NHLRC2Q8NBF2 726 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 SYT8Q8NBV8 401 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 VSIG2Q96IQ7 327 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 ZNF479Q96JC4 524 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 HHLA3Q9XRX5 114 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 DNAH2Q9P225 4427 aa8.26□□□□□ -1.09
VPS52-213ENST00000461743 A8MWV9 139 aa8.25□□□□□ -1.09
VPS52-213ENST00000461743 C9JCJ5 164 aa8.25□□□□□ -1.09
VPS52-213ENST00000461743 RS1O15537 224 aa8.25□□□□□ -1.09
VPS52-213ENST00000461743 IGHV3-53P01767 116 aa8.25□□□□□ -1.09
VPS52-213ENST00000461743 RPL23P62829 140 aaKnown RBP8.25□□□□□ -1.09
VPS52-213ENST00000461743 CFAP126Q5VTH2 177 aa8.25□□□□□ -1.09
VPS52-213ENST00000461743 ZFP2Q6ZN57 461 aa8.25□□□□□ -1.09
VPS52-213ENST00000461743 SCRT2Q9NQ03 307 aa8.25□□□□□ -1.09
VPS52-213ENST00000461743 A0A096LPF7 62 aa8.24□□□□□ -1.09
VPS52-213ENST00000461743 PGPEP1LA6NFU8 196 aa8.24□□□□□ -1.09
VPS52-213ENST00000461743 RHODO00212 210 aa8.24□□□□□ -1.09
VPS52-213ENST00000461743 IGLV2-8P01709 118 aa8.24□□□□□ -1.09
VPS52-213ENST00000461743 GATA1P15976 413 aaPredicted RBP8.24□□□□□ -1.09
VPS52-213ENST00000461743 MRPL23Q16540 153 aaKnown RBP8.24□□□□□ -1.09
VPS52-213ENST00000461743 PRR27Q6MZM9 219 aa8.24□□□□□ -1.09
VPS52-213ENST00000461743 SH2D6Q7Z4S9 175 aa8.24□□□□□ -1.09
VPS52-213ENST00000461743 UPK3BQ9BT76 320 aa8.24□□□□□ -1.09
VPS52-213ENST00000461743 PHLDA3Q9Y5J5 127 aa8.24□□□□□ -1.09
VPS52-213ENST00000461743 DNAH17Q9UFH2 4485 aa8.23□□□□□ -1.09
VPS52-213ENST00000461743 TRBV20OR9-2A0A075B6H5 130 aa8.23□□□□□ -1.09
VPS52-213ENST00000461743 NXPH4O95158 308 aa8.23□□□□□ -1.09
VPS52-213ENST00000461743 ARMS2P0C7Q2 107 aa8.23□□□□□ -1.09
VPS52-213ENST00000461743 MGST1P10620 155 aaKnown RBP8.23□□□□□ -1.09
VPS52-213ENST00000461743 RPS20P60866 119 aaKnown RBP8.23□□□□□ -1.09
VPS52-213ENST00000461743 RHOHQ15669 191 aa8.23□□□□□ -1.09
VPS52-213ENST00000461743 TEX43Q6ZNM6 134 aa8.23□□□□□ -1.09
VPS52-213ENST00000461743 MIEN1Q9BRT3 115 aa8.23□□□□□ -1.09
VPS52-213ENST00000461743 MRPS16Q9Y3D3 137 aaKnown RBP8.23□□□□□ -1.09
VPS52-213ENST00000461743 HECTD4Q9Y4D8 3996 aa8.23□□□□□ -1.09
VPS52-213ENST00000461743 TRAV9-1A0A075B6T8 112 aa8.22□□□□□ -1.09
VPS52-213ENST00000461743 TRBV6-4A0A1B0GX49 114 aa8.22□□□□□ -1.09
VPS52-213ENST00000461743 C19orf71A6NCJ1 209 aa8.22□□□□□ -1.09
VPS52-213ENST00000461743 SNAI2O43623 268 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 146.1 ms