RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TMEM158Q8WZ71 300 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 IFI27L1Q96BM0 104 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 TRGV11A0A075B6L2 103 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 IGHV1OR15-1A0A075B7D0 117 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 H3BVH4 76 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 INSP01308 110 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 SHISA2Q6UWI4 295 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 C3orf56Q8N813 242 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 SCRT2Q9NQ03 307 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 GOLT1BQ9Y3E0 138 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 PHLDA3Q9Y5J5 127 aa13.42□□□□□ -0.26
CCDC88C-203ENST00000389856 TRAV12-2A0A075B6T6 113 aa13.41□□□□□ -0.26
CCDC88C-203ENST00000389856 KIR3DS1Q14943 382 aa13.41□□□□□ -0.26
CCDC88C-203ENST00000389856 GTSCR1Q86UQ5 136 aa13.41□□□□□ -0.26
CCDC88C-203ENST00000389856 JMJD1CQ15652 2540 aa13.41□□□□□ -0.26
CCDC88C-203ENST00000389856 hDV102S1A0JD36 115 aa13.4□□□□□ -0.26
CCDC88C-203ENST00000389856 CD7P09564 240 aa13.4□□□□□ -0.26
CCDC88C-203ENST00000389856 GAGE1Q13065 139 aa13.4□□□□□ -0.26
CCDC88C-203ENST00000389856 BATFQ16520 125 aa13.4□□□□□ -0.26
CCDC88C-203ENST00000389856 C12orf54Q6X4T0 127 aa13.4□□□□□ -0.26
CCDC88C-203ENST00000389856 TIMM8BQ9Y5J9 83 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-203ENST00000389856 K7EMI3 77 aa13.39□□□□□ -0.27
CCDC88C-203ENST00000389856 PPP1R17O96001 155 aa13.39□□□□□ -0.27
CCDC88C-203ENST00000389856 EVI2AP22794 236 aa13.39□□□□□ -0.27
CCDC88C-203ENST00000389856 Q6ZQT7 251 aa13.39□□□□□ -0.27
CCDC88C-203ENST00000389856 TRPT1Q86TN4 253 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-203ENST00000389856 ZNF124Q15973 351 aa13.39□□□□□ -0.27
CCDC88C-203ENST00000389856 WFDC9Q8NEX5 89 aa13.39□□□□□ -0.27
CCDC88C-203ENST00000389856 IGLV2-18A0A075B6J9 118 aa13.38□□□□□ -0.27
CCDC88C-203ENST00000389856 M0R381 172 aa13.38□□□□□ -0.27
CCDC88C-203ENST00000389856 COX8AP10176 69 aa13.38□□□□□ -0.27
CCDC88C-203ENST00000389856 MORN3Q6PF18 240 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-203ENST00000389856 NRACQ8N912 160 aa13.38□□□□□ -0.27
CCDC88C-203ENST00000389856 DPH3P1Q9H4G8 78 aa13.38□□□□□ -0.27
CCDC88C-203ENST00000389856 SORL1Q92673 2214 aa13.38□□□□□ -0.27
CCDC88C-203ENST00000389856 RBMY1BA6NDE4 496 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 RBMY1EA6NEQ0 496 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 H0Y8G0 127 aa13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 ATP5LO75964 103 aa13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 NXPH4O95158 308 aa13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 RBMY1DP0C7P1 496 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 FXYD7P58549 80 aa13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 SYT8Q8NBV8 401 aa13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 C20orf78Q9BR46 151 aa13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 LINC00467Q9BRT7 94 aa13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 C1QTNF4Q9BXJ3 329 aa13.37□□□□□ -0.27
CCDC88C-203ENST00000389856 AGRNO00468 2067 aa13.36□□□□□ -0.27
CCDC88C-203ENST00000389856 CBY3A6NI87 242 aa13.36□□□□□ -0.27
CCDC88C-203ENST00000389856 GNRH2O43555 120 aa13.36□□□□□ -0.27
CCDC88C-203ENST00000389856 LAGE3Q14657 143 aa13.35□□□□□ -0.27
CCDC88C-203ENST00000389856 STPG4Q8N801 248 aa13.35□□□□□ -0.27
CCDC88C-203ENST00000389856 NIPBLQ6KC79 2804 aaeCLIP13.35□□□□□ -0.27
CCDC88C-203ENST00000389856 RNASE3P12724 160 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-203ENST00000389856 ZNF25P17030 456 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-203ENST00000389856 AP1S3Q96PC3 154 aa13.35□□□□□ -0.27
CCDC88C-203ENST00000389856 IGHV3-16A0A0C4DH30 117 aa13.34□□□□□ -0.27
CCDC88C-203ENST00000389856 DLEU1O43261 78 aa13.34□□□□□ -0.27
CCDC88C-203ENST00000389856 PRIMA1Q86XR5 153 aa13.34□□□□□ -0.27
CCDC88C-203ENST00000389856 POM121L12Q8N7R1 296 aa13.34□□□□□ -0.27
CCDC88C-203ENST00000389856 LINC01587Q99440 93 aa13.34□□□□□ -0.27
CCDC88C-203ENST00000389856 TMEM208Q9BTX3 173 aa13.34□□□□□ -0.27
CCDC88C-203ENST00000389856 C19orf73Q9NVV2 129 aa13.34□□□□□ -0.27
CCDC88C-203ENST00000389856 ATRQ13535 2644 aa13.33□□□□□ -0.28
CCDC88C-203ENST00000389856 HINT1P49773 126 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-203ENST00000389856 Q8N1Y9 231 aa13.33□□□□□ -0.28
CCDC88C-203ENST00000389856 C9orf85Q96MD7 179 aa13.33□□□□□ -0.28
CCDC88C-203ENST00000389856 SIVA1O15304 175 aa13.32□□□□□ -0.28
CCDC88C-203ENST00000389856 WIPF1O43516 503 aa13.32□□□□□ -0.28
CCDC88C-203ENST00000389856 SMIM17P0DL12 118 aa13.32□□□□□ -0.28
CCDC88C-203ENST00000389856 GATA1P15976 413 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-203ENST00000389856 ZNF415Q09FC8 603 aa13.32□□□□□ -0.28
CCDC88C-203ENST00000389856 ORMDL2Q53FV1 153 aa13.32□□□□□ -0.28
CCDC88C-203ENST00000389856 ORAOV1Q8WV07 137 aa13.32□□□□□ -0.28
CCDC88C-203ENST00000389856 SMIM2Q9BVW6 85 aa13.32□□□□□ -0.28
CCDC88C-203ENST00000389856 ZMAT4Q9H898 229 aa13.32□□□□□ -0.28
CCDC88C-203ENST00000389856 LINC01549A6NIU2 74 aa13.31□□□□□ -0.28
CCDC88C-203ENST00000389856 GAS8-AS1O95177 125 aa13.31□□□□□ -0.28
CCDC88C-203ENST00000389856 RPL32P62910 135 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-203ENST00000389856 XCL2Q9UBD3 114 aa13.31□□□□□ -0.28
CCDC88C-203ENST00000389856 G0S2P27469 103 aa13.31□□□□□ -0.28
CCDC88C-203ENST00000389856 RBMY1A1P0DJD3 496 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-203ENST00000389856 RBMY1CP0DJD4 496 aa13.29□□□□□ -0.28
CCDC88C-203ENST00000389856 SUMO2P61956 95 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-203ENST00000389856 ODF1Q14990 250 aa13.29□□□□□ -0.28
CCDC88C-203ENST00000389856 RBMY1FQ15415 496 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-203ENST00000389856 BOD1L2Q8IYS8 172 aa13.29□□□□□ -0.28
CCDC88C-203ENST00000389856 PRSS1P07477 247 aa13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 RIPPLY3P57055 190 aa13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 PIK3CD-AS1Q5SR53 167 aa13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 SPXQ9BT56 116 aa13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 NUDT3O95989 172 aa13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 HTN1P15515 57 aa13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 RPL35AP18077 110 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 ANKRD39Q53RE8 183 aa13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 BVES-AS1Q5T3Y7 98 aa13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 MDFICQ9P1T7 246 aa13.28□□□□□ -0.28
CCDC88C-203ENST00000389856 TRAV26-2A0A0B4J265 109 aa13.27□□□□□ -0.29
CCDC88C-203ENST00000389856 DPM2O94777 84 aa13.27□□□□□ -0.29
CCDC88C-203ENST00000389856 FGF6P10767 208 aa13.27□□□□□ -0.29
CCDC88C-203ENST00000389856 MPV17L2Q567V2 206 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms