RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 CRYGBP07316 175 aa10.95□□□□□ -0.66
RTF1-201ENST00000389629 RNF185Q96GF1 192 aa10.95□□□□□ -0.66
RTF1-201ENST00000389629 RASL10AQ92737 203 aa10.95□□□□□ -0.66
RTF1-201ENST00000389629 U3KQK5 164 aa10.95□□□□□ -0.66
RTF1-201ENST00000389629 SUMO4Q6EEV6 95 aa10.95□□□□□ -0.66
RTF1-201ENST00000389629 DAND5Q8N907 189 aa10.95□□□□□ -0.66
RTF1-201ENST00000389629 LEPROTO15243 131 aa10.94□□□□□ -0.66
RTF1-201ENST00000389629 NDUFV3P56181 108 aaKnown RBP10.94□□□□□ -0.66
RTF1-201ENST00000389629 MSRB2Q9Y3D2 182 aa10.94□□□□□ -0.66
RTF1-201ENST00000389629 USMG5Q96IX5 58 aa10.94□□□□□ -0.66
RTF1-201ENST00000389629 JPT2Q9H910 190 aa10.94□□□□□ -0.66
RTF1-201ENST00000389629 HOXB4P17483 251 aaPredicted RBP10.94□□□□□ -0.66
RTF1-201ENST00000389629 CLEC2BQ92478 149 aa10.94□□□□□ -0.66
RTF1-201ENST00000389629 IGHV1-69DA0A0B4J2H0 117 aa10.94□□□□□ -0.66
RTF1-201ENST00000389629 TEX49A0A1B0GTD5 131 aa10.94□□□□□ -0.66
RTF1-201ENST00000389629 Q8N1Y9 231 aa10.93□□□□□ -0.66
RTF1-201ENST00000389629 A0A096LNJ9 63 aa10.92□□□□□ -0.66
RTF1-201ENST00000389629 Q8N9W7 124 aa10.92□□□□□ -0.66
RTF1-201ENST00000389629 PTPN13Q12923 2485 aa10.92□□□□□ -0.66
RTF1-201ENST00000389629 IGHV1OR15-1A0A075B7D0 117 aa10.92□□□□□ -0.66
RTF1-201ENST00000389629 HHLA3Q9XRX5 114 aa10.92□□□□□ -0.66
RTF1-201ENST00000389629 ICOSQ9Y6W8 199 aa10.92□□□□□ -0.66
RTF1-201ENST00000389629 TRGV1A0A0A0MS02 117 aa10.92□□□□□ -0.66
RTF1-201ENST00000389629 IGHG4P01861 327 aa10.92□□□□□ -0.66
RTF1-201ENST00000389629 INAFM2P0DMQ5 153 aa10.91□□□□□ -0.66
RTF1-201ENST00000389629 MRPL23Q16540 153 aaKnown RBP10.91□□□□□ -0.66
RTF1-201ENST00000389629 FAM208BQ5VWN6 2430 aa10.91□□□□□ -0.66
RTF1-201ENST00000389629 NDUFA4O00483 81 aa10.91□□□□□ -0.66
RTF1-201ENST00000389629 MRPL53Q96EL3 112 aaKnown RBP10.91□□□□□ -0.66
RTF1-201ENST00000389629 CFAP126Q5VTH2 177 aa10.91□□□□□ -0.66
RTF1-201ENST00000389629 AGRNO00468 2067 aa10.91□□□□□ -0.66
RTF1-201ENST00000389629 TLN1Q9Y490 2541 aaKnown RBP10.91□□□□□ -0.66
RTF1-201ENST00000389629 CHCHD5Q9BSY4 110 aa10.91□□□□□ -0.66
RTF1-201ENST00000389629 PIFOQ8TCI5 191 aa10.9□□□□□ -0.66
RTF1-201ENST00000389629 CDH23Q9H251 3354 aa10.9□□□□□ -0.66
RTF1-201ENST00000389629 FSTL3O95633 263 aa10.9□□□□□ -0.66
RTF1-201ENST00000389629 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.9□□□□□ -0.67
RTF1-201ENST00000389629 TRBV10-2A0A0K0K1G8 114 aa10.9□□□□□ -0.67
RTF1-201ENST00000389629 IGKV2-29A2NJV5 120 aaPredicted RBP10.9□□□□□ -0.67
RTF1-201ENST00000389629 IGF1P05019 195 aa10.9□□□□□ -0.67
RTF1-201ENST00000389629 NEXN-AS1Q8NBZ9 246 aa10.9□□□□□ -0.67
RTF1-201ENST00000389629 LENEPQ9Y5L5 61 aa10.9□□□□□ -0.67
RTF1-201ENST00000389629 LY6DQ14210 128 aa10.89□□□□□ -0.67
RTF1-201ENST00000389629 UBE2E2Q96LR5 201 aa10.89□□□□□ -0.67
RTF1-201ENST00000389629 BAALC-AS2P0C853 105 aa10.89□□□□□ -0.67
RTF1-201ENST00000389629 DEFB131AP59861 70 aa10.89□□□□□ -0.67
RTF1-201ENST00000389629 RPL36AP83881 106 aaKnown RBP10.89□□□□□ -0.67
RTF1-201ENST00000389629 ZNF415Q09FC8 603 aa10.89□□□□□ -0.67
RTF1-201ENST00000389629 RPL36ALQ969Q0 106 aaKnown RBP10.89□□□□□ -0.67
RTF1-201ENST00000389629 C16orf54Q6UWD8 224 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 C9orf47Q6ZRZ4 202 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 C11orf44Q8N8P7 122 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 A0A0J9YY99 117 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 TINCRA0A1B0GVN0 87 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 SMAD5-AS1Q9Y6J3 95 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 ACACBO00763 2458 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 CENPVL3A0A0U1RRI6 287 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 A0A1W2PRX2 142 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 PFN2P35080 140 aa10.88□□□□□ -0.67
RTF1-201ENST00000389629 HOXD3P31249 432 aaPredicted RBP10.87□□□□□ -0.67
RTF1-201ENST00000389629 Q9H8V8 135 aa10.87□□□□□ -0.67
RTF1-201ENST00000389629 DNAH14Q0VDD8 3507 aa10.87□□□□□ -0.67
RTF1-201ENST00000389629 TNRC6BQ9UPQ9 1833 aaKnown RBP10.87□□□□□ -0.67
RTF1-201ENST00000389629 TRACP01848 142 aa10.87□□□□□ -0.67
RTF1-201ENST00000389629 SRSF2Q01130 221 aaKnown RBP10.87□□□□□ -0.67
RTF1-201ENST00000389629 STHQ8IWL8 128 aa10.87□□□□□ -0.67
RTF1-201ENST00000389629 PIP4P2Q8N4L2 257 aa10.87□□□□□ -0.67
RTF1-201ENST00000389629 TRAV4A0A0B4J268 109 aa10.86□□□□□ -0.67
RTF1-201ENST00000389629 RHOHQ15669 191 aa10.86□□□□□ -0.67
RTF1-201ENST00000389629 MYO9AB2RTY4 2548 aa10.86□□□□□ -0.67
RTF1-201ENST00000389629 TRBV7-3A0A075B6L6 115 aa10.86□□□□□ -0.67
RTF1-201ENST00000389629 TMEM86BQ8N661 226 aa10.86□□□□□ -0.67
RTF1-201ENST00000389629 IGHV7-4-1A0A0J9YVY3 117 aa10.86□□□□□ -0.67
RTF1-201ENST00000389629 IGHV1-69P01742 117 aa10.86□□□□□ -0.67
RTF1-201ENST00000389629 ZFP36P26651 326 aaKnown RBP10.86□□□□□ -0.67
RTF1-201ENST00000389629 TRGV4A0A0C4DH28 118 aa10.86□□□□□ -0.67
RTF1-201ENST00000389629 CCDC179H3BU77 68 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 ZNRF2Q8NHG8 242 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 K7ENP7 123 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 SLC25A29Q8N8R3 303 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 TIMM17AQ99595 171 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 ADAMTS20P59510 1910 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 TRANK1O15050 2925 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 LINC01548A6NM66 108 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 C6orf226Q5I0X4 101 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 C11orf21Q9P2W6 132 aa10.85□□□□□ -0.67
RTF1-201ENST00000389629 RHODO00212 210 aa10.84□□□□□ -0.67
RTF1-201ENST00000389629 SOCS3O14543 225 aa10.84□□□□□ -0.67
RTF1-201ENST00000389629 CEMP1Q6PRD7 247 aaPredicted RBP10.84□□□□□ -0.67
RTF1-201ENST00000389629 IGKV3D-7A0A0C4DH55 119 aa10.84□□□□□ -0.67
RTF1-201ENST00000389629 LGALS9O00182 355 aa10.84□□□□□ -0.67
RTF1-201ENST00000389629 CFAP161Q6P656 301 aa10.84□□□□□ -0.67
RTF1-201ENST00000389629 NRACQ8N912 160 aa10.84□□□□□ -0.67
RTF1-201ENST00000389629 LY6LH3BQJ8 138 aa10.83□□□□□ -0.68
RTF1-201ENST00000389629 Q6ZS46 218 aa10.83□□□□□ -0.68
RTF1-201ENST00000389629 CCDC140Q96MF4 163 aa10.83□□□□□ -0.68
RTF1-201ENST00000389629 Q6ZQT7 251 aa10.83□□□□□ -0.68
RTF1-201ENST00000389629 XCL2Q9UBD3 114 aa10.83□□□□□ -0.68
RTF1-201ENST00000389629 LAMTOR3Q9UHA4 124 aa10.83□□□□□ -0.68
RTF1-201ENST00000389629 UNQ9165/PRO28630Q6UXU0 137 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms