RNA–Protein interactions for RNA: ENST00000374512.7

PHF1-201, Transcript of PHD finger protein 1, humanhuman

TSL 1 (best) BASIC

Gene PHF1, Length 2,224 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-201ENST00000374512 PRO0461Q9UI25 63 aa13.42□□□□□ -0.26
PHF1-201ENST00000374512 MUC4Q99102 2169 aa13.42□□□□□ -0.26
PHF1-201ENST00000374512 B4DSR2 109 aa13.41□□□□□ -0.26
PHF1-201ENST00000374512 SRSF9Q13242 221 aaKnown RBP eCLIP13.41□□□□□ -0.26
PHF1-201ENST00000374512 ACACBO00763 2458 aa13.41□□□□□ -0.26
PHF1-201ENST00000374512 IGKV3-7A0A075B6H7 116 aa13.41□□□□□ -0.26
PHF1-201ENST00000374512 C11orf86A6NJI1 115 aa13.41□□□□□ -0.26
PHF1-201ENST00000374512 DSCR9P59020 149 aa13.4□□□□□ -0.26
PHF1-201ENST00000374512 MRPL16Q9NX20 251 aaKnown RBP13.4□□□□□ -0.26
PHF1-201ENST00000374512 PGPEP1Q9NXJ5 209 aa13.4□□□□□ -0.26
PHF1-201ENST00000374512 CD7P09564 240 aa13.4□□□□□ -0.26
PHF1-201ENST00000374512 LYRM7Q5U5X0 104 aa13.4□□□□□ -0.26
PHF1-201ENST00000374512 LCNL1Q6ZST4 164 aa13.4□□□□□ -0.26
PHF1-201ENST00000374512 SYT8Q8NBV8 401 aa13.4□□□□□ -0.26
PHF1-201ENST00000374512 C9orf85Q96MD7 179 aa13.4□□□□□ -0.26
PHF1-201ENST00000374512 SIGMAR1Q99720 223 aa13.4□□□□□ -0.26
PHF1-201ENST00000374512 SDHAF1A6NFY7 115 aa13.39□□□□□ -0.27
PHF1-201ENST00000374512 COL12A1Q99715 3063 aa13.39□□□□□ -0.27
PHF1-201ENST00000374512 TMEM89A2RUT3 159 aa13.39□□□□□ -0.27
PHF1-201ENST00000374512 GATA3P23771 443 aa13.39□□□□□ -0.27
PHF1-201ENST00000374512 AMTNQ6UX39 209 aa13.39□□□□□ -0.27
PHF1-201ENST00000374512 DLX4Q92988 240 aaPredicted RBP13.39□□□□□ -0.27
PHF1-201ENST00000374512 SPG11Q96JI7 2443 aa13.38□□□□□ -0.27
PHF1-201ENST00000374512 F5H697 171 aa13.38□□□□□ -0.27
PHF1-201ENST00000374512 AVPP01185 164 aa13.38□□□□□ -0.27
PHF1-201ENST00000374512 ETDBQ3ZM63 59 aa13.38□□□□□ -0.27
PHF1-201ENST00000374512 ZNF876PQ49A33 203 aa13.38□□□□□ -0.27
PHF1-201ENST00000374512 PLEKHB2Q96CS7 222 aa13.38□□□□□ -0.27
PHF1-201ENST00000374512 SPATA25Q9BR10 227 aa13.38□□□□□ -0.27
PHF1-201ENST00000374512 USP9XQ93008 2570 aaPredicted RBP13.38□□□□□ -0.27
PHF1-201ENST00000374512 A0A0J9YY99 117 aa13.37□□□□□ -0.27
PHF1-201ENST00000374512 GAGE12HA6NDE8 117 aa13.37□□□□□ -0.27
PHF1-201ENST00000374512 RHOHQ15669 191 aa13.37□□□□□ -0.27
PHF1-201ENST00000374512 ATP6V0E2Q8NHE4 81 aa13.37□□□□□ -0.27
PHF1-201ENST00000374512 TRAV12-3A0A0B4J271 114 aa13.37□□□□□ -0.27
PHF1-201ENST00000374512 IGHV3-16A0A0C4DH30 117 aa13.37□□□□□ -0.27
PHF1-201ENST00000374512 SRD5A1P18405 259 aa13.36□□□□□ -0.27
PHF1-201ENST00000374512 PSMB8P28062 276 aa13.36□□□□□ -0.27
PHF1-201ENST00000374512 SNRPD3P62318 126 aaKnown RBP13.36□□□□□ -0.27
PHF1-201ENST00000374512 JPT2Q9H910 190 aa13.36□□□□□ -0.27
PHF1-201ENST00000374512 A0A087WWL8 130 aa13.36□□□□□ -0.27
PHF1-201ENST00000374512 NSUN5P1Q3KNT7 163 aa13.36□□□□□ -0.27
PHF1-201ENST00000374512 KLHL30-AS1Q8NEE0 82 aa13.36□□□□□ -0.27
PHF1-201ENST00000374512 SPAG8Q99932 426 aaPredicted RBP13.36□□□□□ -0.27
PHF1-201ENST00000374512 VPS13CQ709C8 3753 aa13.35□□□□□ -0.27
PHF1-201ENST00000374512 SH2D6Q7Z4S9 175 aa13.35□□□□□ -0.27
PHF1-201ENST00000374512 NFE4Q86UQ8 179 aa13.35□□□□□ -0.27
PHF1-201ENST00000374512 SLC25A29Q8N8R3 303 aa13.35□□□□□ -0.27
PHF1-201ENST00000374512 NRGNQ92686 78 aa13.35□□□□□ -0.27
PHF1-201ENST00000374512 TSSC4Q9Y5U2 329 aaPredicted RBP13.35□□□□□ -0.27
PHF1-201ENST00000374512 CELSR1Q9NYQ6 3014 aa13.35□□□□□ -0.27
PHF1-201ENST00000374512 A0A0J9YX75 114 aa13.35□□□□□ -0.27
PHF1-201ENST00000374512 UBE2D3P61077 147 aa13.35□□□□□ -0.27
PHF1-201ENST00000374512 UBE2D2P62837 147 aa13.35□□□□□ -0.27
PHF1-201ENST00000374512 RPL39P62891 51 aaKnown RBP13.35□□□□□ -0.27
PHF1-201ENST00000374512 TRPT1Q86TN4 253 aaKnown RBP13.35□□□□□ -0.27
PHF1-201ENST00000374512 FLNCQ14315 2725 aa13.34□□□□□ -0.27
PHF1-201ENST00000374512 M0QY20 66 aa13.34□□□□□ -0.27
PHF1-201ENST00000374512 CFAP126Q5VTH2 177 aa13.34□□□□□ -0.27
PHF1-201ENST00000374512 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.34□□□□□ -0.272e-43■■■□□ 15
PHF1-201ENST00000374512 TSPAN13O95857 204 aa13.33□□□□□ -0.27
PHF1-201ENST00000374512 PRB1P04280 392 aa13.33□□□□□ -0.27
PHF1-201ENST00000374512 NDUFA11Q86Y39 141 aa13.33□□□□□ -0.27
PHF1-201ENST00000374512 RNF152Q8N8N0 203 aa13.33□□□□□ -0.27
PHF1-201ENST00000374512 AZU1P20160 251 aa13.33□□□□□ -0.28
PHF1-201ENST00000374512 TMEM95Q3KNT9 176 aa13.33□□□□□ -0.28
PHF1-201ENST00000374512 TMEM170BQ5T4T1 132 aa13.33□□□□□ -0.28
PHF1-201ENST00000374512 TRBV20-1A0A075B6N2 111 aa13.32□□□□□ -0.28
PHF1-201ENST00000374512 IGHV1OR15-1A0A075B7D0 117 aa13.32□□□□□ -0.28
PHF1-201ENST00000374512 IGHV3-30P01768 117 aa13.32□□□□□ -0.28
PHF1-201ENST00000374512 IGHV3-30-5P0DP03 117 aa13.32□□□□□ -0.28
PHF1-201ENST00000374512 ZNRF2Q8NHG8 242 aa13.32□□□□□ -0.28
PHF1-201ENST00000374512 K7EQG2 157 aa13.32□□□□□ -0.28
PHF1-201ENST00000374512 LINC01356Q8N9X3 169 aa13.32□□□□□ -0.28
PHF1-201ENST00000374512 J3QQQ9 107 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 APOMO95445 188 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 IGHV4-59P01825 116 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 DEFB112Q30KQ8 113 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 C1QTNF4Q9BXJ3 329 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 ZNF688P0C7X2 276 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 EDN2P20800 178 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 ZNF56Q15929 161 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 FAM74A4Q5TZK3 123 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 Q8N1Y9 231 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 GTSF1LQ9H1H1 148 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 MDFICQ9P1T7 246 aa13.31□□□□□ -0.28
PHF1-201ENST00000374512 ZNF256Q9Y2P7 627 aaPredicted RBP13.31□□□□□ -0.28
PHF1-201ENST00000374512 LGALS3P17931 250 aaKnown RBP13.3□□□□□ -0.28
PHF1-201ENST00000374512 EMP1P54849 157 aa13.3□□□□□ -0.28
PHF1-201ENST00000374512 BBC3Q96PG8 261 aaPredicted RBP13.3□□□□□ -0.28
PHF1-201ENST00000374512 AMELXQ99217 191 aa13.3□□□□□ -0.28
PHF1-201ENST00000374512 LOC107984156A0A0G2JMH3 177 aa13.29□□□□□ -0.28
PHF1-201ENST00000374512 LEPROTO15243 131 aa13.29□□□□□ -0.28
PHF1-201ENST00000374512 ARL17AQ8IVW1 177 aa13.29□□□□□ -0.28
PHF1-201ENST00000374512 I3L3M4 83 aa13.29□□□□□ -0.28
PHF1-201ENST00000374512 TSPEAR-AS2P59090 65 aa13.29□□□□□ -0.28
PHF1-201ENST00000374512 FOXI1Q12951 378 aa13.29□□□□□ -0.28
PHF1-201ENST00000374512 C20orf203Q8NBC4 194 aa13.29□□□□□ -0.28
PHF1-201ENST00000374512 EDA2RQ9HAV5 297 aa13.29□□□□□ -0.28
PHF1-201ENST00000374512 CSPG4Q6UVK1 2322 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms