RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 C10orf91Q5T1B1 145 aa15.47■□□□□ 0.07
SHMT1-203ENST00000354098 ZFP2Q6ZN57 461 aa15.47■□□□□ 0.07
SHMT1-203ENST00000354098 CNFNQ9BYD5 112 aa15.47■□□□□ 0.07
SHMT1-203ENST00000354098 NUDT3O95989 172 aa15.46■□□□□ 0.07
SHMT1-203ENST00000354098 C14orf178Q8N769 122 aaPredicted RBP15.46■□□□□ 0.07
SHMT1-203ENST00000354098 FAM231BA6NCW3 169 aa15.45■□□□□ 0.06
SHMT1-203ENST00000354098 CIDEAO60543 219 aa15.45■□□□□ 0.06
SHMT1-203ENST00000354098 TCTAP57738 103 aa15.45■□□□□ 0.06
SHMT1-203ENST00000354098 SLAQ13239 276 aa15.45■□□□□ 0.06
SHMT1-203ENST00000354098 WDR73Q6P4I2 378 aa15.45■□□□□ 0.06
SHMT1-203ENST00000354098 SLC7A5P1Q8MH63 180 aa15.45■□□□□ 0.06
SHMT1-203ENST00000354098 SLC25A29Q8N8R3 303 aa15.45■□□□□ 0.06
SHMT1-203ENST00000354098 TWIST1Q15672 202 aa15.44■□□□□ 0.06
SHMT1-203ENST00000354098 SMIM27A0A1W2PRY6 76 aa15.44■□□□□ 0.06
SHMT1-203ENST00000354098 H3BNG1 76 aa15.44■□□□□ 0.06
SHMT1-203ENST00000354098 NUP35Q8NFH5 326 aa15.44■□□□□ 0.06
SHMT1-203ENST00000354098 KIF25-AS1Q9Y6Z4 181 aa15.44■□□□□ 0.06
SHMT1-203ENST00000354098 LOC100131303A0A0U1RQF7 123 aa15.43■□□□□ 0.06
SHMT1-203ENST00000354098 RHODO00212 210 aa15.43■□□□□ 0.06
SHMT1-203ENST00000354098 C15orf53Q8NAA6 179 aa15.43■□□□□ 0.06
SHMT1-203ENST00000354098 AP1S3Q96PC3 154 aa15.43■□□□□ 0.06
SHMT1-203ENST00000354098 CARHSP1Q9Y2V2 147 aaKnown RBP15.43■□□□□ 0.06
SHMT1-203ENST00000354098 PPP1R2P9O14990 202 aa15.42■□□□□ 0.06
SHMT1-203ENST00000354098 MT-ND4LP03901 98 aa15.42■□□□□ 0.06
SHMT1-203ENST00000354098 EVI2AP22794 236 aa15.42■□□□□ 0.06
SHMT1-203ENST00000354098 NAT8BQ9UHF3 227 aa15.42■□□□□ 0.06
SHMT1-203ENST00000354098 TRBV6-4A0A1B0GX49 114 aa15.41■□□□□ 0.06
SHMT1-203ENST00000354098 ANAPC16Q96DE5 110 aa15.41■□□□□ 0.06
SHMT1-203ENST00000354098 LYSTQ99698 3801 aa15.41■□□□□ 0.06
SHMT1-203ENST00000354098 GYPEP15421 78 aa15.41■□□□□ 0.06
SHMT1-203ENST00000354098 LINC00315P59091 139 aa15.41■□□□□ 0.06
SHMT1-203ENST00000354098 Q9UF83 564 aa15.41■□□□□ 0.06
SHMT1-203ENST00000354098 A0A096LPF7 62 aa15.4■□□□□ 0.06
SHMT1-203ENST00000354098 A0A1B0GUT8 65 aa15.4■□□□□ 0.06
SHMT1-203ENST00000354098 K7EQD1 137 aa15.39■□□□□ 0.05
SHMT1-203ENST00000354098 TRGC1P0CF51 173 aa15.39■□□□□ 0.05
SHMT1-203ENST00000354098 SMIM17P0DL12 118 aa15.39■□□□□ 0.05
SHMT1-203ENST00000354098 BORCS7Q96B45 105 aa15.39■□□□□ 0.05
SHMT1-203ENST00000354098 RHOHQ15669 191 aa15.38■□□□□ 0.05
SHMT1-203ENST00000354098 ZNF56Q15929 161 aa15.38■□□□□ 0.05
SHMT1-203ENST00000354098 ICOSQ9Y6W8 199 aa15.38■□□□□ 0.05
SHMT1-203ENST00000354098 P0DMU3 169 aa15.38■□□□□ 0.05
SHMT1-203ENST00000354098 FAM231AP0DMU4 169 aa15.38■□□□□ 0.05
SHMT1-203ENST00000354098 FAM231CP0DMU5 169 aa15.38■□□□□ 0.05
SHMT1-203ENST00000354098 PRADC1Q9BSG0 188 aa15.38■□□□□ 0.05
SHMT1-203ENST00000354098 F5H697 171 aa15.37■□□□□ 0.05
SHMT1-203ENST00000354098 MGPP08493 103 aa15.37■□□□□ 0.05
SHMT1-203ENST00000354098 FAM3BP58499 235 aaPredicted RBP15.37■□□□□ 0.05
SHMT1-203ENST00000354098 RAB4BP61018 213 aa15.37■□□□□ 0.05
SHMT1-203ENST00000354098 APOC3P02656 99 aa15.36■□□□□ 0.05
SHMT1-203ENST00000354098 CLRN3Q8NCR9 226 aa15.36■□□□□ 0.05
SHMT1-203ENST00000354098 DPH3P1Q9H4G8 78 aa15.36■□□□□ 0.05
SHMT1-203ENST00000354098 MRPL23Q16540 153 aaKnown RBP15.35■□□□□ 0.05
SHMT1-203ENST00000354098 LINC00476Q8WZB0 136 aa15.35■□□□□ 0.05
SHMT1-203ENST00000354098 C7orf77A4D0Y5 90 aa15.35■□□□□ 0.05
SHMT1-203ENST00000354098 LY6G6CO95867 125 aa15.35■□□□□ 0.05
SHMT1-203ENST00000354098 RIGQ13278 110 aa15.35■□□□□ 0.05
SHMT1-203ENST00000354098 SRIP30626 198 aa15.34■□□□□ 0.05
SHMT1-203ENST00000354098 LGALS9CQ6DKI2 356 aa15.34■□□□□ 0.05
SHMT1-203ENST00000354098 ESRGQ1W209 222 aa15.33■□□□□ 0.04
SHMT1-203ENST00000354098 CTDSP1Q9GZU7 261 aa15.33■□□□□ 0.04
SHMT1-203ENST00000354098 GAGE12JA6NER3 117 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 GAGE1Q13065 139 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 GAGE4Q13068 117 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 GAGE5Q13069 117 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 GAGE13Q4V321 117 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 SUMO4Q6EEV6 95 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 MRPL54Q6P161 138 aaKnown RBP15.32■□□□□ 0.04
SHMT1-203ENST00000354098 SMIM15Q7Z3B0 74 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 LCE6AA0A183 80 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 NDUFA5Q16718 116 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 NEGR1Q7Z3B1 354 aa15.32■□□□□ 0.04
SHMT1-203ENST00000354098 KMT2CQ8NEZ4 4911 aaKnown RBP15.31■□□□□ 0.04
SHMT1-203ENST00000354098 CAMPP49913 170 aa15.31■□□□□ 0.04
SHMT1-203ENST00000354098 TMEM191AQ9H0A3 160 aa15.31■□□□□ 0.04
SHMT1-203ENST00000354098 RPS10P5Q9NQ39 176 aa15.31■□□□□ 0.04
SHMT1-203ENST00000354098 LINC00588Q9Y4M8 146 aa15.31■□□□□ 0.04
SHMT1-203ENST00000354098 M0QY20 66 aa15.3■□□□□ 0.04
SHMT1-203ENST00000354098 RHEBQ15382 184 aa15.3■□□□□ 0.04
SHMT1-203ENST00000354098 TRAV26-2A0A0B4J265 109 aa15.29■□□□□ 0.04
SHMT1-203ENST00000354098 LINC00694P0DN24 101 aa15.29■□□□□ 0.04
SHMT1-203ENST00000354098 LYPD5Q6UWN5 251 aa15.29■□□□□ 0.04
SHMT1-203ENST00000354098 UBE2DNLQ8IWF7 75 aa15.29■□□□□ 0.04
SHMT1-203ENST00000354098 SVBPQ8N300 66 aa15.29■□□□□ 0.04
SHMT1-203ENST00000354098 NEXN-AS1Q8NBZ9 246 aa15.29■□□□□ 0.04
SHMT1-203ENST00000354098 ZNRF2Q8NHG8 242 aa15.29■□□□□ 0.04
SHMT1-203ENST00000354098 TRBV10-1A0A0K0K1A3 114 aa15.28■□□□□ 0.04
SHMT1-203ENST00000354098 A0A1B0GXF2 115 aa15.28■□□□□ 0.04
SHMT1-203ENST00000354098 CCL18P55774 89 aa15.28■□□□□ 0.04
SHMT1-203ENST00000354098 A0A087WWC5 75 aa15.28■□□□□ 0.04
SHMT1-203ENST00000354098 AMN1Q8IY45 258 aa15.28■□□□□ 0.04
SHMT1-203ENST00000354098 GATD1Q8NB37 220 aa15.28■□□□□ 0.04
SHMT1-203ENST00000354098 IMMP2LQ96T52 175 aa15.28■□□□□ 0.04
SHMT1-203ENST00000354098 TMEM242Q9NWH2 141 aa15.28■□□□□ 0.04
SHMT1-203ENST00000354098 ALMS1Q8TCU4 4167 aa15.28■□□□□ 0.04
SHMT1-203ENST00000354098 SNAPINO95295 136 aa15.27■□□□□ 0.03
SHMT1-203ENST00000354098 HBBP68871 147 aa15.27■□□□□ 0.03
SHMT1-203ENST00000354098 RNF185Q96GF1 192 aa15.27■□□□□ 0.03
SHMT1-203ENST00000354098 A0A1B0GW15 77 aa15.26■□□□□ 0.03
SHMT1-203ENST00000354098 ATP6V0E2Q8NHE4 81 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms