RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 TCL1AP56279 114 aa10.17□□□□□ -0.78
USP3-221ENST00000561442 ZNF415Q09FC8 603 aa10.17□□□□□ -0.78
USP3-221ENST00000561442 IBA57Q5T440 356 aaKnown RBP10.17□□□□□ -0.78
USP3-221ENST00000561442 KCNIP4Q6PIL6 250 aa10.17□□□□□ -0.78
USP3-221ENST00000561442 Q6ZTI0 123 aa10.17□□□□□ -0.78
USP3-221ENST00000561442 TRGV1A0A0A0MS02 117 aa10.16□□□□□ -0.78
USP3-221ENST00000561442 TYMSP04818 313 aa10.16□□□□□ -0.78
USP3-221ENST00000561442 RPS10P46783 165 aaKnown RBP10.16□□□□□ -0.78
USP3-221ENST00000561442 CRIP1P50238 77 aa10.16□□□□□ -0.78
USP3-221ENST00000561442 DAZ2Q13117 558 aaKnown RBP10.16□□□□□ -0.78
USP3-221ENST00000561442 ZNF674Q2M3X9 581 aa10.16□□□□□ -0.78
USP3-221ENST00000561442 TDRG1Q3Y452 100 aa10.16□□□□□ -0.78
USP3-221ENST00000561442 BAGE2Q86Y30 109 aa10.16□□□□□ -0.78
USP3-221ENST00000561442 FAM210BQ96KR6 192 aa10.16□□□□□ -0.78
USP3-221ENST00000561442 TRAV9-1A0A075B6T8 112 aa10.15□□□□□ -0.78
USP3-221ENST00000561442 IGHV3-16A0A0C4DH30 117 aa10.15□□□□□ -0.78
USP3-221ENST00000561442 SH2D1AO60880 128 aa10.15□□□□□ -0.78
USP3-221ENST00000561442 KCNS1Q96KK3 526 aa10.15□□□□□ -0.78
USP3-221ENST00000561442 MRPL16Q9NX20 251 aaKnown RBP10.15□□□□□ -0.78
USP3-221ENST00000561442 FABP5P3A8MUU1 101 aa10.14□□□□□ -0.79
USP3-221ENST00000561442 FAM162BQ5T6X4 162 aa10.14□□□□□ -0.79
USP3-221ENST00000561442 COX8CQ7Z4L0 72 aa10.14□□□□□ -0.79
USP3-221ENST00000561442 LINC01551Q86U37 167 aa10.14□□□□□ -0.79
USP3-221ENST00000561442 LINC00612Q8N6U2 182 aa10.14□□□□□ -0.79
USP3-221ENST00000561442 VPS13DQ5THJ4 4388 aa10.14□□□□□ -0.79
USP3-221ENST00000561442 TRGV2A0A075B6R0 118 aa10.13□□□□□ -0.79
USP3-221ENST00000561442 IGHV4-4A0A075B6R2 117 aa10.13□□□□□ -0.79
USP3-221ENST00000561442 F5H768 121 aa10.13□□□□□ -0.79
USP3-221ENST00000561442 SPINK4O60575 86 aa10.13□□□□□ -0.79
USP3-221ENST00000561442 ORM1P02763 201 aa10.13□□□□□ -0.79
USP3-221ENST00000561442 ATP5G1P05496 136 aa10.13□□□□□ -0.79
USP3-221ENST00000561442 FAM3BP58499 235 aaPredicted RBP10.13□□□□□ -0.79
USP3-221ENST00000561442 CENPWQ5EE01 88 aa10.13□□□□□ -0.79
USP3-221ENST00000561442 LINC00518Q8N0U6 118 aa10.13□□□□□ -0.79
USP3-221ENST00000561442 TMSB15BA0A087X1C1 80 aa10.12□□□□□ -0.79
USP3-221ENST00000561442 IGKV3D-20A0A0C4DH25 116 aa10.12□□□□□ -0.79
USP3-221ENST00000561442 CXCL1P09341 107 aa10.12□□□□□ -0.79
USP3-221ENST00000561442 RPL19P84098 196 aaKnown RBP10.12□□□□□ -0.79
USP3-221ENST00000561442 PRR27Q6MZM9 219 aa10.12□□□□□ -0.79
USP3-221ENST00000561442 ZFP82Q8N141 532 aa10.12□□□□□ -0.79
USP3-221ENST00000561442 MLST8Q9BVC4 326 aa10.12□□□□□ -0.79
USP3-221ENST00000561442 TGIF2-C20orf24A0A0A6YYL0 155 aa10.11□□□□□ -0.79
USP3-221ENST00000561442 IGHV3-53P01767 116 aa10.11□□□□□ -0.79
USP3-221ENST00000561442 SMIM6P0DI80 62 aa10.11□□□□□ -0.79
USP3-221ENST00000561442 MGST1P10620 155 aaKnown RBP10.11□□□□□ -0.79
USP3-221ENST00000561442 GNG4P50150 75 aa10.11□□□□□ -0.79
USP3-221ENST00000561442 SNRPEP62304 92 aaKnown RBP10.11□□□□□ -0.79
USP3-221ENST00000561442 SPXQ9BT56 116 aa10.11□□□□□ -0.79
USP3-221ENST00000561442 URGCP-MRPS24S4R325 110 aa10.11□□□□□ -0.79
USP3-221ENST00000561442 GRIFINA4D1Z8 144 aa10.1□□□□□ -0.79
USP3-221ENST00000561442 PGPEP1LA6NFU8 196 aa10.1□□□□□ -0.79
USP3-221ENST00000561442 OR5I1Q13606 314 aa10.1□□□□□ -0.79
USP3-221ENST00000561442 LGALS9BQ3B8N2 356 aa10.1□□□□□ -0.79
USP3-221ENST00000561442 SMIM12Q96EX1 92 aa10.1□□□□□ -0.79
USP3-221ENST00000561442 SFRP2Q96HF1 295 aa10.1□□□□□ -0.79
USP3-221ENST00000561442 APLNQ9ULZ1 77 aa10.1□□□□□ -0.79
USP3-221ENST00000561442 TRBV20OR9-2A0A075B6H5 130 aa10.09□□□□□ -0.79
USP3-221ENST00000561442 M0R2P5 195 aa10.09□□□□□ -0.79
USP3-221ENST00000561442 IGLV2-8P01709 118 aa10.09□□□□□ -0.79
USP3-221ENST00000561442 RNASE3P12724 160 aaKnown RBP10.09□□□□□ -0.79
USP3-221ENST00000561442 HOXA5P20719 270 aa10.09□□□□□ -0.79
USP3-221ENST00000561442 S100A4P26447 101 aaKnown RBP10.09□□□□□ -0.79
USP3-221ENST00000561442 ASIPP42127 132 aa10.09□□□□□ -0.79
USP3-221ENST00000561442 AKR1D1P51857 326 aa10.09□□□□□ -0.79
USP3-221ENST00000561442 FABP9Q0Z7S8 132 aa10.09□□□□□ -0.79
USP3-221ENST00000561442 NDUFAF3Q9BU61 184 aa10.09□□□□□ -0.79
USP3-221ENST00000561442 RYR3Q15413 4870 aa10.09□□□□□ -0.79
USP3-221ENST00000561442 LCE6AA0A183 80 aa10.08□□□□□ -0.8
USP3-221ENST00000561442 H3BVH4 76 aa10.08□□□□□ -0.8
USP3-221ENST00000561442 LINC01559Q495D7 138 aa10.08□□□□□ -0.8
USP3-221ENST00000561442 COX19Q49B96 90 aa10.08□□□□□ -0.8
USP3-221ENST00000561442 OR10G8Q8NGN5 311 aa10.08□□□□□ -0.8
USP3-221ENST00000561442 C9orf85Q96MD7 179 aa10.08□□□□□ -0.8
USP3-221ENST00000561442 LY6G6CO95867 125 aa10.07□□□□□ -0.8
USP3-221ENST00000561442 TCTAP57738 103 aa10.07□□□□□ -0.8
USP3-221ENST00000561442 S100A12P80511 92 aa10.07□□□□□ -0.8
USP3-221ENST00000561442 LINC00476Q8WZB0 136 aa10.07□□□□□ -0.8
USP3-221ENST00000561442 RASL10AQ92737 203 aa10.07□□□□□ -0.8
USP3-221ENST00000561442 C18orf15Q96N68 181 aa10.07□□□□□ -0.8
USP3-221ENST00000561442 RYR2Q92736 4967 aa10.07□□□□□ -0.8
USP3-221ENST00000561442 TRAV26-1A0A087WT03 109 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 A0A0J9YY99 117 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST1H2BKO60814 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 TRGC2P03986 189 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST1H2BJP06899 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST1H2BOP23527 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST1H2BBP33778 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST1H2BDP58876 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST1H2BCP62807 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST2H2BEQ16778 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 ZNF876PQ49A33 203 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.06□□□□□ -0.8
USP3-221ENST00000561442 ZNF575Q86XF7 245 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST1H2BHQ93079 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST1H2BNQ99877 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 HIST1H2BMQ99879 126 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 OSTCQ9NRP0 149 aa10.06□□□□□ -0.8
USP3-221ENST00000561442 PHOX2AO14813 284 aa10.05□□□□□ -0.8
USP3-221ENST00000561442 NUDT3O95989 172 aa10.05□□□□□ -0.8
USP3-221ENST00000561442 ARMS2P0C7Q2 107 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms