RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 NPBQ8NG41 125 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 THADAQ6YHU6 1953 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 IGLV11-55A0A075B6I3 123 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 LY6HO94772 140 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 GATA3P23771 443 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 DEFB130BP0DP73 79 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 DEFB130AP0DP74 79 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 GDF5OSQ5U4N7 250 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 CRYGCP07315 174 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 C5orf47Q569G3 176 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 Q8N1Y9 231 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 SND1-IT1Q9HBX3 110 aa13.63□□□□□ -0.23
SYNE3-204ENST00000555759 LY6G6EA0A0G2JKS1 128 aa13.62□□□□□ -0.23
SYNE3-204ENST00000555759 LINC01619G3V211 115 aa13.62□□□□□ -0.23
SYNE3-204ENST00000555759 U3KQA8 63 aa13.62□□□□□ -0.23
SYNE3-204ENST00000555759 CRYGBP07316 175 aa13.62□□□□□ -0.23
SYNE3-204ENST00000555759 C9orf47Q6ZRZ4 202 aa13.62□□□□□ -0.23
SYNE3-204ENST00000555759 THSD7BQ9C0I4 1608 aa13.61□□□□□ -0.23
SYNE3-204ENST00000555759 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.61□□□□□ -0.23
SYNE3-204ENST00000555759 IGKV2-29A2NJV5 120 aaPredicted RBP13.61□□□□□ -0.23
SYNE3-204ENST00000555759 ZNF295-AS1Q8N0V1 137 aa13.61□□□□□ -0.23
SYNE3-204ENST00000555759 NKAPP1Q8N9T2 125 aa13.61□□□□□ -0.23
SYNE3-204ENST00000555759 EML6Q6ZMW3 1958 aa13.6□□□□□ -0.23
SYNE3-204ENST00000555759 TANC1Q9C0D5 1861 aa13.6□□□□□ -0.23
SYNE3-204ENST00000555759 BUB3O43684 328 aa13.6□□□□□ -0.23
SYNE3-204ENST00000555759 C11orf44Q8N8P7 122 aa13.6□□□□□ -0.23
SYNE3-204ENST00000555759 SPTBN1Q01082 2364 aaKnown RBP13.6□□□□□ -0.23
SYNE3-204ENST00000555759 LOXL1Q08397 574 aaPredicted RBP13.6□□□□□ -0.23
SYNE3-204ENST00000555759 RUSC1-AS1Q66K80 236 aa13.6□□□□□ -0.23
SYNE3-204ENST00000555759 SPATA25Q9BR10 227 aa13.6□□□□□ -0.23
SYNE3-204ENST00000555759 MLST8Q9BVC4 326 aa13.6□□□□□ -0.23
SYNE3-204ENST00000555759 CTSGP08311 255 aa13.59□□□□□ -0.23
SYNE3-204ENST00000555759 C3orf56Q8N813 242 aa13.59□□□□□ -0.23
SYNE3-204ENST00000555759 HOXD3P31249 432 aaPredicted RBP13.59□□□□□ -0.23
SYNE3-204ENST00000555759 CLEC2BQ92478 149 aa13.59□□□□□ -0.23
SYNE3-204ENST00000555759 IGFL3Q6UXB1 125 aa13.58□□□□□ -0.24
SYNE3-204ENST00000555759 CTSZQ9UBR2 303 aa13.58□□□□□ -0.24
SYNE3-204ENST00000555759 ANAPC1Q9H1A4 1944 aa13.58□□□□□ -0.24
SYNE3-204ENST00000555759 NSUN5P1Q3KNT7 163 aa13.58□□□□□ -0.24
SYNE3-204ENST00000555759 RNF152Q8N8N0 203 aa13.58□□□□□ -0.24
SYNE3-204ENST00000555759 ABCA1O95477 2261 aa13.57□□□□□ -0.24
SYNE3-204ENST00000555759 RPL39P62891 51 aaKnown RBP13.57□□□□□ -0.24
SYNE3-204ENST00000555759 IGLV2-23P01705 113 aa13.57□□□□□ -0.24
SYNE3-204ENST00000555759 IGHV1-58A0A0C4DH39 117 aa13.57□□□□□ -0.24
SYNE3-204ENST00000555759 OPRPNQ99935 248 aaPredicted RBP13.57□□□□□ -0.24
SYNE3-204ENST00000555759 PLXNB3Q9ULL4 1909 aa13.57□□□□□ -0.24
SYNE3-204ENST00000555759 C16orf54Q6UWD8 224 aa13.57□□□□□ -0.24
SYNE3-204ENST00000555759 LINC01356Q8N9X3 169 aa13.57□□□□□ -0.24
SYNE3-204ENST00000555759 ZDBF2Q9HCK1 2354 aa13.56□□□□□ -0.24
SYNE3-204ENST00000555759 MSMBP08118 114 aa13.56□□□□□ -0.24
SYNE3-204ENST00000555759 POLEQ07864 2286 aa13.56□□□□□ -0.24
SYNE3-204ENST00000555759 ROS1P08922 2347 aa13.55□□□□□ -0.24
SYNE3-204ENST00000555759 CFHR3Q02985 330 aa13.55□□□□□ -0.24
SYNE3-204ENST00000555759 C3orf22Q8N5N4 141 aa13.55□□□□□ -0.24
SYNE3-204ENST00000555759 TEX22C9J3V5 150 aa13.55□□□□□ -0.24
SYNE3-204ENST00000555759 TRAV4A0A0B4J268 109 aa13.54□□□□□ -0.24
SYNE3-204ENST00000555759 ELANEP08246 267 aa13.54□□□□□ -0.24
SYNE3-204ENST00000555759 LINC00322Q6ZN03 302 aaPredicted RBP13.54□□□□□ -0.24
SYNE3-204ENST00000555759 MIAQ16674 131 aa13.54□□□□□ -0.24
SYNE3-204ENST00000555759 MRPL36Q9P0J6 103 aaKnown RBP13.54□□□□□ -0.24
SYNE3-204ENST00000555759 ZNF407Q9C0G0 2248 aa13.54□□□□□ -0.24
SYNE3-204ENST00000555759 SPRY2O43597 315 aa13.53□□□□□ -0.24
SYNE3-204ENST00000555759 IGKV1D-37A0A075B6S9 117 aa13.53□□□□□ -0.24
SYNE3-204ENST00000555759 TMEM61Q8N0U2 210 aa13.53□□□□□ -0.24
SYNE3-204ENST00000555759 COL4A3Q01955 1670 aa13.53□□□□□ -0.24
SYNE3-204ENST00000555759 U3KQE9 123 aa13.53□□□□□ -0.24
SYNE3-204ENST00000555759 PRAC2D3DTV9 90 aa13.53□□□□□ -0.24
SYNE3-204ENST00000555759 COX7B2Q8TF08 81 aa13.53□□□□□ -0.24
SYNE3-204ENST00000555759 OBSL1O75147 1896 aa13.53□□□□□ -0.24
SYNE3-204ENST00000555759 VSIG2Q96IQ7 327 aa13.53□□□□□ -0.24
SYNE3-204ENST00000555759 DAZ2Q13117 558 aaKnown RBP13.52□□□□□ -0.24
SYNE3-204ENST00000555759 DAZ4Q86SG3 579 aaKnown RBP13.52□□□□□ -0.24
SYNE3-204ENST00000555759 DAZ3Q9NR90 486 aaKnown RBP13.52□□□□□ -0.24
SYNE3-204ENST00000555759 IGHV7-81A0A0B4J1V7 117 aa13.52□□□□□ -0.24
SYNE3-204ENST00000555759 P0DMU3 169 aa13.52□□□□□ -0.24
SYNE3-204ENST00000555759 FAM231AP0DMU4 169 aa13.52□□□□□ -0.24
SYNE3-204ENST00000555759 FAM231CP0DMU5 169 aa13.52□□□□□ -0.24
SYNE3-204ENST00000555759 FUSP35637 526 aaKnown RBP eCLIP13.52□□□□□ -0.24
SYNE3-204ENST00000555759 IGLC6P0CF74 106 aa13.52□□□□□ -0.25
SYNE3-204ENST00000555759 RITA1Q96K30 269 aa13.52□□□□□ -0.25
SYNE3-204ENST00000555759 TP73-AS1Q9UF72 201 aa13.52□□□□□ -0.25
SYNE3-204ENST00000555759 C2orf91Q6ZV80 131 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 C20orf203Q8NBC4 194 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 FAM215AQ9Y5M1 114 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 PDE6GP18545 87 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 PRSS33Q8NF86 280 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 COL4A6Q14031 1691 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 LECT2O14960 151 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 IGHV3-30-3P0DP02 117 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 IMUPQ9GZP8 106 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 MDFICQ9P1T7 246 aa13.51□□□□□ -0.25
SYNE3-204ENST00000555759 HOXB4P17483 251 aaPredicted RBP13.5□□□□□ -0.25
SYNE3-204ENST00000555759 DAD1P61803 113 aa13.5□□□□□ -0.25
SYNE3-204ENST00000555759 TEX49A0A1B0GTD5 131 aa13.5□□□□□ -0.25
SYNE3-204ENST00000555759 COX7A2LO14548 114 aa13.5□□□□□ -0.25
SYNE3-204ENST00000555759 Q6ZPA2 131 aa13.5□□□□□ -0.25
SYNE3-204ENST00000555759 NEXN-AS1Q8NBZ9 246 aa13.5□□□□□ -0.25
SYNE3-204ENST00000555759 U3KQK5 164 aa13.5□□□□□ -0.25
SYNE3-204ENST00000555759 TMEM256-PLSCR3K7ERE1 68 aa13.5□□□□□ -0.25
SYNE3-204ENST00000555759 DAND5Q8N907 189 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms