RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 GAGE4Q13068 117 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 A0A087WX48 190 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 NSUN5P1Q3KNT7 163 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 KLHL30-AS1Q8NEE0 82 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 IGHV3-73A0A0B4J1V6 119 aa12.73□□□□□ -0.37
CCDC88B-209ENST00000494080 C8orf86Q6ZUL3 223 aa12.73□□□□□ -0.37
CCDC88B-209ENST00000494080 K7EIM0 57 aa12.73□□□□□ -0.37
CCDC88B-209ENST00000494080 VCYO14598 125 aa12.73□□□□□ -0.37
CCDC88B-209ENST00000494080 SMIM2Q9BVW6 85 aa12.73□□□□□ -0.37
CCDC88B-209ENST00000494080 C19orf71A6NCJ1 209 aa12.73□□□□□ -0.37
CCDC88B-209ENST00000494080 TP53TG1Q9Y2A0 90 aa12.73□□□□□ -0.37
CCDC88B-209ENST00000494080 ZFP36P26651 326 aaKnown RBP12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 DAZAP2Q15038 168 aaPredicted RBP12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 SLC25A20O43772 301 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 A0A0C4DFX4 3053 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 TRAV8-3A0A0A6YYJ7 113 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 FGF6P10767 208 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 Q8N7P7 452 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 Q96MF0 132 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 PRO1854Q9UHT4 67 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 A0A087WWL8 130 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 IGHV7-81A0A0B4J1V7 117 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 NEGR1Q7Z3B1 354 aa12.72□□□□□ -0.37
CCDC88B-209ENST00000494080 IGLV2-23P01705 113 aa12.71□□□□□ -0.37
CCDC88B-209ENST00000494080 GATA3P23771 443 aa12.71□□□□□ -0.37
CCDC88B-209ENST00000494080 PLEKHB2Q96CS7 222 aa12.71□□□□□ -0.37
CCDC88B-209ENST00000494080 IGHV4-30-2A0A087WSY4 118 aa12.71□□□□□ -0.37
CCDC88B-209ENST00000494080 CENPVL3A0A0U1RRI6 287 aa12.71□□□□□ -0.38
CCDC88B-209ENST00000494080 I3L2K1 104 aa12.71□□□□□ -0.38
CCDC88B-209ENST00000494080 HCFC1P51610 2035 aa12.71□□□□□ -0.38
CCDC88B-209ENST00000494080 PRSS29PA6NIE9 313 aa12.71□□□□□ -0.38
CCDC88B-209ENST00000494080 IFITM1P13164 125 aa12.71□□□□□ -0.38
CCDC88B-209ENST00000494080 SPAG8Q99932 426 aaPredicted RBP12.71□□□□□ -0.38
CCDC88B-209ENST00000494080 HIGD1BQ9P298 99 aa12.71□□□□□ -0.38
CCDC88B-209ENST00000494080 UNC80Q8N2C7 3258 aa12.71□□□□□ -0.38
CCDC88B-209ENST00000494080 PRUNE2Q8WUY3 3088 aa12.7□□□□□ -0.38
CCDC88B-209ENST00000494080 ZNF876PQ49A33 203 aa12.7□□□□□ -0.38
CCDC88B-209ENST00000494080 NTN5Q8WTR8 489 aaPredicted RBP12.7□□□□□ -0.38
CCDC88B-209ENST00000494080 SPXQ9BT56 116 aa12.7□□□□□ -0.38
CCDC88B-209ENST00000494080 IGHV4-38-2P0DP08 117 aa12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 C16orf54Q6UWD8 224 aa12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 FBXL19-AS1Q494R0 122 aa12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 C20orf78Q9BR46 151 aa12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 LRRK2Q5S007 2527 aa12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 H3BMM0 161 aa12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 DEFB131AP59861 70 aa12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 UBE2WQ96B02 151 aa12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 BLCAPP62952 87 aa12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 EIF4EBP1Q13541 118 aaPredicted RBP12.69□□□□□ -0.38
CCDC88B-209ENST00000494080 IGHV4-59P01825 116 aa12.68□□□□□ -0.38
CCDC88B-209ENST00000494080 ABCA12Q86UK0 2595 aa12.68□□□□□ -0.38
CCDC88B-209ENST00000494080 TRGV11A0A075B6L2 103 aa12.68□□□□□ -0.38
CCDC88B-209ENST00000494080 FOXI1Q12951 378 aa12.68□□□□□ -0.38
CCDC88B-209ENST00000494080 TRBV7-9A0A0J9YWB2 115 aa12.67□□□□□ -0.38
CCDC88B-209ENST00000494080 ODF1Q14990 250 aa12.67□□□□□ -0.38
CCDC88B-209ENST00000494080 SPINK13Q1W4C9 94 aa12.67□□□□□ -0.38
CCDC88B-209ENST00000494080 UBE2E2Q96LR5 201 aa12.67□□□□□ -0.38
CCDC88B-209ENST00000494080 TEX22C9J3V5 150 aa12.67□□□□□ -0.38
CCDC88B-209ENST00000494080 PMVKQ15126 192 aa12.67□□□□□ -0.38
CCDC88B-209ENST00000494080 MLST8Q9BVC4 326 aa12.67□□□□□ -0.38
CCDC88B-209ENST00000494080 DEFB112Q30KQ8 113 aa12.67□□□□□ -0.38
CCDC88B-209ENST00000494080 Q8N9W7 124 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 PTH2Q96A98 100 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 DPH3Q96FX2 82 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 SPRY2O43597 315 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 DYNAPQ8N1N2 210 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 RNF183Q96D59 192 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 IGLV11-55A0A075B6I3 123 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 NDUFA4O00483 81 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 C2orf91Q6ZV80 131 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 F6UB75 175 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 NPBQ8NG41 125 aa12.66□□□□□ -0.38
CCDC88B-209ENST00000494080 IGKV1D-37A0A075B6S9 117 aa12.65□□□□□ -0.38
CCDC88B-209ENST00000494080 CTSGP08311 255 aa12.65□□□□□ -0.38
CCDC88B-209ENST00000494080 C9orf153Q5TBE3 101 aa12.65□□□□□ -0.38
CCDC88B-209ENST00000494080 TEN1Q86WV5 123 aa12.65□□□□□ -0.38
CCDC88B-209ENST00000494080 TMEM101Q96IK0 257 aa12.65□□□□□ -0.38
CCDC88B-209ENST00000494080 C15orf53Q8NAA6 179 aa12.65□□□□□ -0.38
CCDC88B-209ENST00000494080 TIMM21Q9BVV7 248 aa12.64□□□□□ -0.39
CCDC88B-209ENST00000494080 TRAV12-2A0A075B6T6 113 aa12.64□□□□□ -0.39
CCDC88B-209ENST00000494080 CFHR4Q92496 578 aa12.64□□□□□ -0.39
CCDC88B-209ENST00000494080 HERV-K104P63124 156 aa12.64□□□□□ -0.39
CCDC88B-209ENST00000494080 EDA2RQ9HAV5 297 aa12.64□□□□□ -0.39
CCDC88B-209ENST00000494080 J3QQQ9 107 aa12.63□□□□□ -0.39
CCDC88B-209ENST00000494080 IGHV3-53P01767 116 aa12.63□□□□□ -0.39
CCDC88B-209ENST00000494080 AGPAT4-IT1Q9H0P7 198 aa12.63□□□□□ -0.39
CCDC88B-209ENST00000494080 KNCNA6PVL3 124 aa12.63□□□□□ -0.39
CCDC88B-209ENST00000494080 KLK9Q9UKQ9 250 aa12.63□□□□□ -0.39
CCDC88B-209ENST00000494080 CFAP161Q6P656 301 aa12.63□□□□□ -0.39
CCDC88B-209ENST00000494080 RPL35AP18077 110 aaKnown RBP12.62□□□□□ -0.39
CCDC88B-209ENST00000494080 TCTEX1D4Q5JR98 221 aa12.62□□□□□ -0.39
CCDC88B-209ENST00000494080 LINC00574Q9H8X3 128 aa12.62□□□□□ -0.39
CCDC88B-209ENST00000494080 SDHAF1A6NFY7 115 aa12.62□□□□□ -0.39
CCDC88B-209ENST00000494080 C3orf56Q8N813 242 aa12.62□□□□□ -0.39
CCDC88B-209ENST00000494080 SPANXB1Q9NS25 103 aaPredicted RBP12.62□□□□□ -0.39
CCDC88B-209ENST00000494080 TRGV1A0A0A0MS02 117 aa12.62□□□□□ -0.39
CCDC88B-209ENST00000494080 C10orf105Q8TEF2 133 aa12.61□□□□□ -0.39
CCDC88B-209ENST00000494080 C19orf84I3L1E1 186 aa12.61□□□□□ -0.39
CCDC88B-209ENST00000494080 TRGV4A0A0C4DH28 118 aa12.61□□□□□ -0.39
CCDC88B-209ENST00000494080 FOXE3Q13461 319 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 153.3 ms