RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 C9orf85Q96MD7 179 aa13.91□□□□□ -0.18
USP39-218ENST00000493829 MRPL16Q9NX20 251 aaKnown RBP13.91□□□□□ -0.18
USP39-218ENST00000493829 TENM3Q9P273 2699 aa13.91□□□□□ -0.18
USP39-218ENST00000493829 M0R381 172 aa13.91□□□□□ -0.18
USP39-218ENST00000493829 TMEM88Q6PEY1 159 aa13.91□□□□□ -0.18
USP39-218ENST00000493829 CBLN2Q8IUK8 224 aa13.91□□□□□ -0.18
USP39-218ENST00000493829 PHLDA3Q9Y5J5 127 aa13.91□□□□□ -0.18
USP39-218ENST00000493829 DNLZQ5SXM8 178 aa13.9□□□□□ -0.18
USP39-218ENST00000493829 NUP35Q8NFH5 326 aa13.9□□□□□ -0.18
USP39-218ENST00000493829 IL17DQ8TAD2 202 aa13.9□□□□□ -0.18
USP39-218ENST00000493829 GFRA4Q9GZZ7 299 aa13.9□□□□□ -0.18
USP39-218ENST00000493829 NAT8BQ9UHF3 227 aa13.9□□□□□ -0.18
USP39-218ENST00000493829 A0A1W2PPQ1 181 aa13.89□□□□□ -0.19
USP39-218ENST00000493829 CTRLP40313 264 aa13.89□□□□□ -0.19
USP39-218ENST00000493829 TRGV1A0A0A0MS02 117 aa13.88□□□□□ -0.19
USP39-218ENST00000493829 SNAI2O43623 268 aa13.88□□□□□ -0.19
USP39-218ENST00000493829 SPANXN1Q5VSR9 72 aa13.88□□□□□ -0.19
USP39-218ENST00000493829 SCRT2Q9NQ03 307 aa13.88□□□□□ -0.19
USP39-218ENST00000493829 PRKDCP78527 4128 aaKnown RBP13.88□□□□□ -0.19
USP39-218ENST00000493829 A0A0J9YWU9 116 aa13.88□□□□□ -0.19
USP39-218ENST00000493829 OR5AL1P0C617 328 aa13.88□□□□□ -0.19
USP39-218ENST00000493829 MED14OSP0DP75 135 aa13.88□□□□□ -0.19
USP39-218ENST00000493829 Q6ZTI0 123 aa13.88□□□□□ -0.19
USP39-218ENST00000493829 TMEM242Q9NWH2 141 aa13.88□□□□□ -0.19
USP39-218ENST00000493829 S100PP25815 95 aa13.87□□□□□ -0.19
USP39-218ENST00000493829 ZNF876PQ49A33 203 aa13.87□□□□□ -0.19
USP39-218ENST00000493829 FAM222AQ5U5X8 452 aa13.87□□□□□ -0.19
USP39-218ENST00000493829 MRPL54Q6P161 138 aaKnown RBP13.87□□□□□ -0.19
USP39-218ENST00000493829 KCNIP4Q6PIL6 250 aa13.87□□□□□ -0.19
USP39-218ENST00000493829 BORCS7Q96B45 105 aa13.87□□□□□ -0.19
USP39-218ENST00000493829 SSBP4Q9BWG4 385 aaPredicted RBP13.87□□□□□ -0.19
USP39-218ENST00000493829 CELA1Q9UNI1 258 aa13.87□□□□□ -0.19
USP39-218ENST00000493829 FAM231BA6NCW3 169 aa13.86□□□□□ -0.19
USP39-218ENST00000493829 M0R2P5 195 aa13.86□□□□□ -0.19
USP39-218ENST00000493829 DMRTA1Q5VZB9 504 aa13.86□□□□□ -0.19
USP39-218ENST00000493829 SPXQ9BT56 116 aa13.86□□□□□ -0.19
USP39-218ENST00000493829 MSRB1Q9NZV6 116 aa13.86□□□□□ -0.19
USP39-218ENST00000493829 MUC4Q99102 2169 aa13.86□□□□□ -0.19
USP39-218ENST00000493829 GAGE12BA1L429 117 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 F2Z2F3 143 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 GAGE7O76087 117 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 GAGE12FP0CL80 117 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 GAGE12GP0CL81 117 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 GAGE12IP0CL82 117 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 ZFP82Q8N141 532 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 DEFB130BP0DP73 79 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 DEFB130AP0DP74 79 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 FOXA3P55318 350 aaPredicted RBP13.85□□□□□ -0.19
USP39-218ENST00000493829 COL7A1Q02388 2944 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 DAZ2Q13117 558 aaKnown RBP13.85□□□□□ -0.19
USP39-218ENST00000493829 TWIST1Q15672 202 aa13.85□□□□□ -0.19
USP39-218ENST00000493829 HUWE1Q7Z6Z7 4374 aaKnown RBP13.84□□□□□ -0.19
USP39-218ENST00000493829 DNAH9Q9NYC9 4486 aa13.84□□□□□ -0.19
USP39-218ENST00000493829 A0A1B0GUT8 65 aa13.84□□□□□ -0.19
USP39-218ENST00000493829 NTF3P20783 257 aa13.84□□□□□ -0.19
USP39-218ENST00000493829 SYT8Q8NBV8 401 aa13.84□□□□□ -0.19
USP39-218ENST00000493829 IMMP2LQ96T52 175 aa13.84□□□□□ -0.19
USP39-218ENST00000493829 C11orf68Q9H3H3 251 aaKnown RBP13.84□□□□□ -0.19
USP39-218ENST00000493829 FBN3Q75N90 2809 aa13.84□□□□□ -0.19
USP39-218ENST00000493829 CACNG7P62955 275 aa13.83□□□□□ -0.2
USP39-218ENST00000493829 JPT2Q9H910 190 aa13.83□□□□□ -0.2
USP39-218ENST00000493829 SMCO4Q9NRQ5 59 aa13.83□□□□□ -0.2
USP39-218ENST00000493829 DKK2Q9UBU2 259 aa13.83□□□□□ -0.2
USP39-218ENST00000493829 TGIF2-C20orf24A0A0A6YYL0 155 aa13.82□□□□□ -0.2
USP39-218ENST00000493829 CXorf65A6NEN9 183 aa13.82□□□□□ -0.2
USP39-218ENST00000493829 NXPH4O95158 308 aa13.82□□□□□ -0.2
USP39-218ENST00000493829 NHLRC4P0CG21 123 aaPredicted RBP13.82□□□□□ -0.2
USP39-218ENST00000493829 CAMPP49913 170 aa13.82□□□□□ -0.2
USP39-218ENST00000493829 BTF3L4Q96K17 158 aa13.82□□□□□ -0.2
USP39-218ENST00000493829 TRGV2A0A075B6R0 118 aa13.81□□□□□ -0.2
USP39-218ENST00000493829 IGHV3-53P01767 116 aa13.81□□□□□ -0.2
USP39-218ENST00000493829 RIGQ13278 110 aa13.81□□□□□ -0.2
USP39-218ENST00000493829 ELOBQ15370 118 aa13.81□□□□□ -0.2
USP39-218ENST00000493829 CNFNQ9BYD5 112 aa13.81□□□□□ -0.2
USP39-218ENST00000493829 A0A087WWL8 130 aa13.8□□□□□ -0.2
USP39-218ENST00000493829 LYRM9A8MSI8 78 aa13.8□□□□□ -0.2
USP39-218ENST00000493829 SPART-AS1P0CW21 52 aa13.8□□□□□ -0.2
USP39-218ENST00000493829 FAM74A4Q5TZK3 123 aa13.8□□□□□ -0.2
USP39-218ENST00000493829 LGALS9BQ3B8N2 356 aa13.79□□□□□ -0.2
USP39-218ENST00000493829 RASL10AQ92737 203 aa13.79□□□□□ -0.2
USP39-218ENST00000493829 IGHV3-73A0A0B4J1V6 119 aa13.79□□□□□ -0.2
USP39-218ENST00000493829 DAD1P61803 113 aa13.79□□□□□ -0.2
USP39-218ENST00000493829 HBBP68871 147 aa13.79□□□□□ -0.2
USP39-218ENST00000493829 C14orf178Q8N769 122 aaPredicted RBP13.79□□□□□ -0.2
USP39-218ENST00000493829 AP1S3Q96PC3 154 aa13.79□□□□□ -0.2
USP39-218ENST00000493829 SAMD10Q9BYL1 202 aa13.79□□□□□ -0.2
USP39-218ENST00000493829 IGHV4-4A0A075B6R2 117 aa13.78□□□□□ -0.2
USP39-218ENST00000493829 EVI2AP22794 236 aa13.78□□□□□ -0.2
USP39-218ENST00000493829 U3KQK5 164 aa13.78□□□□□ -0.2
USP39-218ENST00000493829 A0A1B0GXF2 115 aa13.77□□□□□ -0.21
USP39-218ENST00000493829 RAB4BP61018 213 aa13.77□□□□□ -0.21
USP39-218ENST00000493829 WDR73Q6P4I2 378 aa13.77□□□□□ -0.21
USP39-218ENST00000493829 YPEL4Q96NS1 127 aa13.77□□□□□ -0.21
USP39-218ENST00000493829 TRAV9-1A0A075B6T8 112 aa13.76□□□□□ -0.21
USP39-218ENST00000493829 MGPP08493 103 aa13.76□□□□□ -0.21
USP39-218ENST00000493829 NANOS2P60321 138 aaKnown RBP13.76□□□□□ -0.21
USP39-218ENST00000493829 CFAP126Q5VTH2 177 aa13.76□□□□□ -0.21
USP39-218ENST00000493829 ATP5L2Q7Z4Y8 100 aa13.76□□□□□ -0.21
USP39-218ENST00000493829 LINC00612Q8N6U2 182 aa13.76□□□□□ -0.21
USP39-218ENST00000493829 PTH2Q96A98 100 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms