RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ARL17AQ8IVW1 177 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 TRAV12-1A0A0B4J245 112 aa13.99□□□□□ -0.17
CCDC3-201ENST00000378825 ZNF418Q8TF45 676 aaPredicted RBP13.99□□□□□ -0.17
CCDC3-201ENST00000378825 METTL26Q96S19 204 aa13.99□□□□□ -0.17
CCDC3-201ENST00000378825 CRYBG3Q68DQ2 2970 aa13.99□□□□□ -0.17
CCDC3-201ENST00000378825 GNRH2O43555 120 aa13.99□□□□□ -0.17
CCDC3-201ENST00000378825 SCGB1D4Q6XE38 83 aa13.99□□□□□ -0.17
CCDC3-201ENST00000378825 TMEM219Q86XT9 240 aa13.99□□□□□ -0.17
CCDC3-201ENST00000378825 ATP6V0BQ99437 205 aa13.99□□□□□ -0.17
CCDC3-201ENST00000378825 DUSP14O95147 198 aaKnown RBP13.99□□□□□ -0.17
CCDC3-201ENST00000378825 TRBV12-3P01733 135 aa13.99□□□□□ -0.17
CCDC3-201ENST00000378825 PSMB2P49721 201 aa13.98□□□□□ -0.17
CCDC3-201ENST00000378825 UNQ9165/PRO28630Q6UXU0 137 aa13.98□□□□□ -0.17
CCDC3-201ENST00000378825 ZFAND2AQ8N6M9 145 aa13.98□□□□□ -0.17
CCDC3-201ENST00000378825 S100A4P26447 101 aaKnown RBP13.98□□□□□ -0.17
CCDC3-201ENST00000378825 RAB9AP51151 201 aa13.98□□□□□ -0.17
CCDC3-201ENST00000378825 SYT8Q8NBV8 401 aa13.98□□□□□ -0.17
CCDC3-201ENST00000378825 MRAP2Q96G30 205 aa13.98□□□□□ -0.17
CCDC3-201ENST00000378825 TSPAN13O95857 204 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 CRYGDP07320 174 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 ANXA2RQ3ZCQ2 193 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 GPHB5Q86YW7 130 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 UBTD1Q9HAC8 227 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 SAA4P35542 130 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 UCNP55089 124 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 SRSF9Q13242 221 aaKnown RBP eCLIP13.97□□□□□ -0.17
CCDC3-201ENST00000378825 CFAP126Q5VTH2 177 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 JPT2Q9H910 190 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 SPG11Q96JI7 2443 aa13.97□□□□□ -0.17
CCDC3-201ENST00000378825 SCGB1A1P11684 91 aa13.96□□□□□ -0.17
CCDC3-201ENST00000378825 FOXI1Q12951 378 aa13.96□□□□□ -0.17
CCDC3-201ENST00000378825 ORMDL2Q53FV1 153 aa13.96□□□□□ -0.17
CCDC3-201ENST00000378825 IGHV3OR16-10A0A075B7F0 116 aa13.96□□□□□ -0.18
CCDC3-201ENST00000378825 COX6B1P14854 86 aa13.96□□□□□ -0.18
CCDC3-201ENST00000378825 Q6ZS46 218 aa13.96□□□□□ -0.18
CCDC3-201ENST00000378825 CDIP1Q9H305 208 aa13.96□□□□□ -0.18
CCDC3-201ENST00000378825 PHLDA3Q9Y5J5 127 aa13.96□□□□□ -0.18
CCDC3-201ENST00000378825 C11orf86A6NJI1 115 aa13.95□□□□□ -0.18
CCDC3-201ENST00000378825 TSHBP01222 138 aa13.95□□□□□ -0.18
CCDC3-201ENST00000378825 SIRPDQ9H106 197 aa13.95□□□□□ -0.18
CCDC3-201ENST00000378825 RPL39P62891 51 aaKnown RBP13.95□□□□□ -0.18
CCDC3-201ENST00000378825 RNASE4P34096 147 aaKnown RBP13.94□□□□□ -0.18
CCDC3-201ENST00000378825 ARL3P36405 182 aa13.94□□□□□ -0.18
CCDC3-201ENST00000378825 CKS1BP61024 79 aa13.94□□□□□ -0.18
CCDC3-201ENST00000378825 SPOCK3Q9BQ16 436 aa13.94□□□□□ -0.18
CCDC3-201ENST00000378825 U3KQE9 123 aa13.94□□□□□ -0.18
CCDC3-201ENST00000378825 TSPEAR-AS2P59090 65 aa13.94□□□□□ -0.18
CCDC3-201ENST00000378825 MINOS1Q5TGZ0 78 aa13.94□□□□□ -0.18
CCDC3-201ENST00000378825 EEF1AKMT3Q96AZ1 226 aa13.94□□□□□ -0.18
CCDC3-201ENST00000378825 MINOS1-NBL1R4GNA1 71 aa13.94□□□□□ -0.18
CCDC3-201ENST00000378825 MT-ATP8P03928 68 aa13.93□□□□□ -0.18
CCDC3-201ENST00000378825 ITLN2Q8WWU7 325 aaPredicted RBP13.93□□□□□ -0.18
CCDC3-201ENST00000378825 C1QTNF4Q9BXJ3 329 aa13.93□□□□□ -0.18
CCDC3-201ENST00000378825 DPH3P1Q9H4G8 78 aa13.93□□□□□ -0.18
CCDC3-201ENST00000378825 UBE2D1P51668 147 aa13.93□□□□□ -0.18
CCDC3-201ENST00000378825 A0A1B0GV72 72 aa13.92□□□□□ -0.18
CCDC3-201ENST00000378825 CD7P09564 240 aa13.92□□□□□ -0.18
CCDC3-201ENST00000378825 SORL1Q92673 2214 aa13.92□□□□□ -0.18
CCDC3-201ENST00000378825 IGLV4-69A0A075B6H9 119 aa13.92□□□□□ -0.18
CCDC3-201ENST00000378825 DLX4Q92988 240 aaPredicted RBP13.92□□□□□ -0.18
CCDC3-201ENST00000378825 CARD19Q96LW7 228 aa13.92□□□□□ -0.18
CCDC3-201ENST00000378825 LINC01619G3V211 115 aa13.92□□□□□ -0.18
CCDC3-201ENST00000378825 RNASE3P12724 160 aaKnown RBP13.92□□□□□ -0.18
CCDC3-201ENST00000378825 SRD5A1P18405 259 aa13.92□□□□□ -0.18
CCDC3-201ENST00000378825 RPL11P62913 178 aaKnown RBP13.92□□□□□ -0.18
CCDC3-201ENST00000378825 OOSP1A8MZH6 123 aa13.91□□□□□ -0.18
CCDC3-201ENST00000378825 MRPL53Q96EL3 112 aaKnown RBP13.91□□□□□ -0.18
CCDC3-201ENST00000378825 CELSR2Q9HCU4 2923 aa13.91□□□□□ -0.18
CCDC3-201ENST00000378825 ASIPP42127 132 aa13.91□□□□□ -0.18
CCDC3-201ENST00000378825 TP53TG1Q9Y2A0 90 aa13.91□□□□□ -0.18
CCDC3-201ENST00000378825 CUBNO60494 3623 aa13.9□□□□□ -0.18
CCDC3-201ENST00000378825 CFAP46Q8IYW2 2715 aa13.9□□□□□ -0.18
CCDC3-201ENST00000378825 CENPVL3A0A0U1RRI6 287 aa13.9□□□□□ -0.18
CCDC3-201ENST00000378825 TCL1BO95988 128 aa13.9□□□□□ -0.18
CCDC3-201ENST00000378825 IGHV3-11P01762 117 aa13.9□□□□□ -0.18
CCDC3-201ENST00000378825 XGP55808 180 aa13.9□□□□□ -0.18
CCDC3-201ENST00000378825 PKD1L2Q7Z442 2459 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 TRAV26-1A0A087WT03 109 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 A0A087WWL8 130 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 A0A0J9YY99 117 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 EDN2P20800 178 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 C1orf122Q6ZSJ8 110 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 BPESC1Q9GZL8 116 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 TRBV7-1A0A0A6YYK4 115 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 TRAV21A0A0B4J279 112 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 C19orf84I3L1E1 186 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 KIR2DL4Q99706 377 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 ABCA2Q9BZC7 2435 aa13.89□□□□□ -0.19
CCDC3-201ENST00000378825 NDUFA11Q86Y39 141 aa13.88□□□□□ -0.19
CCDC3-201ENST00000378825 SPINK8P0C7L1 97 aa13.88□□□□□ -0.19
CCDC3-201ENST00000378825 UBE2D3P61077 147 aa13.88□□□□□ -0.19
CCDC3-201ENST00000378825 UBE2D2P62837 147 aa13.88□□□□□ -0.19
CCDC3-201ENST00000378825 OR10J6PQ8NGY7 276 aa13.88□□□□□ -0.19
CCDC3-201ENST00000378825 OPRPNQ99935 248 aaPredicted RBP13.88□□□□□ -0.19
CCDC3-201ENST00000378825 FLNCQ14315 2725 aa13.87□□□□□ -0.19
CCDC3-201ENST00000378825 LINC00315P59091 139 aa13.87□□□□□ -0.19
CCDC3-201ENST00000378825 C9orf139Q6ZV77 190 aa13.87□□□□□ -0.19
CCDC3-201ENST00000378825 C5orf56Q8N8D9 126 aa13.87□□□□□ -0.19
CCDC3-201ENST00000378825 CSMD2Q7Z408 3487 aa13.87□□□□□ -0.19
CCDC3-201ENST00000378825 UTP20O75691 2785 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms