RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 TRBV7-6A0A0J9YX20 115 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 ZNF638Q14966 1978 aaKnown RBP3.79□□□□□ -1.8
PCDH9-201ENST00000377861 TRGV4A0A0C4DH28 118 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 LINC01620Q4KN68 170 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 PLXNB2O15031 1838 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 LINC00158P58513 81 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 TDRD15B5MCY1 1934 aaKnown RBP3.79□□□□□ -1.8
PCDH9-201ENST00000377861 IGLV1-40P01703 118 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 ORMDL1Q9P0S3 153 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 COL11A2P13942 1736 aaPredicted RBP3.79□□□□□ -1.8
PCDH9-201ENST00000377861 PDCD11Q14690 1871 aaKnown RBP3.79□□□□□ -1.8
PCDH9-201ENST00000377861 ZSWIM8A7E2V4 1837 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 ABCA1O95477 2261 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 PI4KAP42356 2102 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 NUPR1O60356 82 aa3.79□□□□□ -1.8
PCDH9-201ENST00000377861 CHD3Q12873 2000 aaKnown RBP3.78□□□□□ -1.8
PCDH9-201ENST00000377861 FREM3P0C091 2139 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 NDUFA1O15239 70 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 UBE2D1P51668 147 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 C4orf3Q8WVX3 66 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 LCTP09848 1927 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 Q8N9W7 124 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 M0QY20 66 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 NDUFV3P56181 108 aaKnown RBP3.78□□□□□ -1.8
PCDH9-201ENST00000377861 CKAP5Q14008 2032 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 J3KT08 172 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 KIR2DL5BQ8NHK3 375 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 MLANAQ16655 118 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 MRAPQ8TCY5 172 aa3.78□□□□□ -1.8
PCDH9-201ENST00000377861 DKK2Q9UBU2 259 aa3.78□□□□□ -1.81
PCDH9-201ENST00000377861 CEP295Q9C0D2 2601 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 LRRK1Q38SD2 2015 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 FUSP35637 526 aaKnown RBP eCLIP3.77□□□□□ -1.81
PCDH9-201ENST00000377861 SIRPDQ9H106 197 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 IGKV2-40A0A087WW87 121 aaPredicted RBP3.77□□□□□ -1.81
PCDH9-201ENST00000377861 OVOL3O00110 214 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 COX7A2LO14548 114 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 IGKV2D-40P01614 121 aaPredicted RBP3.77□□□□□ -1.81
PCDH9-201ENST00000377861 A0A1B0GUV1 79 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 CFHR3Q02985 330 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 FAM74A4Q5TZK3 123 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 C11orf68Q9H3H3 251 aaKnown RBP3.77□□□□□ -1.81
PCDH9-201ENST00000377861 FOXC1Q12948 553 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 BEAN1Q3B7T3 259 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 VPREB3Q9UKI3 123 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 A0A087WZ39 114 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 MRPL36Q9P0J6 103 aaKnown RBP3.77□□□□□ -1.81
PCDH9-201ENST00000377861 F6UB75 175 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 C5orf56Q8N8D9 126 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 ZNF581Q9P0T4 197 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 ATP6V0E1O15342 81 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 PRRC2CQ9Y520 2896 aaKnown RBP3.77□□□□□ -1.81
PCDH9-201ENST00000377861 ZNF503-AS2A6NEH8 195 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 PRO0255Q9UI72 69 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 RTTNQ86VV8 2226 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 LOC107984640A0A0U1RRK4 108 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 PAX4O43316 350 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 KLK15Q9H2R5 256 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 MALRD1Q5VYJ5 2156 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 LMO4P61968 165 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 A0A0J9YY99 117 aa3.77□□□□□ -1.81
PCDH9-201ENST00000377861 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.76□□□□□ -1.81
PCDH9-201ENST00000377861 MIA3Q5JRA6 1907 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 NYNRINQ9P2P1 1898 aaKnown RBP3.76□□□□□ -1.81
PCDH9-201ENST00000377861 EREGO14944 169 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 CRIP1P50238 77 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 UBE2D3P61077 147 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 UBE2D2P62837 147 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 DYNAPQ8N1N2 210 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 RBM3P98179 157 aaKnown RBP3.76□□□□□ -1.81
PCDH9-201ENST00000377861 SERP2Q8N6R1 65 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 ESPL1Q14674 2120 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 C10orf55Q5SWW7 151 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 TMEM263Q8WUH6 116 aaKnown RBP3.76□□□□□ -1.81
PCDH9-201ENST00000377861 FGF23Q9GZV9 251 aaPredicted RBP3.76□□□□□ -1.81
PCDH9-201ENST00000377861 CFAP126Q5VTH2 177 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 TRAV12-3A0A0B4J271 114 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 AKAP6Q13023 2319 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 MYO18BQ8IUG5 2567 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 Q6ZUT4 128 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 MRPS12O15235 138 aaKnown RBP3.76□□□□□ -1.81
PCDH9-201ENST00000377861 LINC01560Q8TB33 94 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 BAALCQ8WXS3 180 aa3.76□□□□□ -1.81
PCDH9-201ENST00000377861 XIRP1Q702N8 1843 aaKnown RBP3.75□□□□□ -1.81
PCDH9-201ENST00000377861 IGHV3-48P01763 117 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 POLR2AP24928 1970 aaKnown RBP3.75□□□□□ -1.81
PCDH9-201ENST00000377861 SBSPONQ8IVN8 264 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 SPTBP11277 2137 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 PLXNA2O75051 1894 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 ITLN2Q8WWU7 325 aaPredicted RBP3.75□□□□□ -1.81
PCDH9-201ENST00000377861 NAV3Q8IVL0 2385 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 RALGAPA1Q6GYQ0 2036 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 RPL28P46779 137 aaKnown RBP3.75□□□□□ -1.81
PCDH9-201ENST00000377861 ZFAND2AQ8N6M9 145 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 COL4A3Q01955 1670 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 IL17DQ8TAD2 202 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 A6NDX4 124 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 WFDC2Q14508 124 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 GREB1Q4ZG55 1949 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 LYPD2Q6UXB3 125 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms