RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 C9orf47Q6ZRZ4 202 aa13.48□□□□□ -0.25
PTPRU-202ENST00000373779 ZNF625Q96I27 306 aaPredicted RBP13.48□□□□□ -0.25
PTPRU-202ENST00000373779 ATP6V0BQ99437 205 aa13.48□□□□□ -0.25
PTPRU-202ENST00000373779 CACNA1BQ00975 2339 aa13.47□□□□□ -0.25
PTPRU-202ENST00000373779 RHOHQ15669 191 aa13.47□□□□□ -0.25
PTPRU-202ENST00000373779 IGHV3-16A0A0C4DH30 117 aa13.47□□□□□ -0.25
PTPRU-202ENST00000373779 PAX4O43316 350 aa13.47□□□□□ -0.25
PTPRU-202ENST00000373779 GATD1Q8NB37 220 aa13.47□□□□□ -0.25
PTPRU-202ENST00000373779 TRAV12-1A0A0B4J245 112 aa13.47□□□□□ -0.25
PTPRU-202ENST00000373779 MYCNOSP40205 109 aa13.47□□□□□ -0.25
PTPRU-202ENST00000373779 SH2D6Q7Z4S9 175 aa13.47□□□□□ -0.25
PTPRU-202ENST00000373779 TP73-AS1Q9UF72 201 aa13.47□□□□□ -0.25
PTPRU-202ENST00000373779 TCTEX1D4Q5JR98 221 aa13.46□□□□□ -0.25
PTPRU-202ENST00000373779 MED13LQ71F56 2210 aa13.46□□□□□ -0.25
PTPRU-202ENST00000373779 TNCP24821 2201 aa13.46□□□□□ -0.25
PTPRU-202ENST00000373779 C11orf68Q9H3H3 251 aaKnown RBP13.46□□□□□ -0.25
PTPRU-202ENST00000373779 C22orf34Q6ZV56 151 aa13.46□□□□□ -0.26
PTPRU-202ENST00000373779 SUMO4Q6EEV6 95 aa13.45□□□□□ -0.26
PTPRU-202ENST00000373779 OVOL2Q9BRP0 275 aa13.45□□□□□ -0.26
PTPRU-202ENST00000373779 XCL2Q9UBD3 114 aa13.45□□□□□ -0.26
PTPRU-202ENST00000373779 PRR14LQ5THK1 2151 aa13.45□□□□□ -0.26
PTPRU-202ENST00000373779 LINC01619G3V211 115 aa13.45□□□□□ -0.26
PTPRU-202ENST00000373779 ZNF80P51504 273 aaPredicted RBP13.45□□□□□ -0.26
PTPRU-202ENST00000373779 SPTAN1Q13813 2472 aaKnown RBP13.44□□□□□ -0.26
PTPRU-202ENST00000373779 IGHV3-38A0A0C4DH36 116 aa13.44□□□□□ -0.26
PTPRU-202ENST00000373779 LGALS1P09382 135 aaKnown RBP13.44□□□□□ -0.26
PTPRU-202ENST00000373779 HTN3P15516 51 aa13.44□□□□□ -0.26
PTPRU-202ENST00000373779 CRYGBP07316 175 aa13.44□□□□□ -0.26
PTPRU-202ENST00000373779 TOMM6Q96B49 74 aa13.44□□□□□ -0.26
PTPRU-202ENST00000373779 RPL35AP18077 110 aaKnown RBP13.43□□□□□ -0.26
PTPRU-202ENST00000373779 C5orf56Q8N8D9 126 aa13.43□□□□□ -0.26
PTPRU-202ENST00000373779 ZFP2Q6ZN57 461 aa13.43□□□□□ -0.26
PTPRU-202ENST00000373779 CFC1BP0CG36 223 aa13.43□□□□□ -0.26
PTPRU-202ENST00000373779 CFC1P0CG37 223 aa13.43□□□□□ -0.26
PTPRU-202ENST00000373779 KIAA1549Q9HCM3 1950 aa13.43□□□□□ -0.26
PTPRU-202ENST00000373779 C1QTNF4Q9BXJ3 329 aa13.42□□□□□ -0.26
PTPRU-202ENST00000373779 NBL1P41271 181 aa13.42□□□□□ -0.26
PTPRU-202ENST00000373779 LINC00310P59036 64 aa13.42□□□□□ -0.26
PTPRU-202ENST00000373779 NSUN5P1Q3KNT7 163 aa13.42□□□□□ -0.26
PTPRU-202ENST00000373779 ZFP36P26651 326 aaKnown RBP13.42□□□□□ -0.26
PTPRU-202ENST00000373779 WFDC2Q14508 124 aa13.42□□□□□ -0.26
PTPRU-202ENST00000373779 BAALCQ8WXS3 180 aa13.42□□□□□ -0.26
PTPRU-202ENST00000373779 HCFC1P51610 2035 aa13.42□□□□□ -0.26
PTPRU-202ENST00000373779 RNASE13Q5GAN3 156 aaKnown RBP13.42□□□□□ -0.26
PTPRU-202ENST00000373779 GAGE12JA6NER3 117 aa13.41□□□□□ -0.26
PTPRU-202ENST00000373779 IGLC6P0CF74 106 aa13.41□□□□□ -0.26
PTPRU-202ENST00000373779 GAGE4Q13068 117 aa13.41□□□□□ -0.26
PTPRU-202ENST00000373779 GAGE5Q13069 117 aa13.41□□□□□ -0.26
PTPRU-202ENST00000373779 C6orf226Q5I0X4 101 aa13.41□□□□□ -0.26
PTPRU-202ENST00000373779 ZNRF2Q8NHG8 242 aa13.41□□□□□ -0.26
PTPRU-202ENST00000373779 RNF223E7ERA6 249 aa13.4□□□□□ -0.26
PTPRU-202ENST00000373779 MAPK1IP1LQ8NDC0 245 aa13.4□□□□□ -0.26
PTPRU-202ENST00000373779 G3V4G9 280 aa13.4□□□□□ -0.26
PTPRU-202ENST00000373779 E9PLD3 99 aa13.4□□□□□ -0.26
PTPRU-202ENST00000373779 GAGE2AQ6NT46 116 aa13.4□□□□□ -0.26
PTPRU-202ENST00000373779 AJUBAQ96IF1 538 aa13.4□□□□□ -0.26
PTPRU-202ENST00000373779 ELANEP08246 267 aa13.39□□□□□ -0.27
PTPRU-202ENST00000373779 MED14OSP0DP75 135 aa13.39□□□□□ -0.27
PTPRU-202ENST00000373779 S100A7L2Q5SY68 101 aa13.39□□□□□ -0.27
PTPRU-202ENST00000373779 NTN5Q8WTR8 489 aaPredicted RBP13.39□□□□□ -0.27
PTPRU-202ENST00000373779 ADORA2A-AS1P86434 159 aa13.39□□□□□ -0.27
PTPRU-202ENST00000373779 CRIP1P50238 77 aa13.38□□□□□ -0.27
PTPRU-202ENST00000373779 Q8NA96 180 aa13.38□□□□□ -0.27
PTPRU-202ENST00000373779 ODF3BA8MYP8 253 aa13.38□□□□□ -0.27
PTPRU-202ENST00000373779 SIRPDQ9H106 197 aa13.38□□□□□ -0.27
PTPRU-202ENST00000373779 CARD19Q96LW7 228 aa13.38□□□□□ -0.27
PTPRU-202ENST00000373779 ARFGEF3Q5TH69 2177 aa13.38□□□□□ -0.27
PTPRU-202ENST00000373779 GHRHP01286 108 aa13.37□□□□□ -0.27
PTPRU-202ENST00000373779 IGLV2-11P01706 119 aa13.37□□□□□ -0.27
PTPRU-202ENST00000373779 SP5Q6BEB4 398 aaPredicted RBP13.37□□□□□ -0.27
PTPRU-202ENST00000373779 IGHV4-38-2P0DP08 117 aa13.37□□□□□ -0.27
PTPRU-202ENST00000373779 VWC2LB2RUY7 222 aa13.37□□□□□ -0.27
PTPRU-202ENST00000373779 J3QLI3 93 aa13.37□□□□□ -0.27
PTPRU-202ENST00000373779 RPL39P62891 51 aaKnown RBP13.37□□□□□ -0.27
PTPRU-202ENST00000373779 HERVK_113P63121 156 aa13.36□□□□□ -0.27
PTPRU-202ENST00000373779 IGHV4-61A0A0C4DH41 118 aa13.36□□□□□ -0.27
PTPRU-202ENST00000373779 BLCAPP62952 87 aa13.36□□□□□ -0.27
PTPRU-202ENST00000373779 CREBBPQ92793 2442 aa13.36□□□□□ -0.27
PTPRU-202ENST00000373779 IGHV4-59P01825 116 aa13.35□□□□□ -0.27
PTPRU-202ENST00000373779 INAFM2P0DMQ5 153 aa13.35□□□□□ -0.27
PTPRU-202ENST00000373779 FBXL19-AS1Q494R0 122 aa13.35□□□□□ -0.27
PTPRU-202ENST00000373779 DEFB1P60022 68 aa13.35□□□□□ -0.27
PTPRU-202ENST00000373779 U3KQK5 164 aa13.35□□□□□ -0.27
PTPRU-202ENST00000373779 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.35□□□□□ -0.272e-6■■■□□ 19.2
PTPRU-202ENST00000373779 IFITM1P13164 125 aa13.35□□□□□ -0.27
PTPRU-202ENST00000373779 CCDC140Q96MF4 163 aa13.35□□□□□ -0.27
PTPRU-202ENST00000373779 HOXD3P31249 432 aaPredicted RBP13.34□□□□□ -0.27
PTPRU-202ENST00000373779 DEFB112Q30KQ8 113 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 A4D1N5 150 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 Q8N976 141 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 TMEM243Q9BU79 118 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 SPANXA1Q9NS26 97 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 EXPH5Q8NEV8 1989 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 CFHR3Q02985 330 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.34□□□□□ -0.27
PTPRU-202ENST00000373779 A0A0J9YXV3 536 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 IGKV2-29A2NJV5 120 aaPredicted RBP13.34□□□□□ -0.27
PTPRU-202ENST00000373779 TIMM17AQ99595 171 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 C11orf86A6NJI1 115 aa13.34□□□□□ -0.27
PTPRU-202ENST00000373779 HIST1H4AP62805 103 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms