RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TRBV7-3A0A075B6L6 115 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 IGKV2-40A0A087WW87 121 aaPredicted RBP3.13□□□□□ -1.91
USH2A-202ENST00000366942 GAGE12HA6NDE8 117 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 SOCS3O14543 225 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 IGKV2D-40P01614 121 aaPredicted RBP3.13□□□□□ -1.91
USH2A-202ENST00000366942 Q8TAT8 98 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 IGLV10-54A0A075B6I4 117 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 TRAV9-1A0A075B6T8 112 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 ATP6V0CP27449 155 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 DNLZQ5SXM8 178 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 FLVCR1-AS1Q8TAF5 88 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 DCANP1Q8TF63 244 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 LY75O60449 1722 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 TRAV12-2A0A075B6T6 113 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 H7C423 109 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 RPL37AP61513 92 aaKnown RBP3.13□□□□□ -1.91
USH2A-202ENST00000366942 CENPWQ5EE01 88 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 Q8N7P7 452 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 SCRT1Q9BWW7 348 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 DOCK3Q8IZD9 2030 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 KIAA1551Q9HCM1 1747 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 PRAC2D3DTV9 90 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 FHL3Q13643 280 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 PUSL1Q8N0Z8 303 aaKnown RBP3.12□□□□□ -1.91
USH2A-202ENST00000366942 NRTNQ99748 197 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 SELENOKQ9Y6D0 94 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 SIPA1L3O60292 1781 aaPredicted RBP3.12□□□□□ -1.91
USH2A-202ENST00000366942 IGHV7-81A0A0B4J1V7 117 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 PLAC8L1A1L4L8 177 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 SDHAF1A6NFY7 115 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 IGKV1-17P01599 117 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 PSMB8P28062 276 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 KRTAP21-3Q3LHN1 58 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 BVES-AS1Q5T3Y7 98 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 FOXL2NBQ6ZUU3 175 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 DEFB105AQ8NG35 78 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 MCM3APO60318 1980 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 CLLU1Q5K131 121 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 ZNF524Q96C55 264 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 IGKV1-27A0A075B6S5 117 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 RBAKDNA6NC62 111 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 CRYGAP11844 174 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 NAA38Q9BRA0 125 aaKnown RBP3.12□□□□□ -1.91
USH2A-202ENST00000366942 MED13Q9UHV7 2174 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 EP400Q96L91 3159 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 LY6LH3BQJ8 138 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 IGLV2-11P01706 119 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 RPS19P39019 145 aaKnown RBP3.12□□□□□ -1.91
USH2A-202ENST00000366942 REG3AQ06141 175 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 C20orf173Q96LM9 149 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 UPK3BQ9BT76 320 aa3.12□□□□□ -1.91
USH2A-202ENST00000366942 GATA1P15976 413 aaPredicted RBP3.11□□□□□ -1.91
USH2A-202ENST00000366942 ERG28Q9UKR5 140 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 IGKV1D-37A0A075B6S9 117 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 C3orf79P0CE67 100 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 COL5A1-AS1Q5SY13 56 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 ODF3Q96PU9 254 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 HSPB9Q9BQS6 159 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 DOCK8Q8NF50 2099 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 LGALS9CQ6DKI2 356 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 C5orf38Q86SI9 138 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 MUSTN1Q8IVN3 82 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 OPRPNQ99935 248 aaPredicted RBP3.11□□□□□ -1.91
USH2A-202ENST00000366942 COL4A5P29400 1685 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 K7EMI3 77 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 PDE6GP18545 87 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 KRTAP10-9P60411 292 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 LINC01620Q4KN68 170 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 IMUPQ9GZP8 106 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 WDR83OSQ9Y284 106 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 SERP1Q9Y6X1 66 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 COL4A6Q14031 1691 aa3.11□□□□□ -1.91
USH2A-202ENST00000366942 IGKV4-1P06312 121 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 CRYGCP07315 174 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 TMEM258P61165 79 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 CCL20P78556 96 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 OCIAD2Q56VL3 154 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 ARHGEF17Q96PE2 2063 aaPredicted RBP3.1□□□□□ -1.91
USH2A-202ENST00000366942 A0A1B0GX51 115 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 RNASE2P10153 161 aaKnown RBP3.1□□□□□ -1.91
USH2A-202ENST00000366942 C1orf137Q5JT78 98 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 SPAG11AQ6PDA7 123 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 Q6ZRP5 223 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 ZNF664Q8N3J9 261 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 ACANP16112 2415 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 PLXNA3P51805 1871 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 CHD3Q12873 2000 aaKnown RBP3.1□□□□□ -1.91
USH2A-202ENST00000366942 TDRD15B5MCY1 1934 aaKnown RBP3.1□□□□□ -1.91
USH2A-202ENST00000366942 NACAE9PAV3 2078 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 TRBV6-4A0A1B0GX49 114 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 MLANAQ16655 118 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 GFI1BQ5VTD9 330 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 C18orf15Q96N68 181 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 ZNF702PQ9H963 129 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 TMEM14CQ9P0S9 112 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 H0YIZ8 118 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 SH2D1AO60880 128 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 LINC00614P0C842 121 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 ATP11AUNQ6ZP68 121 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 MIR17HGQ75NE6 70 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms