RNA–Protein interactions for RNA: ENST00000262213.6

TRAM1-201, Transcript of translocation associated membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAM1, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAM1-201ENST00000262213 ZFAND2AQ8N6M9 145 aa13.24□□□□□ -0.29
TRAM1-201ENST00000262213 MRPL53Q96EL3 112 aaKnown RBP13.24□□□□□ -0.29
TRAM1-201ENST00000262213 CELSR1Q9NYQ6 3014 aa13.23□□□□□ -0.29
TRAM1-201ENST00000262213 CENPVL3A0A0U1RRI6 287 aa13.23□□□□□ -0.29
TRAM1-201ENST00000262213 A0A1W2PPR1 153 aa13.23□□□□□ -0.29
TRAM1-201ENST00000262213 IGHV3-11P01762 117 aa13.23□□□□□ -0.29
TRAM1-201ENST00000262213 ARL3P36405 182 aa13.23□□□□□ -0.29
TRAM1-201ENST00000262213 FBXL19-AS1Q494R0 122 aa13.23□□□□□ -0.29
TRAM1-201ENST00000262213 DUSP14O95147 198 aaKnown RBP13.23□□□□□ -0.29
TRAM1-201ENST00000262213 SPOCK3Q9BQ16 436 aa13.23□□□□□ -0.29
TRAM1-201ENST00000262213 PRO0461Q9UI25 63 aa13.23□□□□□ -0.29
TRAM1-201ENST00000262213 K7ENP7 123 aa13.22□□□□□ -0.29
TRAM1-201ENST00000262213 SRD5A1P18405 259 aa13.22□□□□□ -0.29
TRAM1-201ENST00000262213 PSMB2P49721 201 aa13.22□□□□□ -0.29
TRAM1-201ENST00000262213 U3KQE9 123 aa13.22□□□□□ -0.29
TRAM1-201ENST00000262213 TRAV21A0A0B4J279 112 aa13.22□□□□□ -0.29
TRAM1-201ENST00000262213 CLEC2AQ6UVW9 174 aa13.22□□□□□ -0.29
TRAM1-201ENST00000262213 C9orf139Q6ZV77 190 aa13.22□□□□□ -0.29
TRAM1-201ENST00000262213 ZNF418Q8TF45 676 aaPredicted RBP13.22□□□□□ -0.29
TRAM1-201ENST00000262213 TGFAP01135 160 aa13.21□□□□□ -0.29
TRAM1-201ENST00000262213 C20orf78Q9BR46 151 aa13.21□□□□□ -0.29
TRAM1-201ENST00000262213 UBTD1Q9HAC8 227 aa13.21□□□□□ -0.29
TRAM1-201ENST00000262213 TRAV41A0A0B4J266 112 aa13.21□□□□□ -0.29
TRAM1-201ENST00000262213 NDUFS8O00217 210 aa13.21□□□□□ -0.29
TRAM1-201ENST00000262213 GPHB5Q86YW7 130 aa13.21□□□□□ -0.29
TRAM1-201ENST00000262213 ITLN2Q8WWU7 325 aaPredicted RBP13.21□□□□□ -0.29
TRAM1-201ENST00000262213 RNF223E7ERA6 249 aa13.2□□□□□ -0.3
TRAM1-201ENST00000262213 ZFP2Q6ZN57 461 aa13.2□□□□□ -0.3
TRAM1-201ENST00000262213 C5orf56Q8N8D9 126 aa13.2□□□□□ -0.3
TRAM1-201ENST00000262213 JPT2Q9H910 190 aa13.2□□□□□ -0.3
TRAM1-201ENST00000262213 CIDEAO60543 219 aa13.2□□□□□ -0.3
TRAM1-201ENST00000262213 MUC4Q99102 2169 aa13.2□□□□□ -0.3
TRAM1-201ENST00000262213 NPFFO15130 113 aa13.2□□□□□ -0.3
TRAM1-201ENST00000262213 LINC00477Q96M19 166 aa13.19□□□□□ -0.3
TRAM1-201ENST00000262213 BPESC1Q9GZL8 116 aa13.19□□□□□ -0.3
TRAM1-201ENST00000262213 BRD3OSQ6XYD6 125 aa13.19□□□□□ -0.3
TRAM1-201ENST00000262213 PTH2Q96A98 100 aa13.19□□□□□ -0.3
TRAM1-201ENST00000262213 MAP1AP78559 2803 aaPredicted RBP13.19□□□□□ -0.3
TRAM1-201ENST00000262213 C11orf86A6NJI1 115 aa13.18□□□□□ -0.3
TRAM1-201ENST00000262213 RPL39P62891 51 aaKnown RBP13.18□□□□□ -0.3
TRAM1-201ENST00000262213 TP53TG1Q9Y2A0 90 aa13.18□□□□□ -0.3
TRAM1-201ENST00000262213 A0A087WWL8 130 aa13.18□□□□□ -0.3
TRAM1-201ENST00000262213 F5H697 171 aa13.18□□□□□ -0.3
TRAM1-201ENST00000262213 SPATA25Q9BR10 227 aa13.18□□□□□ -0.3
TRAM1-201ENST00000262213 TSPAN13O95857 204 aa13.17□□□□□ -0.3
TRAM1-201ENST00000262213 LY6EQ16553 131 aa13.17□□□□□ -0.3
TRAM1-201ENST00000262213 RNASE3P12724 160 aaKnown RBP13.17□□□□□ -0.3
TRAM1-201ENST00000262213 HIVEP3Q5T1R4 2406 aa13.17□□□□□ -0.3
TRAM1-201ENST00000262213 CRYGDP07320 174 aa13.16□□□□□ -0.3
TRAM1-201ENST00000262213 SMCPP49901 116 aaPredicted RBP13.16□□□□□ -0.3
TRAM1-201ENST00000262213 DLX4Q92988 240 aaPredicted RBP13.16□□□□□ -0.3
TRAM1-201ENST00000262213 TMEM238LA0A1B0GVL6 79 aa13.16□□□□□ -0.3
TRAM1-201ENST00000262213 A6NJY4 79 aa13.16□□□□□ -0.3
TRAM1-201ENST00000262213 OVOL1O14753 267 aa13.16□□□□□ -0.3
TRAM1-201ENST00000262213 TMEM170BQ5T4T1 132 aa13.15□□□□□ -0.3
TRAM1-201ENST00000262213 SYT8Q8NBV8 401 aa13.15□□□□□ -0.3
TRAM1-201ENST00000262213 LENEPQ9Y5L5 61 aa13.15□□□□□ -0.3
TRAM1-201ENST00000262213 TSHBP01222 138 aa13.15□□□□□ -0.3
TRAM1-201ENST00000262213 LINC01619G3V211 115 aa13.15□□□□□ -0.31
TRAM1-201ENST00000262213 FOXI1Q12951 378 aa13.15□□□□□ -0.31
TRAM1-201ENST00000262213 Q6ZS46 218 aa13.15□□□□□ -0.31
TRAM1-201ENST00000262213 SCGB1A1P11684 91 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 COX6B1P14854 86 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 EDN2P20800 178 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 FAM74A4Q5TZK3 123 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 CFAP126Q5VTH2 177 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 NFE4Q86UQ8 179 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 ATP6V0BQ99437 205 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 KLK9Q2XQG4 91 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 KLK9Q9UKQ9 250 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 MOB4Q9Y3A3 225 aa13.14□□□□□ -0.31
TRAM1-201ENST00000262213 IGLV4-69A0A075B6H9 119 aa13.13□□□□□ -0.31
TRAM1-201ENST00000262213 SOCS3O14543 225 aa13.13□□□□□ -0.31
TRAM1-201ENST00000262213 LMO4P61968 165 aa13.13□□□□□ -0.31
TRAM1-201ENST00000262213 C1QTNF4Q9BXJ3 329 aa13.13□□□□□ -0.31
TRAM1-201ENST00000262213 PF4V1P10720 104 aa13.13□□□□□ -0.31
TRAM1-201ENST00000262213 FAM223BA6NKX1 122 aa13.12□□□□□ -0.31
TRAM1-201ENST00000262213 TSPEAR-AS2P59090 65 aa13.12□□□□□ -0.31
TRAM1-201ENST00000262213 FAM223AQ8IWN6 122 aa13.12□□□□□ -0.31
TRAM1-201ENST00000262213 ZNF256Q9Y2P7 627 aaPredicted RBP13.12□□□□□ -0.31
TRAM1-201ENST00000262213 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.12□□□□□ -0.314e-7■■□□□ 13.5
TRAM1-201ENST00000262213 A0A1B0GV72 72 aa13.12□□□□□ -0.31
TRAM1-201ENST00000262213 UBE2D1P51668 147 aa13.12□□□□□ -0.31
TRAM1-201ENST00000262213 SORL1Q92673 2214 aa13.11□□□□□ -0.31
TRAM1-201ENST00000262213 IGKV3-20P01619 116 aa13.11□□□□□ -0.31
TRAM1-201ENST00000262213 CKS1BP61024 79 aa13.11□□□□□ -0.31
TRAM1-201ENST00000262213 HERVK_113P61574 105 aa13.11□□□□□ -0.31
TRAM1-201ENST00000262213 SUMO4Q6EEV6 95 aa13.11□□□□□ -0.31
TRAM1-201ENST00000262213 RHPN1-AS1Q9BWJ2 59 aa13.11□□□□□ -0.31
TRAM1-201ENST00000262213 COL12A1Q99715 3063 aa13.11□□□□□ -0.31
TRAM1-201ENST00000262213 A0A0J9YY99 117 aa13.11□□□□□ -0.31
TRAM1-201ENST00000262213 OPRPNQ99935 248 aaPredicted RBP13.11□□□□□ -0.31
TRAM1-201ENST00000262213 ABCA2Q9BZC7 2435 aa13.11□□□□□ -0.31
TRAM1-201ENST00000262213 IGHV3-64A0A075B6Q5 118 aa13.1□□□□□ -0.31
TRAM1-201ENST00000262213 TRAV12-3A0A0B4J271 114 aa13.1□□□□□ -0.31
TRAM1-201ENST00000262213 NDUFA4O00483 81 aa13.1□□□□□ -0.31
TRAM1-201ENST00000262213 CD7P09564 240 aa13.1□□□□□ -0.31
TRAM1-201ENST00000262213 SCGB1C2P0DMR2 95 aa13.1□□□□□ -0.31
TRAM1-201ENST00000262213 PMVKQ15126 192 aa13.1□□□□□ -0.31
TRAM1-201ENST00000262213 FAM159AQ6UWV7 190 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms