RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 WFDC11Q8NEX6 87 aa12.99□□□□□ -0.33
FOXA1-201ENST00000250448 TNFRSF18Q9Y5U5 241 aa12.98□□□□□ -0.33
FOXA1-201ENST00000250448 IGKV3D-20A0A0C4DH25 116 aa12.98□□□□□ -0.33
FOXA1-201ENST00000250448 TRGV3P03979 118 aa12.98□□□□□ -0.33
FOXA1-201ENST00000250448 IGHV4-31P0DP07 118 aa12.98□□□□□ -0.33
FOXA1-201ENST00000250448 HLA-DRB4P13762 266 aa12.98□□□□□ -0.33
FOXA1-201ENST00000250448 ZFAND3Q9H8U3 227 aa12.98□□□□□ -0.33
FOXA1-201ENST00000250448 HLA-DRB4X5D2U9 266 aa12.98□□□□□ -0.33
FOXA1-201ENST00000250448 H3BUX3 64 aa12.97□□□□□ -0.33
FOXA1-201ENST00000250448 SLC50A1Q9BRV3 221 aa12.97□□□□□ -0.33
FOXA1-201ENST00000250448 LINC00527Q9UJ94 153 aa12.97□□□□□ -0.33
FOXA1-201ENST00000250448 SMIM17P0DL12 118 aa12.97□□□□□ -0.33
FOXA1-201ENST00000250448 ECSCRQ19T08 205 aa12.97□□□□□ -0.33
FOXA1-201ENST00000250448 PHLDA1Q8WV24 401 aaPredicted RBP12.97□□□□□ -0.33
FOXA1-201ENST00000250448 C11orf21Q9P2W6 132 aa12.97□□□□□ -0.33
FOXA1-201ENST00000250448 BUB3O43684 328 aa12.96□□□□□ -0.33
FOXA1-201ENST00000250448 ZNF502Q8TBZ5 544 aa12.96□□□□□ -0.33
FOXA1-201ENST00000250448 FAM110AQ9BQ89 295 aa12.96□□□□□ -0.33
FOXA1-201ENST00000250448 SCGB1A1P11684 91 aa12.96□□□□□ -0.34
FOXA1-201ENST00000250448 CEND1Q8N111 149 aa12.96□□□□□ -0.34
FOXA1-201ENST00000250448 ATP6V0E1O15342 81 aa12.95□□□□□ -0.34
FOXA1-201ENST00000250448 C15orf32Q32M92 178 aa12.95□□□□□ -0.34
FOXA1-201ENST00000250448 TM2D2Q9BX73 214 aa12.95□□□□□ -0.34
FOXA1-201ENST00000250448 TMEM160Q9NX00 188 aa12.95□□□□□ -0.34
FOXA1-201ENST00000250448 NHP2Q9NX24 153 aaKnown RBP12.95□□□□□ -0.34
FOXA1-201ENST00000250448 G3V318 75 aa12.95□□□□□ -0.34
FOXA1-201ENST00000250448 LRRC75A-AS1Q8N1F1 130 aa12.95□□□□□ -0.34
FOXA1-201ENST00000250448 NRACQ8N912 160 aa12.95□□□□□ -0.34
FOXA1-201ENST00000250448 FAM110DQ8TAY7 271 aaPredicted RBP12.95□□□□□ -0.34
FOXA1-201ENST00000250448 AGPAT4-IT1Q9H0P7 198 aa12.95□□□□□ -0.34
FOXA1-201ENST00000250448 MRPL35Q9NZE8 188 aaKnown RBP12.95□□□□□ -0.34
FOXA1-201ENST00000250448 GATA3P23771 443 aa12.95□□□□□ -0.34
FOXA1-201ENST00000250448 IGHV3-66A0A0C4DH42 116 aa12.94□□□□□ -0.34
FOXA1-201ENST00000250448 LAGE3Q14657 143 aa12.94□□□□□ -0.34
FOXA1-201ENST00000250448 C5orf56Q8N8D9 126 aa12.94□□□□□ -0.34
FOXA1-201ENST00000250448 MYOZ3Q8TDC0 251 aa12.94□□□□□ -0.34
FOXA1-201ENST00000250448 UFC1Q9Y3C8 167 aa12.94□□□□□ -0.34
FOXA1-201ENST00000250448 IGHV7-4-1A0A0J9YVY3 117 aa12.93□□□□□ -0.34
FOXA1-201ENST00000250448 TRAV26-2A0A0B4J265 109 aa12.93□□□□□ -0.34
FOXA1-201ENST00000250448 RPL24P83731 157 aaKnown RBP12.93□□□□□ -0.34
FOXA1-201ENST00000250448 DEFB112Q30KQ8 113 aa12.93□□□□□ -0.34
FOXA1-201ENST00000250448 GEMIN7Q9H840 131 aaKnown RBP12.93□□□□□ -0.34
FOXA1-201ENST00000250448 MYO9AB2RTY4 2548 aa12.92□□□□□ -0.34
FOXA1-201ENST00000250448 CLPSL1A2RUU4 121 aa12.92□□□□□ -0.34
FOXA1-201ENST00000250448 TMEM78Q5T7P6 136 aa12.92□□□□□ -0.34
FOXA1-201ENST00000250448 MAPKAPK5-AS1Q8N8E1 139 aa12.92□□□□□ -0.34
FOXA1-201ENST00000250448 IGHV3OR16-13A0A075B7E8 117 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 A0A087WX48 190 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 IGHV3-74A0A0B4J1X5 117 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 TRAV8-2A0A0B4J237 113 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 TEX48A0A1B0GUV7 120 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 ARL3P36405 182 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 Q6ZS46 218 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 MOB4Q9Y3A3 225 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 AKAP9Q99996 3911 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 E9PLD3 99 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 K7EMI3 77 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 IGHV4-59P01825 116 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 BLCAPP62952 87 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 TAL2Q16559 108 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 MRPL53Q96EL3 112 aaKnown RBP12.91□□□□□ -0.34
FOXA1-201ENST00000250448 SIGMAR1Q99720 223 aa12.91□□□□□ -0.34
FOXA1-201ENST00000250448 SMIM20Q8N5G0 67 aa12.9□□□□□ -0.34
FOXA1-201ENST00000250448 CCDC140Q96MF4 163 aa12.9□□□□□ -0.34
FOXA1-201ENST00000250448 IGLL5B9A064 214 aa12.9□□□□□ -0.34
FOXA1-201ENST00000250448 CLEC19AQ6UXS0 136 aa12.9□□□□□ -0.34
FOXA1-201ENST00000250448 YAE1D1Q9NRH1 226 aa12.9□□□□□ -0.34
FOXA1-201ENST00000250448 PLNP26678 52 aa12.89□□□□□ -0.35
FOXA1-201ENST00000250448 KLK9Q2XQG4 91 aa12.89□□□□□ -0.35
FOXA1-201ENST00000250448 SPANXN1Q5VSR9 72 aa12.89□□□□□ -0.35
FOXA1-201ENST00000250448 KLK9Q9UKQ9 250 aa12.89□□□□□ -0.35
FOXA1-201ENST00000250448 IGHV4-4A0A075B6R2 117 aa12.89□□□□□ -0.35
FOXA1-201ENST00000250448 IGHV3-49A0A0A0MS15 119 aa12.89□□□□□ -0.35
FOXA1-201ENST00000250448 TSPAN13O95857 204 aa12.89□□□□□ -0.35
FOXA1-201ENST00000250448 C8orf86Q6ZUL3 223 aa12.89□□□□□ -0.35
FOXA1-201ENST00000250448 A6NDX4 124 aa12.88□□□□□ -0.35
FOXA1-201ENST00000250448 Q6ZQT7 251 aa12.88□□□□□ -0.35
FOXA1-201ENST00000250448 C9orf47Q6ZRZ4 202 aa12.88□□□□□ -0.35
FOXA1-201ENST00000250448 METTL26Q96S19 204 aa12.88□□□□□ -0.35
FOXA1-201ENST00000250448 MTORP42345 2549 aa12.88□□□□□ -0.35
FOXA1-201ENST00000250448 ZNF207O43670 478 aaKnown RBP12.87□□□□□ -0.35
FOXA1-201ENST00000250448 H3BVH4 76 aa12.87□□□□□ -0.35
FOXA1-201ENST00000250448 C12orf74Q32Q52 190 aa12.87□□□□□ -0.35
FOXA1-201ENST00000250448 MRAP2Q96G30 205 aa12.87□□□□□ -0.35
FOXA1-201ENST00000250448 SMIM2Q9BVW6 85 aa12.87□□□□□ -0.35
FOXA1-201ENST00000250448 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.87□□□□□ -0.35
FOXA1-201ENST00000250448 J3QLI3 93 aa12.87□□□□□ -0.35
FOXA1-201ENST00000250448 DUX5Q96PT3 197 aa12.87□□□□□ -0.35
FOXA1-201ENST00000250448 FOXI2Q6ZQN5 318 aa12.86□□□□□ -0.35
FOXA1-201ENST00000250448 EEF1AKMT3Q96AZ1 226 aa12.86□□□□□ -0.35
FOXA1-201ENST00000250448 HIST1H4GQ99525 98 aa12.86□□□□□ -0.35
FOXA1-201ENST00000250448 TRAV12-1A0A0B4J245 112 aa12.86□□□□□ -0.35
FOXA1-201ENST00000250448 F8VRH5 84 aa12.86□□□□□ -0.35
FOXA1-201ENST00000250448 H7C1H1 209 aa12.85□□□□□ -0.35
FOXA1-201ENST00000250448 AGRNO00468 2067 aa12.85□□□□□ -0.35
FOXA1-201ENST00000250448 M0QXV9 152 aa12.85□□□□□ -0.35
FOXA1-201ENST00000250448 PRR9Q5T870 116 aa12.85□□□□□ -0.35
FOXA1-201ENST00000250448 NF1P21359 2839 aa12.85□□□□□ -0.35
FOXA1-201ENST00000250448 TRBV7-3A0A075B6L6 115 aa12.84□□□□□ -0.35
FOXA1-201ENST00000250448 F8W1H4 67 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms