RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 KCNS1Q96KK3 526 aa14.03□□□□□ -0.16
CLK3-225ENST00000569063 HHLA3Q9XRX5 114 aa14.03□□□□□ -0.16
CLK3-225ENST00000569063 MRPS16Q9Y3D3 137 aaKnown RBP14.03□□□□□ -0.16
CLK3-225ENST00000569063 DNAH17Q9UFH2 4485 aa14.03□□□□□ -0.16
CLK3-225ENST00000569063 TYMSP04818 313 aa14.02□□□□□ -0.17
CLK3-225ENST00000569063 CRYBA4P53673 196 aa14.02□□□□□ -0.17
CLK3-225ENST00000569063 FLI1Q01543 452 aaPredicted RBP14.02□□□□□ -0.17
CLK3-225ENST00000569063 ZNF345Q14585 488 aa14.02□□□□□ -0.17
CLK3-225ENST00000569063 C8orf49Q96NF6 230 aa14.02□□□□□ -0.17
CLK3-225ENST00000569063 SDF2L1Q9HCN8 221 aa14.02□□□□□ -0.17
CLK3-225ENST00000569063 MUC4Q99102 2169 aa14.02□□□□□ -0.17
CLK3-225ENST00000569063 M0R2P5 195 aa14.01□□□□□ -0.17
CLK3-225ENST00000569063 ZNF80P51504 273 aaPredicted RBP14.01□□□□□ -0.17
CLK3-225ENST00000569063 KCNRGQ8N5I3 272 aa14.01□□□□□ -0.17
CLK3-225ENST00000569063 NKX6-2Q9C056 277 aaPredicted RBP14.01□□□□□ -0.17
CLK3-225ENST00000569063 ICOSQ9Y6W8 199 aa14.01□□□□□ -0.17
CLK3-225ENST00000569063 SAPCD1Q5SSQ6 148 aa14□□□□□ -0.17
CLK3-225ENST00000569063 PRNTQ86SH4 94 aa14□□□□□ -0.17
CLK3-225ENST00000569063 C6orf223Q8N319 242 aa14□□□□□ -0.17
CLK3-225ENST00000569063 TRGV4A0A0C4DH28 118 aa13.99□□□□□ -0.17
CLK3-225ENST00000569063 HMSDA8MTL9 139 aa13.99□□□□□ -0.17
CLK3-225ENST00000569063 GCGP01275 180 aa13.99□□□□□ -0.17
CLK3-225ENST00000569063 PFN1P07737 140 aaKnown RBP13.99□□□□□ -0.17
CLK3-225ENST00000569063 FGF8P55075 233 aaPredicted RBP13.99□□□□□ -0.17
CLK3-225ENST00000569063 ZFP69Q49AA0 526 aa13.99□□□□□ -0.17
CLK3-225ENST00000569063 SMUG1Q53HV7 270 aa13.99□□□□□ -0.17
CLK3-225ENST00000569063 ZNF479Q96JC4 524 aa13.99□□□□□ -0.17
CLK3-225ENST00000569063 TRAV4A0A0B4J268 109 aa13.98□□□□□ -0.17
CLK3-225ENST00000569063 FAM74A7A6NL05 159 aa13.98□□□□□ -0.17
CLK3-225ENST00000569063 SFTA3P0C7M3 94 aa13.98□□□□□ -0.17
CLK3-225ENST00000569063 UBE2G2P60604 165 aa13.98□□□□□ -0.17
CLK3-225ENST00000569063 TTC32Q5I0X7 151 aa13.98□□□□□ -0.17
CLK3-225ENST00000569063 OR11H4Q8NGC9 324 aa13.98□□□□□ -0.17
CLK3-225ENST00000569063 LINC00479Q96M42 142 aa13.98□□□□□ -0.17
CLK3-225ENST00000569063 C11orf21Q9P2W6 132 aa13.98□□□□□ -0.17
CLK3-225ENST00000569063 A0A1W2PPQ1 181 aa13.97□□□□□ -0.17
CLK3-225ENST00000569063 MAP1LC3B2A6NCE7 125 aa13.97□□□□□ -0.17
CLK3-225ENST00000569063 IFNA7P01567 189 aa13.97□□□□□ -0.17
CLK3-225ENST00000569063 MRPL23Q16540 153 aaKnown RBP13.97□□□□□ -0.17
CLK3-225ENST00000569063 MAP1LC3BQ9GZQ8 125 aa13.97□□□□□ -0.17
CLK3-225ENST00000569063 A0A0D9SG52 128 aa13.96□□□□□ -0.17
CLK3-225ENST00000569063 PEX7O00628 323 aa13.96□□□□□ -0.17
CLK3-225ENST00000569063 PPT1P50897 306 aa13.96□□□□□ -0.17
CLK3-225ENST00000569063 OR4C5Q8NGB2 326 aa13.96□□□□□ -0.17
CLK3-225ENST00000569063 HIST1H2BAQ96A08 127 aa13.96□□□□□ -0.17
CLK3-225ENST00000569063 KRTAP1-5Q9BYS1 174 aa13.96□□□□□ -0.17
CLK3-225ENST00000569063 ARL2-SNX15V9GYD0 113 aa13.96□□□□□ -0.17
CLK3-225ENST00000569063 TRAV34A0A0B4J273 112 aa13.95□□□□□ -0.18
CLK3-225ENST00000569063 SEC11BP0C7V7 166 aa13.95□□□□□ -0.18
CLK3-225ENST00000569063 PKD1P98161 4303 aa13.94□□□□□ -0.18
CLK3-225ENST00000569063 K7EQD1 137 aa13.94□□□□□ -0.18
CLK3-225ENST00000569063 FHITP49789 147 aa13.94□□□□□ -0.18
CLK3-225ENST00000569063 LYPD5Q6UWN5 251 aa13.94□□□□□ -0.18
CLK3-225ENST00000569063 NEGR1Q7Z3B1 354 aa13.94□□□□□ -0.18
CLK3-225ENST00000569063 STOML3Q8TAV4 291 aa13.94□□□□□ -0.18
CLK3-225ENST00000569063 UMAD1C9J7I0 102 aa13.93□□□□□ -0.18
CLK3-225ENST00000569063 BCL2L11O43521 198 aa13.93□□□□□ -0.18
CLK3-225ENST00000569063 ORM1P02763 201 aa13.93□□□□□ -0.18
CLK3-225ENST00000569063 BTF3P20290 206 aaKnown RBP13.93□□□□□ -0.18
CLK3-225ENST00000569063 TNP2Q05952 138 aa13.93□□□□□ -0.18
CLK3-225ENST00000569063 C9orf85Q96MD7 179 aa13.93□□□□□ -0.18
CLK3-225ENST00000569063 TCEAL7Q9BRU2 100 aa13.93□□□□□ -0.18
CLK3-225ENST00000569063 KANTRA0A1W2PQU2 76 aa13.92□□□□□ -0.18
CLK3-225ENST00000569063 ZNF876PQ49A33 203 aa13.92□□□□□ -0.18
CLK3-225ENST00000569063 Q86TA4 180 aa13.92□□□□□ -0.18
CLK3-225ENST00000569063 PTH2Q96A98 100 aa13.92□□□□□ -0.18
CLK3-225ENST00000569063 FABP5P3A8MUU1 101 aa13.91□□□□□ -0.18
CLK3-225ENST00000569063 C9JCJ5 164 aa13.91□□□□□ -0.18
CLK3-225ENST00000569063 SIVA1O15304 175 aa13.91□□□□□ -0.18
CLK3-225ENST00000569063 NXPH4O95158 308 aa13.91□□□□□ -0.18
CLK3-225ENST00000569063 RNASE3P12724 160 aaKnown RBP13.91□□□□□ -0.18
CLK3-225ENST00000569063 GYPEP15421 78 aa13.91□□□□□ -0.18
CLK3-225ENST00000569063 SRIP30626 198 aa13.91□□□□□ -0.18
CLK3-225ENST00000569063 COX8CQ7Z4L0 72 aa13.91□□□□□ -0.18
CLK3-225ENST00000569063 PCNPQ8WW12 178 aaKnown RBP13.91□□□□□ -0.18
CLK3-225ENST00000569063 MBD3L1Q8WWY6 194 aa13.91□□□□□ -0.18
CLK3-225ENST00000569063 ZNF471Q9BX82 626 aaPredicted RBP13.91□□□□□ -0.18
CLK3-225ENST00000569063 PKHD1P08F94 4074 aa13.91□□□□□ -0.18
CLK3-225ENST00000569063 IGKV3D-20A0A0C4DH25 116 aa13.9□□□□□ -0.18
CLK3-225ENST00000569063 CIDEAO60543 219 aa13.9□□□□□ -0.18
CLK3-225ENST00000569063 FMC1Q96HJ9 113 aa13.9□□□□□ -0.18
CLK3-225ENST00000569063 ZFP30Q9Y2G7 519 aa13.9□□□□□ -0.18
CLK3-225ENST00000569063 RS1O15537 224 aa13.89□□□□□ -0.19
CLK3-225ENST00000569063 GATA1P15976 413 aaPredicted RBP13.89□□□□□ -0.19
CLK3-225ENST00000569063 EIF5AP63241 154 aaKnown RBP13.89□□□□□ -0.19
CLK3-225ENST00000569063 CFAP126Q5VTH2 177 aa13.89□□□□□ -0.19
CLK3-225ENST00000569063 CST9LP1Q5W188 147 aa13.89□□□□□ -0.19
CLK3-225ENST00000569063 DPPA3Q6W0C5 159 aa13.89□□□□□ -0.19
CLK3-225ENST00000569063 SFT2D1Q8WV19 159 aa13.89□□□□□ -0.19
CLK3-225ENST00000569063 TRBV6-1A0A0K0K1D8 114 aa13.88□□□□□ -0.19
CLK3-225ENST00000569063 PGPEP1LA6NFU8 196 aa13.88□□□□□ -0.19
CLK3-225ENST00000569063 TMUB2Q71RG4 321 aa13.88□□□□□ -0.19
CLK3-225ENST00000569063 FAM213BQ8TBF2 198 aa13.88□□□□□ -0.19
CLK3-225ENST00000569063 TXNDC17Q9BRA2 123 aa13.88□□□□□ -0.19
CLK3-225ENST00000569063 PAGE4O60829 102 aa13.87□□□□□ -0.19
CLK3-225ENST00000569063 MED14OSP0DP75 135 aa13.87□□□□□ -0.19
CLK3-225ENST00000569063 CRIP1P50238 77 aa13.87□□□□□ -0.19
CLK3-225ENST00000569063 ZNF506Q5JVG8 444 aa13.87□□□□□ -0.19
CLK3-225ENST00000569063 SH2D6Q7Z4S9 175 aa13.87□□□□□ -0.19
CLK3-225ENST00000569063 ZC2HC1AQ96GY0 325 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 855.9 ms