RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-215	ENST00000566843	IGHV3OR16-8	A0A075B7F1	116 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	TRAV8-2	A0A0B4J237	113 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	SPTA1	P02549	2419 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	PRTN3	P24158	256 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	LY6D	Q14210	128 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	ORMDL2	Q53FV1	153 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	CFAP126	Q5VTH2	177 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	FOXI1	Q12951	378 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	C9orf47	Q6ZRZ4	202 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	MTURN	Q8N3F0	131 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	C1QTNF4	Q9BXJ3	329 aa		12	□□□□□ -0.49
COMMD4-215	ENST00000566843	IGHV7-81	A0A0B4J1V7	117 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	CLPSL1	A2RUU4	121 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	SMCP	P49901	116 aa	Predicted RBP	11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	CRYBA4	P53673	196 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	CKS1B	P61024	79 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	TMEM78	Q5T7P6	136 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	OOSP1	A8MZH6	123 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	APOM	O95445	188 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	ATP5G2	Q06055	141 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	SPANXN1	Q5VSR9	72 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	SCGB3A1	Q96QR1	104 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	CYSLTR1	Q9Y271	337 aa		11.99	□□□□□ -0.49
COMMD4-215	ENST00000566843	TRAV26-1	A0A087WT03	109 aa		11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	IGHV3-35	A0A0C4DH35	117 aa		11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	FAM110D	Q8TAY7	271 aa	Predicted RBP	11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	C20orf78	Q9BR46	151 aa		11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	PGPEP1	Q9NXJ5	209 aa		11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	SMG1	Q96Q15	3661 aa	Known RBP	11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	CENPVL3	A0A0U1RRI6	287 aa		11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	UBE2D1	P51668	147 aa		11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	LCNL1	Q6ZST4	164 aa		11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	DLX4	Q92988	240 aa	Predicted RBP	11.98	□□□□□ -0.49
COMMD4-215	ENST00000566843	KLRB1	Q12918	225 aa		11.97	□□□□□ -0.49
COMMD4-215	ENST00000566843	CDIP1	Q9H305	208 aa		11.97	□□□□□ -0.49
COMMD4-215	ENST00000566843	PKD1L2	Q7Z442	2459 aa		11.96	□□□□□ -0.49
COMMD4-215	ENST00000566843	ITPR1	Q14643	2758 aa		11.96	□□□□□ -0.49
COMMD4-215	ENST00000566843	COX6B1	P14854	86 aa		11.96	□□□□□ -0.49
COMMD4-215	ENST00000566843	SUMO2	P61956	95 aa	Known RBP	11.96	□□□□□ -0.49
COMMD4-215	ENST00000566843	C15orf32	Q32M92	178 aa		11.96	□□□□□ -0.49
COMMD4-215	ENST00000566843	VMO1	Q7Z5L0	202 aa		11.96	□□□□□ -0.49
COMMD4-215	ENST00000566843	BAALC	Q8WXS3	180 aa		11.96	□□□□□ -0.49
COMMD4-215	ENST00000566843	RASL10A	Q92737	203 aa		11.96	□□□□□ -0.49
COMMD4-215	ENST00000566843	PRADC1	Q9BSG0	188 aa		11.96	□□□□□ -0.49
COMMD4-215	ENST00000566843	ACACB	O00763	2458 aa		11.96	□□□□□ -0.5
COMMD4-215	ENST00000566843	RELN	P78509	3460 aa		11.96	□□□□□ -0.5
COMMD4-215	ENST00000566843		H3BVH4	76 aa		11.95	□□□□□ -0.5
COMMD4-215	ENST00000566843	CLEC3B	P05452	202 aa		11.95	□□□□□ -0.5
COMMD4-215	ENST00000566843		Q6ZQT7	251 aa		11.95	□□□□□ -0.5
COMMD4-215	ENST00000566843	C8orf86	Q6ZUL3	223 aa		11.95	□□□□□ -0.5
COMMD4-215	ENST00000566843		Q8N9W7	124 aa		11.95	□□□□□ -0.5
COMMD4-215	ENST00000566843	UBE2D3	P61077	147 aa		11.95	□□□□□ -0.5
COMMD4-215	ENST00000566843	UBE2D2	P62837	147 aa		11.95	□□□□□ -0.5
COMMD4-215	ENST00000566843	MRPL16	Q9NX20	251 aa	Known RBP	11.95	□□□□□ -0.5
COMMD4-215	ENST00000566843		U3KQE9	123 aa		11.95	□□□□□ -0.5
COMMD4-215	ENST00000566843	IGHV3-66	A0A0C4DH42	116 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	LINC01549	A6NIU2	74 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	RNF223	E7ERA6	249 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	MINOS1	Q5TGZ0	78 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	C1orf122	Q6ZSJ8	110 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	SYT8	Q8NBV8	401 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	LENEP	Q9Y5L5	61 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	MINOS1-NBL1	R4GNA1	71 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	PRSS29P	A6NIE9	313 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843		M0R381	172 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	TSPAN13	O95857	204 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	NFE4	Q86UQ8	179 aa		11.94	□□□□□ -0.5
COMMD4-215	ENST00000566843	ZNF815P	A8K554	130 aa		11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	PRR9	Q5T870	116 aa		11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	C2orf66	Q6UXQ4	117 aa		11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	ZNF418	Q8TF45	676 aa	Predicted RBP	11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	PLEKHB2	Q96CS7	222 aa		11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	CCDC140	Q96MF4	163 aa		11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	KLK15	Q9H2R5	256 aa		11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	ARHGAP32	A7KAX9	2087 aa		11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	CD7	P09564	240 aa		11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	DPH3P1	Q9H4G8	78 aa		11.93	□□□□□ -0.5
COMMD4-215	ENST00000566843	PCNX1	Q96RV3	2341 aa		11.92	□□□□□ -0.5
COMMD4-215	ENST00000566843	METTL26	Q96S19	204 aa		11.91	□□□□□ -0.5
COMMD4-215	ENST00000566843	PSMB2	P49721	201 aa		11.91	□□□□□ -0.5
COMMD4-215	ENST00000566843	LYRM7	Q5U5X0	104 aa		11.91	□□□□□ -0.5
COMMD4-215	ENST00000566843	CLEC19A	Q6UXS0	136 aa		11.91	□□□□□ -0.5
COMMD4-215	ENST00000566843	SBSPON	Q8IVN8	264 aa		11.91	□□□□□ -0.5
COMMD4-215	ENST00000566843	ITLN2	Q8WWU7	325 aa	Predicted RBP	11.91	□□□□□ -0.5
COMMD4-215	ENST00000566843	RPL39L	Q96EH5	51 aa	Known RBP	11.91	□□□□□ -0.5
COMMD4-215	ENST00000566843	TIMD4	Q96H15	378 aa		11.91	□□□□□ -0.5
COMMD4-215	ENST00000566843	IGHV3OR16-13	A0A075B7E8	117 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	IGHV3-74	A0A0B4J1X5	117 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	MED14OS	P0DP75	135 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	PPDPFL	Q8WWR9	84 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	CARD19	Q96LW7	228 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	VKORC1	Q9BQB6	163 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	GEMIN7	Q9H840	131 aa	Known RBP	11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	FHL3	Q13643	280 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	ZFP2	Q6ZN57	461 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	LINC01560	Q8TB33	94 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	COL6A6	A6NMZ7	2263 aa		11.9	□□□□□ -0.5
COMMD4-215	ENST00000566843	NBAS	A2RRP1	2371 aa		11.9	□□□□□ -0.51
COMMD4-215	ENST00000566843	POLE	Q07864	2286 aa		11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms